mRNA_M-pyrifera_M_contig84282.19662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84282.19662.1
Unique NamemRNA_M-pyrifera_M_contig84282.19662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A4Z2BN37_9TELE (tRNA methyltransferase 10 homolog A n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BN37_9TELE)

HSP 1 Score: 112 bits (280), Expect = 7.880e-29
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAA 303
            ELVYLT D+   L+EL   ++Y+IGGL+DHN  K  S  RAKE+ I  A+LP+ +F++M SR VLA+NHVFEI+L YLE G  WE+AF +++P+RK A
Sbjct:   70 ELVYLTSDSPNVLEELDLKKVYVIGGLVDHNHHKGISFERAKERGIDHAQLPLNSFVKMNSRKVLAVNHVFEIILVYLEKGS-WEEAFFTILPQRKGA 166
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A0S7HQZ1_9TELE (tRNA methyltransferase 10 homolog A (Fragment) n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7HQZ1_9TELE)

HSP 1 Score: 110 bits (274), Expect = 8.810e-29
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAA 303
            ELVYLT D+   ++EL + + Y+IGGL+DHN  K  S  RAKE  I  A+LP+ +F++M SR VLA+NHVFEI+LAYLE G  W++AF +V+P+RK A
Sbjct:   30 ELVYLTSDSPNVVEELDQKKAYVIGGLVDHNHHKGISYERAKELGISHAQLPLSSFVKMNSRKVLAVNHVFEIILAYLEKGS-WQEAFFTVLPQRKGA 126
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A4W4GAR5_ELEEL (tRNA methyltransferase 10 homolog A n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GAR5_ELEEL)

HSP 1 Score: 115 bits (287), Expect = 9.080e-29
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAA 303
            +LVYLT D+   LQEL + + Y+IGGL+DHN  K  SL RAKE  I  A+LP+G+F++M SR VLA+NHVFEI+LAYLE   DW++AF +V+P+RK A
Sbjct:  168 DLVYLTSDSPNVLQELDETKAYVIGGLVDHNHHKGISLERAKELGIAHAQLPLGSFVKMNSRKVLAVNHVFEILLAYLEKH-DWQEAFFTVLPQRKGA 264
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: UPI0019AECC81 (RNA (guanine-9-)-methyltransferase domain-containing protein 2 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019AECC81)

HSP 1 Score: 115 bits (287), Expect = 9.410e-29
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAA 303
            +LVYLT D+   LQEL + + Y+IGGL+DHN  K  S  RA E  I  A+LP+G+F++M SR VLA+NHVFEIMLAYLE G DW++AF +V+P+RK A
Sbjct:  168 DLVYLTSDSPNILQELDEAKAYVIGGLVDHNHHKGISFKRANELGIAHAQLPLGSFVKMNSRKVLAVNHVFEIMLAYLEKG-DWQEAFFTVLPQRKGA 264
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: C1BIQ2_OSMMO (tRNA methyltransferase 10 homolog A n=2 Tax=Osmeridae TaxID=8012 RepID=C1BIQ2_OSMMO)

HSP 1 Score: 114 bits (286), Expect = 1.020e-28
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:    1 PEPELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAA---KKKGQAEED 330
            P  ELVYLT D+   L EL  ++ Y+IGGL+DHN  K  S  RAKE  I+ A+LP+ +F++M SR VLA+NHVFEI+LAY+E G DW++AF +V+P+RK A    + GQA ED
Sbjct:  164 PREELVYLTSDSPNVLTELDDNKAYVIGGLVDHNHHKGISFERAKELGIQHAQLPLESFVKMNSRKVLAVNHVFEIILAYMEMG-DWQEAFFTVLPQRKGAVPVDQNGQAVED 275
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: UPI001C4B56FD (tRNA methyltransferase 10 homolog A n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4B56FD)

HSP 1 Score: 114 bits (286), Expect = 1.020e-28
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAAK 306
            +LVYLT D+ + L EL + + Y+IGGL+DHN  K  +  RA+E+ IR A+LP+G F++M SR VLA+NHVFEI+LAYLE   DWE+AF +V+P+RK AK
Sbjct:  187 DLVYLTSDSPDVLNELDESKAYVIGGLVDHNHHKGITYKRAQEQGIRHAQLPLGIFVKMNSRKVLAVNHVFEIILAYLEKR-DWEEAFFTVLPQRKGAK 284
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A6J2VZP9_CHACN (tRNA methyltransferase 10 homolog A n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VZP9_CHACN)

