mRNA_M-pyrifera_M_contig84286.19664.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84286.19664.1
Unique NamemRNA_M-pyrifera_M_contig84286.19664.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: L8GL95_ACACA (Uncharacterized protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GL95_ACACA)

HSP 1 Score: 124 bits (311), Expect = 1.230e-32
Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 1
Query:    1 HPLVERFPEDAHTTEG--ALQYFTARAIQALITGWAWEGAH----FLHTAKGAREGDGEDAVCAVEVHFVHKHHGEYMSLYVLAHARGKGLFPA-IVERVGLPVITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            HPLVERFP DA +TE     +YF  RA+Q L +GW + G +    +        EGD                   Y + Y+ A  R +G+F + I       ++T  DC +  +L K  IPY    +     + EY +VEAFYG+KVTRR+GVHL+NHIDEG++++    ASE + RA+ +HP++QGD
Sbjct:    9 HPLVERFPMDAASTEPHEVERYFQNRAVQLLSSGWKFTGKYERLEWGAITSAVHEGDPSKV---------------YHTAYIYADTRAQGVFTSWIKSHPDHAIVTTPDCGLEAFLTKHSIPYAVARKPQ---FEEYEMVEAFYGNKVTRRSGVHLINHIDEGLYILKRIGASEWAQRAYAIHPILQGD 179          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: A0A119HFF3_9BURK (Uncharacterized protein n=1 Tax=Burkholderia ubonensis TaxID=101571 RepID=A0A119HFF3_9BURK)

HSP 1 Score: 118 bits (295), Expect = 3.250e-29
Identity = 76/180 (42.22%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   10 VERFPEDAHTTEGALQYFTARAIQALITGWAWEGAHFLHTAKGAREGDGEDAVCAVEVHFVHKHHGE-YMSLYVLAHARGKGLFPAIVERVGLPVITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            + R P DA T     QYF  R+ Q L  G+ W G   L  A G      E  V   EV F H+  G  + S + L HARGKG    +V+ +G P++T+ DC I + L   G  Y   G+       EY+L++A Y D   RR+ V LMNHIDEG+ VMA+  AS  +MRAFCLHPL+Q D
Sbjct:    3 IARLPHDASTEMEVRQYFDTRSRQLLHEGYQWNGE--LAWAPGF-----ESEV--YEVEFTHRDTGTAFASYFALPHARGKGHLRKLVD-LGKPIVTLTDCNIEDALRHVGANYVLAGQLTQS--TEYKLIQAQYADGRARRSQVFLMNHIDEGLAVMAAVGASNCAMRAFCLHPLLQND 170          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: UPI00075CB143 (hypothetical protein n=2 Tax=Burkholderia ubonensis TaxID=101571 RepID=UPI00075CB143)

HSP 1 Score: 112 bits (280), Expect = 5.220e-27
Identity = 72/179 (40.22%), Postives = 98/179 (54.75%), Query Frame = 1
Query:   10 VERFPEDAHTTEGALQYFTARAIQALITGWAWEGAHFLHTAKGAREGDGEDAVCAVEVHFVHKHHGEYMSLYVLAHARGKGLFPAIVERVGLPVITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            + R P DA +     QY+  R  Q L  G+ W+GA  L  A G  EGD        E  F  +H   + S + L HARGKG    +V  +G  ++T+ DC I + L   G  Y+  G+       EY+L++A Y D+  +R+ V LMNHIDEG+ VMA+  AS  +MRAFCLHPL+Q D
Sbjct:    4 IARLPHDAASEAEVRQYYDTRGRQLLHEGYWWDGA--LAWAPGF-EGD------VYETAFT-QHGKTFASYFALPHARGKGHLRKLVA-LGKAIVTLPDCNIEDALRHVGADYRLAGQLTDSA--EYKLIQAEYADQRAKRSRVFLMNHIDEGLAVMAAVGASTLAMRAFCLHPLLQSD 169          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: A0A104Z648_9BURK (Uncharacterized protein n=3 Tax=Burkholderia ubonensis TaxID=101571 RepID=A0A104Z648_9BURK)

