mRNA_M-pyrifera_M_contig84281.19661.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84281.19661.1
Unique NamemRNA_M-pyrifera_M_contig84281.19661.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A356X8I9_9BACT (Peptidase M48 (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A356X8I9_9BACT)

HSP 1 Score: 117 bits (292), Expect = 6.240e-32
Identity = 58/88 (65.91%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNIY +II+  IA+DFILD+TSN LN+ SLSK+LPEEF  VYDE TY++SQEYTK +TKFGF+TG FDL ++L FWF+GG N LD+ +
Sbjct:    1 MNIYAVIILATIAIDFILDITSNSLNLRSLSKELPEEFEGVYDEDTYSRSQEYTKIRTKFGFLTGGFDLAVVLGFWFLGGFNWLDEIV 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A2D8CJ58_9BACT (Peptidase M48 n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CJ58_9BACT)

HSP 1 Score: 122 bits (305), Expect = 3.470e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNIY III+  IA+DFILD+TSN LN+ SLSKKLPEEF  VYDE TYAKSQEYTK +TKFGF+TG FDL L+L FWF GG N LD+ +
Sbjct:    1 MNIYAIIILVTIAIDFILDITSNYLNLKSLSKKLPEEFEGVYDEDTYAKSQEYTKVRTKFGFLTGGFDLALVLGFWFSGGFNWLDEIV 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A1B6Y999_9BACT (Peptidase M48 n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y999_9BACT)

HSP 1 Score: 121 bits (303), Expect = 6.690e-31
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNIY III+  IAVDF+LDL SN LN+ SLSK+LP+EF  VYDE+TYAKSQEYTKT+T+FGFITG FDLV+LL FWF GG N LD+ +
Sbjct:    1 MNIYAIIILATIAVDFVLDLISNYLNLKSLSKELPDEFEGVYDEETYAKSQEYTKTQTRFGFITGGFDLVVLLGFWFSGGFNWLDEIV 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A521BKI4_9BACT (STE24 endopeptidase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521BKI4_9BACT)

HSP 1 Score: 121 bits (303), Expect = 6.690e-31
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNIY III+  IA+DFILD+TSN LN+ SLSK+LP+EF +VYDE TYAKSQEYTK +TKFGFITG F+L+L+L FWF GG N LDQ +
Sbjct:    1 MNIYAIIILATIAIDFILDITSNYLNLKSLSKELPQEFKDVYDEDTYAKSQEYTKVRTKFGFITGGFNLLLVLGFWFSGGFNWLDQIV 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: UPI000378CA03 (M48 family metallopeptidase n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI000378CA03)

HSP 1 Score: 120 bits (302), Expect = 9.730e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQ 258
            MNIY +II+ AIAVDF LDL SN LN+ SLSK LP+EF  VYDE+TYAKSQEYTK  T+FGFITG+FDL +LL FWF GG NVLDQ
Sbjct:    1 MNIYAVIILLAIAVDFFLDLISNFLNLKSLSKTLPDEFDGVYDEETYAKSQEYTKVNTRFGFITGAFDLAILLGFWFSGGFNVLDQ 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: UPI000CD9D3A7 (M48 family metallopeptidase n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD9D3A7)

HSP 1 Score: 117 bits (294), Expect = 1.360e-29
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNIY III+  IA+DFILDL SN LN+ SLSK+LP+EF  VYDE TYAKSQEYTK +T+FGFITG FDL L+L FWF GG N LDQ +
Sbjct:    1 MNIYAIIILATIALDFILDLVSNYLNLRSLSKELPDEFEGVYDEDTYAKSQEYTKVRTRFGFITGGFDLALVLGFWFSGGFNWLDQIV 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: UPI001ED9E8AF (M48 family metallopeptidase n=1 Tax=Rhodohalobacter sp. WB101 TaxID=2911366 RepID=UPI001ED9E8AF)

HSP 1 Score: 116 bits (291), Expect = 3.700e-29
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQ 258
            MNI+ +II+ AI VDF+L++ SN LN+ +LSK+LP+EF  VYDE+TYAKSQEYT+ +TKFGFITG+FDL+LLL FWF GG N LDQ
Sbjct:    1 MNIFTVIILAAILVDFVLEIVSNRLNLKALSKELPDEFDGVYDEETYAKSQEYTRVQTKFGFITGTFDLILLLVFWFAGGFNWLDQ 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A2D9FVC2_9BACT (Peptidase M48 n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FVC2_9BACT)

HSP 1 Score: 115 bits (289), Expect = 7.210e-29
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNIY +II+  IA+DFILD+TSN LN+ SLSK+LPEEF  VYDE TY++SQEYTK +TKFGF+TG FDL ++L FWF GG N LD+ +
Sbjct:    1 MNIYAVIILATIAIDFILDITSNYLNLRSLSKELPEEFEGVYDEDTYSRSQEYTKIRTKFGFLTGGFDLAVVLGFWFSGGFNWLDEIV 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A651GLW1_9BACT (M48 family peptidase (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A651GLW1_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.600e-28
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQ 258
            MNI+ III++AI +DF L + SN LN+ +LSK+LPEEF  VYDE+TYAKSQEYT+  TKFGFITG+FDL+LLL FWF GG N LDQ
Sbjct:    1 MNIFTIIILSAIIIDFTLGIISNRLNLKALSKELPEEFEGVYDEETYAKSQEYTRVNTKFGFITGTFDLLLLLVFWFAGGFNWLDQ 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Match: A0A6A8Q1I9_9BACT (M48 family metallopeptidase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q1I9_9BACT)