HSP 1 Score: 115 bits (287), Expect = 1.180e-28
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAAKKKGQ 318
            ELVYLT D+   LQEL + + Y+IGGL+DHN  K  S  RAKE  I  A+LP+G+F++M SR VLA+NHVFEI+LAYLE   DW++AF +V+P+RK A   GQ
Sbjct:  174 ELVYLTSDSPNVLQELDEAKAYVIGGLVDHNHHKGISFERAKELGIAHAQLPLGSFVKMNSRKVLAVNHVFEIILAYLEKR-DWQEAFFTVLPQRKGATPVGQ 275
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A2D0REU1_ICTPU (tRNA methyltransferase 10 homolog A n=3 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0REU1_ICTPU)

HSP 1 Score: 114 bits (286), Expect = 1.190e-28
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAAKKKGQ 318
            +LVYLT D+   LQEL + + Y+IGGL+DHN  K  S  RAKE  I  A+LP+G+F++M SR VLA+NHVFEIMLAYLE   DW++AF +V+P+RK A   GQ
Sbjct:  168 DLVYLTSDSPNILQELDEAKAYVIGGLVDHNHHKGISFKRAKELGIAHAQLPLGSFVKMNSRKVLAVNHVFEIMLAYLEKR-DWQEAFFTVLPQRKGAVPVGQ 269
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BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A8D2KYW5_VARKO (tRNA methyltransferase 10 homolog A n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2KYW5_VARKO)

HSP 1 Score: 114 bits (284), Expect = 1.800e-28
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAAK 306
            +LVYLT D+ E L EL + + YIIGGL+DHN  K  +  RA+E+ I  A+LP+G F++M SR VLA+NHVFEI+LAYLE   DWE+AF +V+P+RK AK
Sbjct:  187 DLVYLTSDSPEVLNELDESKAYIIGGLVDHNHHKGITYQRAQEQGISHAQLPLGIFVKMNSRKVLAVNHVFEIILAYLEKK-DWEEAFFTVLPQRKGAK 284
[Close]
BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Match: A0A7K9ELC7_BARMA (tRNA methyltransferase 10 homolog A (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7K9ELC7_BARMA)

HSP 1 Score: 110 bits (276), Expect = 2.200e-28
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:   10 ELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIRTARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKAAKKKGQA 321
            +LVYLT D+ + L EL + + Y+IGGL+DHN  K  +  RA E+ I  A+LP+G+F++M SR VLA+NHVFEI+LAYLE   DW++AF SV+P+RK A   G+A
Sbjct:   71 DLVYLTSDSPDVLHELDEKKAYVIGGLVDHNHHKGITYKRAVEQGISHAQLPLGSFVKMNSRKVLAVNHVFEIILAYLEKR-DWKEAFFSVLPQRKGAVPLGEA 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84282.19662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Z2BN37_9TELE7.880e-2955.10tRNA methyltransferase 10 homolog A n=1 Tax=Takifu... [more]
A0A0S7HQZ1_9TELE8.810e-2955.10tRNA methyltransferase 10 homolog A (Fragment) n=2... [more]
A0A4W4GAR5_ELEEL9.080e-2958.16tRNA methyltransferase 10 homolog A n=2 Tax=Electr... [more]
UPI0019AECC819.410e-2958.16RNA (guanine-9-)-methyltransferase domain-containi... [more]
C1BIQ2_OSMMO1.020e-2853.98tRNA methyltransferase 10 homolog A n=2 Tax=Osmeri... [more]
UPI001C4B56FD1.020e-2856.57tRNA methyltransferase 10 homolog A n=1 Tax=Scelop... [more]
A0A6J2VZP9_CHACN1.180e-2857.28tRNA methyltransferase 10 homolog A n=1 Tax=Chanos... [more]
A0A2D0REU1_ICTPU1.190e-2857.28tRNA methyltransferase 10 homolog A n=3 Tax=Siluro... [more]
A0A8D2KYW5_VARKO1.800e-2857.58tRNA methyltransferase 10 homolog A n=1 Tax=Varanu... [more]
A0A7K9ELC7_BARMA2.200e-2853.85tRNA methyltransferase 10 homolog A (Fragment) n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84282contigM-pyrifera_M_contig84282:108..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score114.0
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog7994.ENSAMXP00000011752
Preferred nameTRMT10A
KEGG koko:K15445
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0010960,GO:0015629,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048878,GO:0050801,GO:0055065,GO:0055080,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072507,GO:0090304,GO:0097159,GO:0098771,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.tRNA methyltransferase 10 homolog
EggNOG OGs38KBM@33154,3BFJZ@33208,3CY40@33213,480JV@7711,48YJH@7742,4A0MH@7898,KOG2967@1,KOG2967@2759
EC2.1.1.221
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.4693642-CDS-M-pyrifera_M_contig84282:107..4401622816750.4693642-CDS-M-pyrifera_M_contig84282:107..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84282 108..440 -
1692278156.2689338-CDS-M-pyrifera_M_contig84282:107..4401692278156.2689338-CDS-M-pyrifera_M_contig84282:107..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84282 108..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84282.19662.1prot_M-pyrifera_M_contig84282.19662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84282 108..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84282.19662.1