HSP 1 Score: 97.4 bits (241), Expect = 2.000e-21
Identity = 64/166 (38.55%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   52 LQYFTARAIQALITGWAWEGAHFLHTAKGAREGDGEDAVCAVEVHFVHKHHGE-YMSLYVLAHARGKGLFPAIVERVGLPVITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            +QY+  R  Q L   + W GA  +    G    +GE      E  F  +  G+ + S + L HARGKG    +V  +G  ++T+ DC I + L      Y+  G+       EY+L++A YGD+  +R+ V LMNHIDEG+ VMA+  AS  +MRAFCLHPL+Q D
Sbjct:    1 MQYYDTRGRQLLHEAFVWSGA--IAWVPGF---EGE----VYETEFTQR--GKTFASYFALPHARGKGHLRKLVG-LGKTIVTLPDCHIEDALRHVSADYRLAGQLTET--VEYKLIQAEYGDQRAKRSRVFLMNHIDEGLAVMAAVEASSLAMRAFCLHPLLQND 152          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: A0A5C7JNY5_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A5C7JNY5_9SPIR)

HSP 1 Score: 90.9 bits (224), Expect = 8.380e-19
Identity = 61/184 (33.15%), Postives = 93/184 (50.54%), Query Frame = 1
Query:   16 RFPEDAHTTEGALQYFTARAIQALITGWAWEGAHFLHTAKGAREGDGEDAVCAVEVH-FVHKHHGEYMSLYVLAHARGKGLFPAIV----ERVG--LPVITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            RF ++  T E  L+Y+T R++Q          AH      G + G+       V V   V     ++ SLYV    RG G++  +     E++G  + +IT  +C + +YL  K IP+      G    PEY+L+E  YGD    R+GV+LMNHIDEG++++    A   +  A+ LHP+ QGD
Sbjct:    2 RFNKNGRTFEEVLEYYTNRSVQL---------AH-----AGVKMGNNTQLTEGVWVEQTVDWSDEKFYSLYVYEQFRGNGIYHKLYLDKCEQLGYRINIITSTNCGLVDYLAHKNIPHLVV--DGLTQTPEYKLIETIYGDNKAERSGVYLMNHIDEGLYILYKINARTKAKLAYILHPVFQGD 169          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: UPI001683AD3A (hypothetical protein n=1 Tax=Spirosoma profusum TaxID=2771354 RepID=UPI001683AD3A)

HSP 1 Score: 85.9 bits (211), Expect = 5.000e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  289 VITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            V+  DDCR+ +YL K  I Y     S    + EY L+ AFYG +  +R+GV+LMNHIDEG+F++    AS+ + +A+CLHP++Q D
Sbjct:   80 VLITDDCRLDDYLAKNNINYVAVTLSL---FREYELISAFYGAQKAQRSGVYLMNHIDEGLFILEKIQASDVAKKAYCLHPIIQSD 162          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: A0A7V9LA38_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9LA38_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 2.740e-12
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:  385 EYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            EYR + A+YG++  RR+GV L+ HIDEG+ ++    AS  +MRAFCLHPLVQGD
Sbjct:   10 EYRAIAAWYGERTARRSGVRLIAHIDEGLAILERLGASSLAMRAFCLHPLVQGD 63          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: D2W122_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W122_NAEGR)

HSP 1 Score: 72.0 bits (175), Expect = 4.860e-12
Identity = 57/183 (31.15%), Postives = 84/183 (45.90%), Query Frame = 1
Query:    4 PLVERFPEDAHTTEGALQYFTARAIQALITGWAWEGAHFLHTAKGAREGDGEDAVCAVEV-HFVHKHHGE-YMSLYVLAHARGKGLFPAIVERVGLPVITVDDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            P   RF   A      LQY   R  Q+L    + +G H+     G  E   EDA   V +  F+ K+  E ++  YV    R        +      +I   D  + + L  + + Y          + EY+ VE  YGD    R+GVHL+NHIDEG++++    ASE + +A+ LHPL+QGD
Sbjct:    8 PHSPRFNSQAVELNEILQYIQNRCTQSL----SCDGYHYGWN--GQYECVLEDAAIKVNITKFIEKNREEQFVYYYVRPDYRKDDKVIDYIVNESSELIVEKDSFLLDRLNGRKVVYWE-----KCNFVEYQAVEKAYGDHHAERSGVHLINHIDEGMYILKKVGASELAQKAYILHPLIQGD 179          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: R4VVN2_9CAUD (Uncharacterized protein n=2 Tax=unclassified Schitoviridae TaxID=2853013 RepID=R4VVN2_9CAUD)

