mRNA_M-pyrifera_M_contig84277.19660.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84277.19660.1
Unique NamemRNA_M-pyrifera_M_contig84277.19660.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A6H5JW07_9PHAE (UTP15_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW07_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.070e-37
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:   22 KVRSGHSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGHVLELSHGAPVEACLFLPGGGLCVTAGGNEVK 243
            +VR GH+DYVRALAASPSSPDTW+SGSYDHT KMWD RQP+ +VLELSHGAPVEACLFLPGGGLCV+AGGNEVK
Sbjct:  157 QVRQGHADYVRALAASPSSPDTWISGSYDHTVKMWDTRQPKRNVLELSHGAPVEACLFLPGGGLCVSAGGNEVK 230
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A8K1FPI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPI2_PYTOL)

HSP 1 Score: 93.6 bits (231), Expect = 2.500e-20
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   37 HSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPE----GHVLELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            H+DYVR  AASPSS   W +GSYDHT K+WD+R  +       + L HGAPVEAC  +PGGGL ++AGGN VKV
Sbjct:  166 HTDYVRCSAASPSSQSIWATGSYDHTVKLWDLRASDQTMSSSTMSLDHGAPVEACFMMPGGGLLMSAGGNVVKV 239
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A1D1YYC4_9ARAE (U3 small nucleolar RNA-associated protein 15 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YYC4_9ARAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.660e-20
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:   25 VRSGHSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGHVLELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            + + H DY+RA +ASP SP+ + +GSYDHT ++WD+R+P G V  L+HG PVE  LFLP GGL  TAGG  VK+
Sbjct:  205 IPAAHKDYIRAGSASPVSPELFATGSYDHTVRLWDVREPSGSVSALNHGDPVECVLFLPSGGLIATAGGTVVKI 278
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A2V0NRD8_9CHLO (UTP15_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRD8_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 4.880e-20
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   37 HSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQ-------PEGHVLELSHGAPVEACLFLPGGGLCVTAGGNEV 240
            H+DYVR+LAASP+S D WL+GSYDHTAK+WD+R          G V+ L HGAPVE   F P GG+ VTAGGN +
Sbjct:  167 HTDYVRSLAASPASSDAWLTGSYDHTAKLWDVRAGGSRGGXXXGAVMSLDHGAPVEDVAFFPSGGMAVTAGGNTL 241
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A484EDC8_BRELC (UTP15_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDC8_BRELC)

HSP 1 Score: 92.0 bits (227), Expect = 8.700e-20
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   37 HSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGHV----LELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            HSDYVR+  A+PSS + W +GSYDHT K+WD+R  +  V    + L+HGAPVEAC+ +PGG L ++AGGN +KV
Sbjct:  166 HSDYVRSSGANPSSHNIWATGSYDHTVKLWDLRTSDQTVSKSSMSLNHGAPVEACMIMPGGSLLLSAGGNSIKV 239
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A5D6XGD7_9STRA (UTP15_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGD7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.790e-20
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:   37 HSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGHV----LELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            H DYVR+ AASPSS   W +GSYDHT K+WD+R  +  V    + L+HGAPVEA L +PGGGL ++AGGN VKV
Sbjct:  166 HKDYVRSSAASPSSQHIWATGSYDHTVKLWDLRAADQSVAASTMSLNHGAPVEATLIMPGGGLLMSAGGNVVKV 239
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A1V9YVE1_9STRA (U3 small nucleolar RNA-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVE1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.620e-19
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   25 VRSGHSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGH----VLELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            V  GH+DYVRA+AA P+S   W +GSYDHT K+WDMR          + + HGAPVEA L LPGG L ++AGG ++KV
Sbjct:  158 VMGGHTDYVRAVAAHPASSSMWATGSYDHTVKLWDMRNAGSASTKATMSMDHGAPVEAVLMLPGGNLAISAGGTDIKV 235
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: K3WRP8_GLOUD (UTP15_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRP8_GLOUD)

HSP 1 Score: 91.3 bits (225), Expect = 1.660e-19
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:   37 HSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGHV----LELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            H DY+R  AASPSS + W +GSYDHT K+WD+R  +  V    + L+HGAPVEA + +PGGGL ++AGGN VKV
Sbjct:  166 HKDYIRTSAASPSSQNVWATGSYDHTVKLWDLRASDQTVSASTMSLNHGAPVEATMIMPGGGLLMSAGGNVVKV 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: D8UBR8_VOLCA (UTP15_C domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UBR8_VOLCA)

HSP 1 Score: 91.3 bits (225), Expect = 1.660e-19
Identity = 43/71 (60.56%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   34 GHSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGHVLELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            GH DYVRA AASP+SPD W +G YDH  K+WD+R     VL L HGAPVE   F P G L VTAGGN + V
Sbjct:  167 GHRDYVRAAAASPTSPDMWATGGYDHCVKLWDIRTGNTAVLGLDHGAPVEDVAFFPSGSLAVTAGGNYLCV 237
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BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Match: A0A4S8JDD2_MUSBA (UTP15_C domain-containing protein n=4 Tax=Musaceae TaxID=4637 RepID=A0A4S8JDD2_MUSBA)

