mRNA_M-pyrifera_M_contig84291.19665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84291.19665.1
Unique NamemRNA_M-pyrifera_M_contig84291.19665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A067CX52_SAPPC (Methionyl-tRNA formyltransferase, mitochondrial n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CX52_SAPPC)

HSP 1 Score: 129 bits (323), Expect = 2.650e-32
Identity = 80/206 (38.83%), Postives = 110/206 (53.40%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRGKRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD V++PTL LL+  M    +   LVR ++VICP  R + R  KR   P PV  F+  +++  H IP G++  +DW     ++                   FDVGVVVSFGY +   + +  K G + NMHPSLLP++RG +PI  T+  GD  TGVSV  + PT  D G +L Q  + +    T   L+  LA  GA
Sbjct:   27 LRVLFFGTDNVSLPTLELLHAHMQSTSDAPPLVREIEVICPPDRKMAR--KRTKAPVPVKQFALENNLAVHHIPDGVKSLKDWTMPVTKD-------------------FDVGVVVSFGYFLHPHMLEHVKHGAI-NMHPSLLPKYRGPAPIPRTLWHGDAVTGVSVIEIDPTAFDVGRILDQTTMDVPPASTFHSLSDVLARAGA 210          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A024UHN4_9STRA (Methionyl-tRNA formyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHN4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.480e-31
Identity = 76/207 (36.71%), Postives = 116/207 (56.04%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRGK-RYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD +++ TL+LL+ +M G+ +   L+  +++ICP   P +R GK R   P PV  F+  H++  H IP  ++  +DWD + A  G                 +FD+GVVVSFGY +   +    + G + NMHPSLLP++RG +PI   +L GD +TG+SV  + P   D G +L Q+ + +    T   L+  LA+ GA
Sbjct:   38 LRVLFFGTDNISLATLKLLHANMIGQSKTP-LIEDIEIICP---PDKRMGKARNKAPVPVKQFALEHNLQVHHIPDNVKSLKDWD-MPATNG-----------------SFDIGVVVSFGYFIHPHMLANVRHGAI-NMHPSLLPKYRGPAPIPRALLHGDTKTGISVIEIDPLAFDVGRILLQKELPIPPTSTYLSLSTFLAEEGA 221          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A1W0A686_9STRA (Methionyl-tRNA formyltransferase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A686_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.550e-31
Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRGKRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD V++PTL LL+  M  +     L++ ++VICP  R + R  KR   P PV  F+  + +  H IP G++  +DW+    +                    FD+GVVVSFGY +   + +  K G + NMHPSLLP++RG +PI  T+  GD  TG+SV  + P   D G +L Q  + +    T   L+  LA+ GA
Sbjct:   23 LRVLFFGTDNVSLPTLELLHAHMQPEENATPLIKEIEVICPPDRKMAR--KRTKAPVPVKQFALENDLVVHHIPDGVKSLKDWEMPTTKP-------------------FDIGVVVSFGYFIHPHMLENVKHGAI-NMHPSLLPKYRGPAPIPRTLWNGDQVTGISVIEIDPRAFDVGRILHQTTIPVPPASTFHSLSKFLAERGA 206          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A024UGX2_9STRA (Methionyl-tRNA formyltransferase, mitochondrial n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGX2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.680e-31
Identity = 76/207 (36.71%), Postives = 116/207 (56.04%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRGK-RYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD +++ TL+LL+ +M G+ +   L+  +++ICP   P +R GK R   P PV  F+  H++  H IP  ++  +DWD + A  G                 +FD+GVVVSFGY +   +    + G + NMHPSLLP++RG +PI   +L GD +TG+SV  + P   D G +L Q+ + +    T   L+  LA+ GA
Sbjct:   38 LRVLFFGTDNISLATLKLLHANMIGQSKTP-LIEDIEIICP---PDKRMGKARNKAPVPVKQFALEHNLQVHHIPDNVKSLKDWD-MPATNG-----------------SFDIGVVVSFGYFIHPHMLANVRHGAI-NMHPSLLPKYRGPAPIPRALLHGDTKTGISVIEIDPLAFDVGRILLQKELPIPPTSTYLSLSTFLAEEGA 221          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A6G0W8K3_9STRA (Methionyl-tRNA formyltransferase, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8K3_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.720e-31