HSP 1 Score: 69.3 bits (168), Expect = 6.720e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  385 EYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQ 540
            EY  ++ FYGDK  +R+GV LMNHIDEG+ ++ S  AS+  + AFCLHP+VQ
Sbjct:    4 EYNTIKKFYGDKTAKRSGVPLMNHIDEGLEILKSLNASQTELAAFCLHPIVQ 55          
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Match: A0A7Y6XFJ6_9DELT (Uncharacterized protein n=1 Tax=Myxococcus sp. AM011 TaxID=2745200 RepID=A0A7Y6XFJ6_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 3.110e-11
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  385 EYRLVEAFYGDKVTRRTGVHLMNHIDEGVFVMASRYASEASMRAFCLHPLVQGD 546
            EYR ++AFYG +  RR+GV  ++HIDEG++V+ +  ASE + RA+CLHPLVQ D
Sbjct:    7 EYRAIQAFYGQRRARRSGVPYLHHIDEGLWVLRALGASEHAQRAYCLHPLVQED 60          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84286.19664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
L8GL95_ACACA1.230e-3238.10Uncharacterized protein (Fragment) n=1 Tax=Acantha... [more]
A0A119HFF3_9BURK3.250e-2942.22Uncharacterized protein n=1 Tax=Burkholderia ubone... [more]
UPI00075CB1435.220e-2740.22hypothetical protein n=2 Tax=Burkholderia ubonensi... [more]
A0A104Z648_9BURK2.000e-2138.55Uncharacterized protein n=3 Tax=Burkholderia ubone... [more]
A0A5C7JNY5_9SPIR8.380e-1933.15Uncharacterized protein n=1 Tax=Spirochaetes bacte... [more]
UPI001683AD3A5.000e-1745.35hypothetical protein n=1 Tax=Spirosoma profusum Ta... [more]
A0A7V9LA38_9DELT2.740e-1257.41Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
D2W122_NAEGR4.860e-1231.15Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
R4VVN2_9CAUD6.720e-1255.77Uncharacterized protein n=2 Tax=unclassified Schit... [more]
A0A7Y6XFJ6_9DELT3.110e-1155.56Uncharacterized protein n=1 Tax=Myxococcus sp. AM0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84286contigM-pyrifera_M_contig84286:6..722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue3e-08
Seed eggNOG ortholog1443665.JACA01000064_gene4790
Hectar predicted targeting categoryother localisation
EggNOG OGs2DYRW@1,34AUU@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.545669-CDS-M-pyrifera_M_contig84286:5..4071622816750.545669-CDS-M-pyrifera_M_contig84286:5..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84286 6..407 -
1692278156.3108053-CDS-M-pyrifera_M_contig84286:5..4071692278156.3108053-CDS-M-pyrifera_M_contig84286:5..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84286 6..407 -
1622816750.5656152-CDS-M-pyrifera_M_contig84286:578..7221622816750.5656152-CDS-M-pyrifera_M_contig84286:578..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84286 579..722 -
1692278156.3337233-CDS-M-pyrifera_M_contig84286:578..7221692278156.3337233-CDS-M-pyrifera_M_contig84286:578..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84286 579..722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84286.19664.1prot_M-pyrifera_M_contig84286.19664.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84286 6..722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84286.19664.1