>prot_M-pyrifera_M_contig84282.19662.1 ID=prot_M-pyrifera_M_contig84282.19662.1|Name=mRNA_M-pyrifera_M_contig84282.19662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
PEPELVYLTGDAREELQELSKDEIYIIGGLLDHNSLKFASLNRAKEKNIR
TARLPIGAFIEMESRHVLAINHVFEIMLAYLENGGDWEQAFLSVMPKRKA
AKKKGQAEEDE
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mRNA from alignment at M-pyrifera_M_contig84282:108..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84282.19662.1 ID=mRNA_M-pyrifera_M_contig84282.19662.1|Name=mRNA_M-pyrifera_M_contig84282.19662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig84282:108..440- (Macrocystis pyrifera P11B4 male)
CCCGAGCCGGAGCTGGTCTACCTCACTGGCGACGCGCGCGAGGAGCTGCA
GGAGCTGTCGAAGGACGAAATTTACATCATTGGTGGCCTGCTCGACCACA
ACAGCCTCAAGTTCGCCAGCCTCAACCGTGCGAAGGAGAAGAACATCCGC
ACGGCGCGCCTGCCCATCGGCGCATTCATCGAAATGGAGTCGCGCCACGT
GCTGGCCATCAACCACGTGTTCGAGATCATGCTGGCCTACTTGGAGAACG
GCGGCGACTGGGAGCAGGCCTTCCTCTCGGTGATGCCCAAGCGCAAAGCC
GCCAAGAAGAAGGGCCAGGCCGAGGAGGACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84282:108..440-

>mRNA_M-pyrifera_M_contig84282.19662.1 ID=mRNA_M-pyrifera_M_contig84282.19662.1|Name=mRNA_M-pyrifera_M_contig84282.19662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig84282:108..440- (Macrocystis pyrifera P11B4 male)
CCCGAGCCGGAGCTGGTCTACCTCACTGGCGACGCGCGCGAGGAGCTGCA
GGAGCTGTCGAAGGACGAAATTTACATCATTGGTGGCCTGCTCGACCACA
ACAGCCTCAAGTTCGCCAGCCTCAACCGTGCGAAGGAGAAGAACATCCGC
ACGGCGCGCCTGCCCATCGGCGCATTCATCGAAATGGAGTCGCGCCACGT
GCTGGCCATCAACCACGTGTTCGAGATCATGCTGGCCTACTTGGAGAACG
GCGGCGACTGGGAGCAGGCCTTCCTCTCGGTGATGCCCAAGCGCAAAGCC
GCCAAGAAGAAGGGCCAGGCCGAGGAGGACGAGCCCGAGCCGGAGCTGGT
CTACCTCACTGGCGACGCGCGCGAGGAGCTGCAGGAGCTGTCGAAGGACG
AAATTTACATCATTGGTGGCCTGCTCGACCACAACAGCCTCAAGTTCGCC
AGCCTCAACCGTGCGAAGGAGAAGAACATCCGCACGGCGCGCCTGCCCAT
CGGCGCATTCATCGAAATGGAGTCGCGCCACGTGCTGGCCATCAACCACG
TGTTCGAGATCATGCTGGCCTACTTGGAGAACGGCGGCGACTGGGAGCAG
GCCTTCCTCTCGGTGATGCCCAAGCGCAAAGCCGCCAAGAAGAAGGGCCA
GGCCGAGGAGGACGAG
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