Identity = 72/206 (34.95%), Postives = 111/206 (53.88%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRGKRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD +++ TL+ L+ +M+ K     L++ ++++CP  + + R  +R   P PV  F+  H++  H IP  ++  +DW                         +FDVGVVVSFGY +   + +  K G + NMHPSLLP++RG +PI   +  GD +TG+SV  + PT  D G +L Q+ V +    T   L+A LA  GA
Sbjct:   29 LRVLFFGTDNISLATLKRLHANMSSKSSEPPLIKDIEIVCPPDKRMARARQR--APVPVKQFALEHNLTVHHIPDDVKSLKDWPM-------------------PTQASFDVGVVVSFGYFIHPHMLEHVKHGAI-NMHPSLLPKYRGPAPIPRALFNGDTKTGISVIEIDPTAFDVGRILLQKEVPIAQDATYHSLSADLAGRGA 212          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A485LCK9_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCK9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.190e-31
Identity = 77/206 (37.38%), Postives = 114/206 (55.34%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRGKRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD++++ TL+ L+ +M    E   LV+ ++VICP  + I R  K+  TP PV  F+   ++P H IP  ++  +DW                       +  FDVGVVVSFGY +   + +  K+G + NMHPSLLP++RG +PI   +L GD  TG+SV  + PT  D G +L Q+ + +    T   L++ LAD GA
Sbjct:   40 LRVLFFGTDDISLATLKQLHANMTSNEE--PLVKHIEVICPPDKRIGRSRKK--TPVPVKQFALEQNLPVHHIPDNVKSLKDWPM-------------------PTNATFDVGVVVSFGYFIHPHMLQHVKNGAI-NMHPSLLPKYRGPAPIPRALLHGDTTTGISVIEIDPTAFDVGRILLQKPLPIPRDATYLSLSSYLADQGA 221          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: W4GFD1_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFD1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.210e-30
Identity = 76/209 (36.36%), Postives = 112/209 (53.59%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAG--KGEFGGLVRSLDVICPGPRPIRRRGK-RYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD +++ TL+ L+ SM G  K     L++ +++ICP   P +  GK R+  P PV AF+  H++  H IP  ++  +DW    +                     FD+GVVVSFGY +   +    K G + NMHPSLLP++RG +PI   +L GD  TG+SV  + P   D G +L Q+ + +    T   L+A LA+ GA
Sbjct:   38 LRVLFFGTDNISLATLKRLHASMIGQSKATQPPLIQDIEIICP---PDKHMGKARHKAPVPVKAFALEHNLVVHHIPDNVKSLKDWAMPPSAA------------------PFDIGVVVSFGYFIHPHMLANVKHGAI-NMHPSLLPKYRGPAPIPRALLHGDTTTGISVIEIDPLAFDVGRILLQKELPIPPTSTYHSLSAHLAEEGA 224          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: W4GGJ7_9STRA (Methionyl-tRNA formyltransferase, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGJ7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.750e-30
Identity = 76/209 (36.36%), Postives = 112/209 (53.59%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAG--KGEFGGLVRSLDVICPGPRPIRRRGK-RYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            +RVLF GTD +++ TL+ L+ SM G  K     L++ +++ICP   P +  GK R+  P PV AF+  H++  H IP  ++  +DW    +                     FD+GVVVSFGY +   +    K G + NMHPSLLP++RG +PI   +L GD  TG+SV  + P   D G +L Q+ + +    T   L+A LA+ GA
Sbjct:   38 LRVLFFGTDNISLATLKRLHASMIGQSKATQPPLIQDIEIICP---PDKHMGKARHKAPVPVKAFALEHNLVVHHIPDNVKSLKDWAMPPSAA------------------PFDIGVVVSFGYFIHPHMLANVKHGAI-NMHPSLLPKYRGPAPIPRALLHGDTTTGISVIEIDPLAFDVGRILLQKELPIPPTSTYHSLSAHLAEEGA 224          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A1V9ZFU6_9STRA (Methionyl-tRNA formyltransferase, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFU6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.640e-29