HSP 1 Score: 113 bits (282), Expect = 7.460e-28
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKSQEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI 264
            MNI+ +II+  I V+FILDL SN LN+ SL K+LP EF EVYDE+TYAKSQEYTK +TKFGFITG FDL +L+ FWF GG N LDQ +
Sbjct:    1 MNIFAVIILATILVEFILDLVSNYLNLKSLKKELPGEFEEVYDEETYAKSQEYTKVQTKFGFITGIFDLGVLMVFWFSGGFNWLDQIV 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84281.19661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356X8I9_9BACT6.240e-3265.91Peptidase M48 (Fragment) n=1 Tax=Balneolaceae bact... [more]
A0A2D8CJ58_9BACT3.470e-3171.59Peptidase M48 n=1 Tax=Balneola sp. TaxID=2024824 R... [more]
A0A1B6Y999_9BACT6.690e-3171.59Peptidase M48 n=7 Tax=Bacteroidetes/Chlorobi group... [more]
A0A521BKI4_9BACT6.690e-3170.45STE24 endopeptidase n=1 Tax=Gracilimonas mengyeens... [more]
UPI000378CA039.730e-3173.26M48 family metallopeptidase n=1 Tax=Balneola vulga... [more]
UPI000CD9D3A71.360e-2970.45M48 family metallopeptidase n=1 Tax=Gracilimonas a... [more]
UPI001ED9E8AF3.700e-2967.44M48 family metallopeptidase n=1 Tax=Rhodohalobacte... [more]
A0A2D9FVC2_9BACT7.210e-2965.91Peptidase M48 n=2 Tax=Balneolaceae TaxID=1813606 R... [more]
A0A651GLW1_9BACT2.600e-2868.60M48 family peptidase (Fragment) n=1 Tax=Balneolace... [more]
A0A6A8Q1I9_9BACT7.460e-2867.05M48 family metallopeptidase n=1 Tax=Balneolaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84281contigM-pyrifera_M_contig84281:617..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score122.9
Seed ortholog evalue7.6e-26
Seed eggNOG ortholog1121104.AQXH01000001_gene2061
Preferred namehtpX_2
KEGG rclassRC00141
KEGG koko:K06013
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Zn-dependent protease with chaperone function
EggNOG OGs4NESF@976,COG0501@1,COG0501@2
EC3.4.24.84
COG Functional cat.O
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.430077-CDS-M-pyrifera_M_contig84281:616..8801622816750.430077-CDS-M-pyrifera_M_contig84281:616..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84281 617..880 +
1692278156.2472274-CDS-M-pyrifera_M_contig84281:616..8801692278156.2472274-CDS-M-pyrifera_M_contig84281:616..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84281 617..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84281.19661.1prot_M-pyrifera_M_contig84281.19661.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84281 617..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84281.19661.1

>prot_M-pyrifera_M_contig84281.19661.1 ID=prot_M-pyrifera_M_contig84281.19661.1|Name=mRNA_M-pyrifera_M_contig84281.19661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MNIYLIIIITAIAVDFILDLTSNLLNISSLSKKLPEEFSEVYDEKTYAKS
QEYTKTKTKFGFITGSFDLVLLLTFWFIGGLNVLDQCI
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mRNA from alignment at M-pyrifera_M_contig84281:617..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84281.19661.1 ID=mRNA_M-pyrifera_M_contig84281.19661.1|Name=mRNA_M-pyrifera_M_contig84281.19661.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig84281:617..880+ (Macrocystis pyrifera P11B4 male)
ATGAACATTTATCTAATCATAATTATTACAGCTATTGCGGTCGATTTTAT
TCTCGACCTAACCTCGAATTTACTTAATATTAGTTCGCTAAGTAAAAAAC
TCCCAGAGGAATTTTCCGAAGTTTATGACGAAAAAACCTACGCAAAGTCA
CAGGAGTATACGAAAACCAAAACAAAATTTGGATTTATAACGGGGAGCTT
TGACTTAGTTTTACTCCTCACTTTTTGGTTTATTGGGGGTTTGAATGTGC
TGGACCAGTGTATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84281:617..880+

>mRNA_M-pyrifera_M_contig84281.19661.1 ID=mRNA_M-pyrifera_M_contig84281.19661.1|Name=mRNA_M-pyrifera_M_contig84281.19661.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig84281:617..880+ (Macrocystis pyrifera P11B4 male)
ATGAACATTTATCTAATCATAATTATTACAGCTATTGCGGTCGATTTTAT
TCTCGACCTAACCTCGAATTTACTTAATATTAGTTCGCTAAGTAAAAAAC
TCCCAGAGGAATTTTCCGAAGTTTATGACGAAAAAACCTACGCAAAGTCA
CAGGAGTATACGAAAACCAAAACAAAATTTGGATTTATAACGGGGAGCTT
TGACTTAGTTTTACTCCTCACTTTTTGGTTTATTGGGGGTTTGAATGTGC
TGGACCAGTGTATAATGAACATTTATCTAATCATAATTATTACAGCTATT
GCGGTCGATTTTATTCTCGACCTAACCTCGAATTTACTTAATATTAGTTC
GCTAAGTAAAAAACTCCCAGAGGAATTTTCCGAAGTTTATGACGAAAAAA
CCTACGCAAAGTCACAGGAGTATACGAAAACCAAAACAAAATTTGGATTT
ATAACGGGGAGCTTTGACTTAGTTTTACTCCTCACTTTTTGGTTTATTGG
GGGTTTGAATGTGCTGGACCAGTGTATA
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