mRNA_M-pyrifera_M_contig84250.19657.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84250.19657.1
Unique NamemRNA_M-pyrifera_M_contig84250.19657.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A518A1Y9_9PLAN (30S ribosomal protein S1 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518A1Y9_9PLAN)

HSP 1 Score: 548 bits (1413), Expect = 6.580e-189
Identity = 277/293 (94.54%), Postives = 285/293 (97.27%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LYRPYRPKRTSRAA ARKHGFEPLANAIWAGD  +TDLNVAAEQYIKDEEGAQTTEDVLKG ADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEE GQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEE+SAR SI +HLKL+GHRF+EFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYC+ATDLVYVTGSAEKKD+AR KLAD+MTEHNCKLVAIGNGTACRETEEIITEM
Sbjct:  116 LYRPYRPKRTSRAATARKHGFEPLANAIWAGDDSITDLNVAAEQYIKDEEGAQTTEDVLKGAADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEESGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEESARQSIATHLKLDGHRFNEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCLATDLVYVTGSAEKKDYARKKLADIMTEHNCKLVAIGNGTACRETEEIITEM 408          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A517RB40_9PLAN (30S ribosomal protein S1 n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RB40_9PLAN)

HSP 1 Score: 500 bits (1288), Expect = 5.440e-170
Identity = 253/293 (86.35%), Postives = 268/293 (91.47%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LYRPYRPKRTSRAA ARKHGFEPLANAIWAGDA + +L  AA+QY K EEGA+TT+DVLKG ADIL EKIGEDPDVRDISR+IAWRSG+L V ATKKAEE GQEYRDYFNYSE+ VKVPHHRTMA+NRGEKSGALRVRFEW EDSA  SI+ HL L  HRF  FL EVVTDALQRLILPSL+REIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQG+RILAIDPGLRTGCKLAVLDE+G CVATDLVYVTGSAEKKD+ARNKLA+MMTEH CKLVAIGNGTACRETEEIITEM
Sbjct:  116 LYRPYRPKRTSRAATARKHGFEPLANAIWAGDASIQNLTEAAKQYTKAEEGARTTDDVLKGAADILAEKIGEDPDVRDISRKIAWRSGRLAVTATKKAEESGQEYRDYFNYSEQVVKVPHHRTMAMNRGEKSGALRVRFEWAEDSACLSIIRHLNLNDHRFHSFLKEVVTDALQRLILPSLDREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGQRILAIDPGLRTGCKLAVLDEMGNCVATDLVYVTGSAEKKDYARNKLAEMMTEHQCKLVAIGNGTACRETEEIITEM 408          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A517X727_9PLAN (30S ribosomal protein S1 n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X727_9PLAN)

HSP 1 Score: 500 bits (1288), Expect = 5.930e-170
Identity = 253/293 (86.35%), Postives = 269/293 (91.81%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LYRPYRPKRTSRAA ARKHGFEPLANAIWAGDA + +L  AA QY K E+GA+TTEDVLKG ADILVEKIGEDPDVR+ISR+IAWRSGKLTVNATKKAEE GQEYRDYFNYSE+ VKVPHHRTMALNRGEKSGALRVRFEW +DSA  SI  HL L GHRF EFLTEV+ DAL RLI PSL+REIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQG+RILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSA+KK+FAR KLA++MTEH C+LVAIGNGTACRETEEIITEM
Sbjct:  116 LYRPYRPKRTSRAATARKHGFEPLANAIWAGDASIDNLTNAALQYTKAEDGARTTEDVLKGAADILVEKIGEDPDVREISRKIAWRSGKLTVNATKKAEESGQEYRDYFNYSEQVVKVPHHRTMALNRGEKSGALRVRFEWADDSACMSIARHLNLNGHRFHEFLTEVINDALSRLIQPSLDREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGQRILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSADKKEFARKKLAEVMTEHQCQLVAIGNGTACRETEEIITEM 408          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A517X2T5_9PLAN (30S ribosomal protein S1 n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X2T5_9PLAN)