Identity = 74/184 (40.22%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    1 MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGG-LVRSLDVICPGPRPIRRRGKRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQ 549
            +RVLF GTD V++PTL+LL+ +M         L+R ++VICP  R + R  KR   P PV  F+  H +P H IP G++  ++W                       D  FDVGVVVSFGY +   +    K G + NMHPSLLP++RG +PI  T+  GD  TGVSV  + P   D G +L Q
Sbjct:   28 LRVLFFGTDNVSLPTLQLLHANMQPTATGAPPLIREIEVICPPDRKMAR--KRTKAPVPVKQFALEHDLPVHHIPDGVKSLKEWPM-------------------PVDKDFDVGVVVSFGYFIHPHMLAHVKHGAI-NMHPSLLPKYRGPAPIPRTLWNGDAITGVSVIEIDPKAFDVGRILDQ 189          
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Match: A0A225W0H4_9STRA (Methionyl-tRNA formyltransferase, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0H4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.730e-29
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 1
Query:    4 RVLFLGTDEVAVPTLRLLY-DSMAGKGEFGGLVRSLDVICPGPRPIRRRGKRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRGLFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGASPIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTASLADIGA 618
            RVLF GTD+V++ TL+LL+ +S A +G+   L+  ++V+CP  RP+   G++   P PV  F+    +     P  L+  + WD                       D FDVGVVVSFGY +   + K    G + NMHPSLLP++RG +PI   +L GD  TGVSV  + P   D G +L QER  +     C +LT  LA  GA
Sbjct:   31 RVLFFGTDDVSLATLKLLHANSHAERGD-DRLIEHIEVVCPSDRPMN--GRKKDEPVPVKKFAQRCGLKVFDTPAHLKSLKTWDF-------------------PVTDNFDVGVVVSFGYFLHPHMLKNLLHGAI-NMHPSLLPKYRGPAPIHHALLNGDSTTGVSVIEIDPKAFDVGRILLQERFDIKPSIQCQELTTELASFGA 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84291.19665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CX52_SAPPC2.650e-3238.83Methionyl-tRNA formyltransferase, mitochondrial n=... [more]
A0A024UHN4_9STRA1.480e-3136.71Methionyl-tRNA formyltransferase n=2 Tax=Aphanomyc... [more]
A0A1W0A686_9STRA5.550e-3136.41Methionyl-tRNA formyltransferase, mitochondrial n=... [more]
A0A024UGX2_9STRA5.680e-3136.71Methionyl-tRNA formyltransferase, mitochondrial n=... [more]
A0A6G0W8K3_9STRA6.720e-3134.95Methionyl-tRNA formyltransferase, mitochondrial n=... [more]
A0A485LCK9_9STRA7.190e-3137.38Methionyl-tRNA formyltransferase n=1 Tax=Aphanomyc... [more]
W4GFD1_9STRA1.210e-3036.36Methionyl-tRNA formyltransferase n=1 Tax=Aphanomyc... [more]
W4GGJ7_9STRA8.750e-3036.36Methionyl-tRNA formyltransferase, mitochondrial n=... [more]
A0A1V9ZFU6_9STRA1.640e-2940.22Methionyl-tRNA formyltransferase, mitochondrial n=... [more]
A0A225W0H4_9STRA1.730e-2937.86Methionyl-tRNA formyltransferase, mitochondrial n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84291contigM-pyrifera_M_contig84291:263..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue3e-28
Seed eggNOG ortholog112098.XP_008615769.1
Preferred nameMTFMT
KEGG rclassRC00026,RC00165
KEGG koko:K00604
KEGG ReactionR03940
KEGG Pathwayko00670,ko00970,map00670,map00970
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0031974,GO:0032543,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070124,GO:0071704,GO:0071951,GO:0090304,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.methionyl-tRNA formyltransferase activity
EggNOG OGsCOG0223@1,KOG3082@2759
EC2.1.2.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size618
Cds size618