>prot_M-pyrifera_M_contig84286.19664.1 ID=prot_M-pyrifera_M_contig84286.19664.1|Name=mRNA_M-pyrifera_M_contig84286.19664.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
HPLVERFPEDAHTTEGALQYFTARAIQALITGWAWEGAHFLHTAKGAREG
DGEDAVCAVEVHFVHKHHGEYMSLYVLAHARGKGLFPAIVERVGLPVITV
DDCRITEYLEKKGIPYKTFGRSGSHGWPEYRLVEAFYGDKVTRRTGVHLM
NHIDEGVFVMASRYASEASMRAFCLHPLVQGD
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mRNA from alignment at M-pyrifera_M_contig84286:6..722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84286.19664.1 ID=mRNA_M-pyrifera_M_contig84286.19664.1|Name=mRNA_M-pyrifera_M_contig84286.19664.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig84286:6..722- (Macrocystis pyrifera P11B4 male)
CATCCGCTGGTCGAGCGTTTCCCAGAAGACGCCCACACGACCGAGGGAGC ACTGCAATACTTCACTGCACGTGCGATCCAAGCGTTGATCACAGGCTGGG CCTGGGAAGGTGCCCACTTCCTCCATACTGCGAAGGGGGCGAGGGTAGAG CGGCACACGACCCCTCCCACCCTCCAGGGCTTCCCTGGGATACTCTGGCA AAGCCAAGACGGCCAGGCAGACGTCATTTGTGATGAAGAAAGGGAGCGTG AAGCCGAGTCTGAAGTCAGTGGTGGGAGTGAGACCGAGGATGTAACGGAT ATCGACGGACAGAAGGAGGGAGATGGAGAGGATGCCGTTTGTGCCGTAGA AGTACATTTTGTTCACAAGCATCACGGTGAGTATATGTCTCTTTATGTGC TAGCTCATGCACGCGGGAAGGGGCTCTTCCCTGCTATTGTGGAGAGAGTA GGCCTCCCGGTGATTACGGTGGACGACTGCCGCATCACAGAGTATTTGGA GAAGAAAGGGATTCCGTACAAGACCTTTGGAAGGAGCGGGAGCCATGGAT GGCCAGAGTATCGGCTTGTGGAGGCATTCTACGGTGACAAAGTTACGCGA AGGACGGGCGTCCACCTCATGAACCATATTGACGAGGGCGTCTTCGTCAT GGCCTCACGCTACGCCTCAGAAGCGAGTATGAGGGCATTTTGCCTGCATC CTCTCGTCCAGGGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84286:6..722-

>mRNA_M-pyrifera_M_contig84286.19664.1 ID=mRNA_M-pyrifera_M_contig84286.19664.1|Name=mRNA_M-pyrifera_M_contig84286.19664.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig84286:6..722- (Macrocystis pyrifera P11B4 male)
CATCCGCTGGTCGAGCGTTTCCCAGAAGACGCCCACACGACCGAGGGAGC
ACTGCAATACTTCACTGCACGTGCGATCCAAGCGTTGATCACAGGCTGGG
CCTGGGAAGGTGCCCACTTCCTCCATACTGCGAAGGGGGCGAGGCATCCG
CTGGTCGAGCGTTTCCCAGAAGACGCCCACACGACCGAGGGAGCACTGCA
ATACTTCACTGCACGTGCGATCCAAGCGTTGATCACAGGCTGGGCCTGGG
AAGGTGCCCACTTCCTCCATACTGCGAAGGGGGCGAGGGAGGGAGATGGA
GAGGATGCCGTTTGTGCCGTAGAAGTACATTTTGTTCACAAGCATCACGG
TGAGTATATGTCTCTTTATGTGCTAGCTCATGCACGCGGGAAGGGGCTCT
TCCCTGCTATTGTGGAGAGAGTAGGCCTCCCGGTGATTACGGTGGACGAC
TGCCGCATCACAGAGTATTTGGAGAAGAAAGGGATTCCGTACAAGACCTT
TGGAAGGAGCGGGAGCCATGGATGGCCAGAGTATCGGCTTGTGGAGGCAT
TCTACGGTGACAAAGTTACGCGAAGGACGGGCGTCCACCTCATGAACCAT
ATTGACGAGGGCGTCTTCGTCATGGCCTCACGCTACGCCTCAGAAGCGAG
TATGAGGGCATTTTGCCTGCATCCTCTCGTCCAGGGCGACGAGGGAGATG
GAGAGGATGCCGTTTGTGCCGTAGAAGTACATTTTGTTCACAAGCATCAC
GGTGAGTATATGTCTCTTTATGTGCTAGCTCATGCACGCGGGAAGGGGCT
CTTCCCTGCTATTGTGGAGAGAGTAGGCCTCCCGGTGATTACGGTGGACG
ACTGCCGCATCACAGAGTATTTGGAGAAGAAAGGGATTCCGTACAAGACC
TTTGGAAGGAGCGGGAGCCATGGATGGCCAGAGTATCGGCTTGTGGAGGC
ATTCTACGGTGACAAAGTTACGCGAAGGACGGGCGTCCACCTCATGAACC
ATATTGACGAGGGCGTCTTCGTCATGGCCTCACGCTACGCCTCAGAAGCG
AGTATGAGGGCATTTTGCCTGCATCCTCTCGTCCAGGGCGAC
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