HSP 1 Score: 461 bits (1185), Expect = 1.330e-154
Identity = 232/293 (79.18%), Postives = 257/293 (87.71%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LYRPYRPKRTSRAA ARK GFEPLA+AIW GDA + DL+  A +Y K EEGA+TT++VLKG ADIL EKIGED DVR+ISR+IAW+SG+L  NATK AEE GQEYRDYF +SE  VKVPHHRT+A+NRGEKSGALRVRFEW+E+SA  SI   L L  HRF++FLT+V+ DA QRLILPSLEREIRRELTEKAEKHAVSVFA NLKNLLLQPPL+GERILAIDPGLRTGCKLAVLDELG C+A DLVYVTGSAEKKD+ARNKLA+ M EH C+LVAIGNGTACRETEEIITEM
Sbjct:  116 LYRPYRPKRTSRAATARKRGFEPLADAIWKGDAHIEDLSKEALKYTKGEEGARTTDEVLKGAADILAEKIGEDADVREISRKIAWKSGRLVANATKNAEESGQEYRDYFKFSEHVVKVPHHRTLAMNRGEKSGALRVRFEWDEESACTSIARQLNLSHHRFAKFLTQVINDAQQRLILPSLEREIRRELTEKAEKHAVSVFASNLKNLLLQPPLRGERILAIDPGLRTGCKLAVLDELGNCLANDLVYVTGSAEKKDYARNKLAEFMQEHECRLVAIGNGTACRETEEIITEM 408          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A3L7USU6_9BACT (RNA-binding transcriptional accessory protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7USU6_9BACT)

HSP 1 Score: 345 bits (886), Expect = 1.300e-109
Identity = 169/293 (57.68%), Postives = 223/293 (76.11%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LY P++PKR SRA+AAR+ G EPLA  IW+GD  L DLNVAA  ++  E+   +T +VL+G ADIL E I E+  +R++ R++AW++GKL+   TK   E G EYRDYF ++E A ++P HR +A+NRGEKSGALR++FEW++ + +     H   E H   EFL   + DA+QRLI PSLEREIRREL++KAE HA+ VFA+NL++LLLQPPL+G+R+LAIDPG RTGCK+AVLDE G  VA D+VYVTGSAEK+     KLA+M+ +HNC++V IGNGTACRETE+++TEM
Sbjct:  109 LYLPFKPKRQSRASAARERGLEPLAARIWSGDPELIDLNVAAAAFVNAEKELPSTVEVLQGAADILAENISEEAALRELCRQLAWKTGKLSGTPTKAGSESGHEYRDYFEFTEAASRIPPHRVLAVNRGEKSGALRIKFEWDDAAVQAVCDGHYDWESHSHREFLKACLADAVQRLIQPSLEREIRRELSDKAEAHAIDVFARNLRSLLLQPPLRGQRVLAIDPGFRTGCKVAVLDECGNLVAADVVYVTGSAEKRATFSAKLAEMLRQHNCQVVVIGNGTACRETEDLVTEM 401          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A517Z284_9PLAN (30S ribosomal protein S1 n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z284_9PLAN)

HSP 1 Score: 336 bits (862), Expect = 1.540e-106
Identity = 168/293 (57.34%), Postives = 209/293 (71.33%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LY PYRPKR SRA AAR+ G EP A+AIW  D    +L   A  ++  E+     + VL+G ADIL E+IGEDP VRD  R+I WR+G+L   A     E  + YRDYF YSE   KVP HR +ALNRGEK  ALR++  W +++   +I   L L  HRF +FL E   DA QRL+  SLERE+RRELTE+AE+HAVSVFA+NL+NLLLQPPL+GER+LAIDPG RTGCK+ VLDELG  +  D+VYVTGSAEK+   + KLA+++  H C+L+AIGNGTACRETEE++ EM
Sbjct:  104 LYLPYRPKRKSRAEAARQRGLEPFADAIWNADKSFANLKARAADFVDPEKELADVDAVLQGTADILAERIGEDPAVRDEVRKITWRTGQLNSKAVDATAEAAKPYRDYFEYSEAVAKVPPHRVLALNRGEKEKALRIKLTWNDEAVLGAIDRILGLSSHRFGDFLQECAADATQRLLHASLEREVRRELTERAEEHAVSVFARNLRNLLLQPPLKGERVLAIDPGFRTGCKIVVLDELGGLLTHDVVYVTGSAEKRVATKQKLANLLASHECRLIAIGNGTACRETEELVAEM 396          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A3B1D7M7_9ZZZZ (Transcription accessory protein (S1 RNA-binding domain) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1D7M7_9ZZZZ)