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.5958421-CDS-M-pyrifera_M_contig84291:262..8801622816750.5958421-CDS-M-pyrifera_M_contig84291:262..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84291 263..880 +
1692278156.3589363-CDS-M-pyrifera_M_contig84291:262..8801692278156.3589363-CDS-M-pyrifera_M_contig84291:262..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84291 263..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84291.19665.1prot_M-pyrifera_M_contig84291.19665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84291 263..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84291.19665.1

>prot_M-pyrifera_M_contig84291.19665.1 ID=prot_M-pyrifera_M_contig84291.19665.1|Name=mRNA_M-pyrifera_M_contig84291.19665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
MRVLFLGTDEVAVPTLRLLYDSMAGKGEFGGLVRSLDVICPGPRPIRRRG
KRYTTPTPVHAFSHSHSIPTHLIPHGLRRFRDWDGIGAEEGGLEGGGKRG
LFGGEYDDAFDVGVVVSFGYMVGAKVRKLCKDGILLNMHPSLLPRFRGAS
PIISTILEGDHETGVSVQLLHPTVMDGGDVLSQERVRLDGQETCDQLTAS
LADIGA
back to top

mRNA from alignment at M-pyrifera_M_contig84291:263..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84291.19665.1 ID=mRNA_M-pyrifera_M_contig84291.19665.1|Name=mRNA_M-pyrifera_M_contig84291.19665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig84291:263..880+ (Macrocystis pyrifera P11B4 male)
ATGCGTGTGCTTTTCCTTGGAACGGATGAGGTTGCAGTTCCAACGTTGCG CTTGTTGTATGATTCCATGGCTGGAAAAGGGGAGTTTGGAGGGCTTGTTC GTTCTTTGGACGTGATTTGCCCTGGCCCGAGACCCATTCGGCGAAGAGGC AAGCGATACACAACCCCCACTCCAGTGCACGCCTTCTCCCACTCCCACTC CATCCCTACACACCTGATCCCTCACGGGTTGAGGCGATTTCGAGATTGGG ATGGAATTGGAGCTGAGGAGGGTGGATTAGAGGGAGGTGGTAAGAGAGGG TTGTTTGGAGGGGAGTATGATGACGCGTTTGACGTTGGGGTGGTTGTGAG CTTTGGGTATATGGTGGGGGCGAAGGTGAGGAAGTTGTGCAAAGACGGCA TTTTGTTGAACATGCACCCTTCGCTTCTTCCTCGATTTCGAGGAGCCTCA CCCATCATCTCGACGATTCTTGAAGGGGACCACGAGACTGGCGTGAGTGT GCAGCTGCTTCATCCTACAGTGATGGATGGCGGGGACGTATTGTCGCAGG AACGAGTGAGACTCGATGGTCAAGAAACATGCGACCAATTGACTGCCTCC TTGGCTGATATCGGAGCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84291:263..880+

>mRNA_M-pyrifera_M_contig84291.19665.1 ID=mRNA_M-pyrifera_M_contig84291.19665.1|Name=mRNA_M-pyrifera_M_contig84291.19665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig84291:263..880+ (Macrocystis pyrifera P11B4 male)
ATGCGTGTGCTTTTCCTTGGAACGGATGAGGTTGCAGTTCCAACGTTGCG
CTTGTTGTATGATTCCATGGCTGGAAAAGGGGAGTTTGGAGGGCTTGTTC
GTTCTTTGGACGTGATTTGCCCTGGCCCGAGACCCATTCGGCGAAGAGGC
AAGCGATACACAACCCCCACTCCAGTGCACGCCTTCTCCCACTCCCACTC
CATCCCTACACACCTGATCCCTCACGGGTTGAGGCGATTTCGAGATTGGG
ATGGAATTGGAGCTGAGGAGGGTGGATTAGAGGGAGGTGGTAAGAGAGGG
TTGTTTGGAGGGGAGTATGATGACGCGTTTGACGTTGGGGTGGTTGTGAG
CTTTGGGTATATGGTGGGGGCGAAGGTGAGGAAGTTGTGCAAAGACGGCA
TTTTGTTGAACATGCACCCTTCGCTTCTTCCTCGATTTCGAGGAGCCTCA
CCCATCATCTCGACGATTCTTGAAGGGGACCACGAGACTGGCGTGAGTGT
GCAGCTGCTTCATCCTACAGTGATGGATGGCGGGGACGTATTGTCGCAGG
AACGAGTGAGACTCGATGGTCAAGAAACATGCGACCAATTGACTGCCTCC
TTGGCTGATATCGGAGCTATGCGTGTGCTTTTCCTTGGAACGGATGAGGT
TGCAGTTCCAACGTTGCGCTTGTTGTATGATTCCATGGCTGGAAAAGGGG
AGTTTGGAGGGCTTGTTCGTTCTTTGGACGTGATTTGCCCTGGCCCGAGA
CCCATTCGGCGAAGAGGCAAGCGATACACAACCCCCACTCCAGTGCACGC
CTTCTCCCACTCCCACTCCATCCCTACACACCTGATCCCTCACGGGTTGA
GGCGATTTCGAGATTGGGATGGAATTGGAGCTGAGGAGGGTGGATTAGAG
GGAGGTGGTAAGAGAGGGTTGTTTGGAGGGGAGTATGATGACGCGTTTGA
CGTTGGGGTGGTTGTGAGCTTTGGGTATATGGTGGGGGCGAAGGTGAGGA
AGTTGTGCAAAGACGGCATTTTGTTGAACATGCACCCTTCGCTTCTTCCT
CGATTTCGAGGAGCCTCACCCATCATCTCGACGATTCTTGAAGGGGACCA
CGAGACTGGCGTGAGTGTGCAGCTGCTTCATCCTACAGTGATGGATGGCG
GGGACGTATTGTCGCAGGAACGAGTGAGACTCGATGGTCAAGAAACATGC
GACCAATTGACTGCCTCCTTGGCTGATATCGGAGCT
back to top