HSP 1 Score: 90.9 bits (224), Expect = 2.330e-19
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   37 HSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGH--VLELSHGAPVEACLFLPGGGLCVTAGGNEVKV 246
            H DY+RA +ASP+ P+ + +GSYDHT K+WD+R P G   +L  SHG PVE+ LFLP GGL  TAGGN VK+
Sbjct:  182 HRDYIRAGSASPTGPEVFATGSYDHTVKLWDVRSPPGSNLLLGFSHGDPVESVLFLPSGGLLATAGGNVVKI 253
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84277.19660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW07_9PHAE2.070e-3786.49UTP15_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A8K1FPI2_PYTOL2.500e-2058.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1D1YYC4_9ARAE2.660e-2055.41U3 small nucleolar RNA-associated protein 15 (Frag... [more]
A0A2V0NRD8_9CHLO4.880e-2058.67UTP15_C domain-containing protein n=1 Tax=Raphidoc... [more]
A0A484EDC8_BRELC8.700e-2055.41UTP15_C domain-containing protein n=1 Tax=Bremia l... [more]
A0A5D6XGD7_9STRA8.790e-2059.46UTP15_C domain-containing protein n=1 Tax=Pythium ... [more]
A0A1V9YVE1_9STRA1.620e-1953.85U3 small nucleolar RNA-associated protein n=1 Tax=... [more]
K3WRP8_GLOUD1.660e-1956.76UTP15_C domain-containing protein n=1 Tax=Globispo... [more]
D8UBR8_VOLCA1.660e-1960.56UTP15_C domain-containing protein n=1 Tax=Volvox c... [more]
A0A4S8JDD2_MUSBA2.330e-1958.33UTP15_C domain-containing protein n=4 Tax=Musaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84277contigM-pyrifera_M_contig84277:550..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog42099.EPrPV00000019552
Preferred nameUTP15
KEGG koko:K14549
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022603,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045765,GO:0045766,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901342,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1904018,GO:1990904,GO:2000026,GO:2000112,GO:2000232,GO:2000234,GO:2001141
EggNOG free text desc.U3 small nucleolar RNA-associated protein. Source PGD
EggNOG OGs1MAGG@121069,KOG0310@1,KOG0310@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.3909287-CDS-M-pyrifera_M_contig84277:549..8251622816750.3909287-CDS-M-pyrifera_M_contig84277:549..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84277 550..825 +
1692278156.2271698-CDS-M-pyrifera_M_contig84277:549..8251692278156.2271698-CDS-M-pyrifera_M_contig84277:549..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84277 550..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84277.19660.1prot_M-pyrifera_M_contig84277.19660.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84277 550..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84277.19660.1

>prot_M-pyrifera_M_contig84277.19660.1 ID=prot_M-pyrifera_M_contig84277.19660.1|Name=mRNA_M-pyrifera_M_contig84277.19660.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MVALSGGKVRSGHSDYVRALAASPSSPDTWLSGSYDHTAKMWDMRQPEGH
VLELSHGAPVEACLFLPGGGLCVTAGGNEVKVRGGGGGGGKL
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mRNA from alignment at M-pyrifera_M_contig84277:550..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84277.19660.1 ID=mRNA_M-pyrifera_M_contig84277.19660.1|Name=mRNA_M-pyrifera_M_contig84277.19660.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig84277:550..825+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCGTTATCCGGAGGGAAGGTCCGCTCAGGCCACTCGGACTACGT
GCGCGCTCTGGCGGCCTCCCCGTCCAGCCCGGACACTTGGCTGTCTGGAT
CGTACGACCACACGGCCAAGATGTGGGACATGCGACAACCCGAAGGGCAC
GTGTTGGAGCTGTCCCACGGTGCTCCGGTGGAGGCGTGCTTGTTTTTACC
CGGGGGGGGGCTGTGTGTAACAGCCGGAGGAAATGAGGTCAAGGTGAGGG
GGGGGGGGGGGGGGGGGGGGAAGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84277:550..825+

>mRNA_M-pyrifera_M_contig84277.19660.1 ID=mRNA_M-pyrifera_M_contig84277.19660.1|Name=mRNA_M-pyrifera_M_contig84277.19660.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig84277:550..825+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCGTTATCCGGAGGGAAGGTCCGCTCAGGCCACTCGGACTACGT
GCGCGCTCTGGCGGCCTCCCCGTCCAGCCCGGACACTTGGCTGTCTGGAT
CGTACGACCACACGGCCAAGATGTGGGACATGCGACAACCCGAAGGGCAC
GTGTTGGAGCTGTCCCACGGTGCTCCGGTGGAGGCGTGCTTGTTTTTACC
CGGGGGGGGGCTGTGTGTAACAGCCGGAGGAAATGAGGTCAAGGTGAGGG
GGGGGGGGGGGGGGGGGGGGAAGTTGATGGTGGCGTTATCCGGAGGGAAG
GTCCGCTCAGGCCACTCGGACTACGTGCGCGCTCTGGCGGCCTCCCCGTC
CAGCCCGGACACTTGGCTGTCTGGATCGTACGACCACACGGCCAAGATGT
GGGACATGCGACAACCCGAAGGGCACGTGTTGGAGCTGTCCCACGGTGCT
CCGGTGGAGGCGTGCTTGTTTTTACCCGGGGGGGGGCTGTGTGTAACAGC
CGGAGGAAATGAGGTCAAGGTGAGGGGGGGGGGGGGGGGGGGGGGGAAGT
TG
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