HSP 1 Score: 333 bits (855), Expect = 3.700e-106
Identity = 172/295 (58.31%), Postives = 211/295 (71.53%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHR--FSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LY PY+PKR +RA  AR+ G EP A  IW  D+ +T L   AE+Y+  E+     E VLKGV+DI+ E+I E  +VR   R IA  +GKL V  TKK +E GQE+RDYF YSE   K+P HR MALNRGEKS  LR++FEW+ D A    V  L +      F  F  E  TDA+ RL+LPSLERE+RRELTEKAEKHAV VFA NL++LLLQPPLQG+++LAIDPG R+GCK+A+LDE G+C+  D+VY TGS EKK  A  KLAD++ EH+C +VAIGNGTACRETEEI+ EM
Sbjct:  105 LYLPYKPKRRTRATIAREQGLEPFAKLIWNDDSTITSLEAYAEKYLDTEKDLPDAEAVLKGVSDIIAEQISEVAEVRQQMRMIAKHTGKLIVKPTKKGKEEGQEFRDYFEYSEAISKIPPHRVMALNRGEKSTHLRIKFEWDADWANRETVKLLNINQRPAPFINFWKETSTDAISRLVLPSLERELRRELTEKAEKHAVDVFATNLRSLLLQPPLQGKKVLAIDPGFRSGCKVALLDETGHCLLHDVVYATGSEEKKGAAGKKLADILNEHHCSIVAIGNGTACRETEEIVAEM 399          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A517ZTM9_9PLAN (30S ribosomal protein S1 n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZTM9_9PLAN)

HSP 1 Score: 332 bits (850), Expect = 1.650e-105
Identity = 163/293 (55.63%), Postives = 218/293 (74.40%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LY PYRPK+ +RA  AR+ G E  A  +W+ D  +     AA Q++  E+   T +DVL+G +DIL E+I ED  VR+ +RR+A ++G+L + A  K  E  + +RDYF+YSE   K+P HR +A+NRGE   ALRV+F W+ D+A+   V  LKL  HRF+ F+ +V  DAL RLILPSLERE+RR+LT++AE+HA+ VFA+NL+NLLLQPP++G+R+LAIDPG RTGCK+AVLDE G CVATD+VY+TGS  KK  AR+KLA+++ EH+C L+AIGNGTACRETEEI  E+
Sbjct:  105 LYLPYRPKKRTRAQIARERGLEGFAEQLWSEDPAVDSPRAAAAQHVNPEQELATADDVLQGASDILAERIAEDGSVRESARRVALKTGRLKITAAGK--EADESFRDYFDYSEAVSKIPPHRVLAINRGETESALRVKFVWDGDAAQAKTVRLLKLNEHRFALFMMDVSADALSRLILPSLERELRRDLTQRAEQHAIEVFARNLRNLLLQPPVRGQRVLAIDPGFRTGCKIAVLDETGNCVATDVVYITGSQSKKAAARDKLAELVAEHSCHLIAIGNGTACRETEEIAAEL 395          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: A0A518CK23_9PLAN (30S ribosomal protein S1 n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CK23_9PLAN)

HSP 1 Score: 332 bits (851), Expect = 9.370e-105
Identity = 165/293 (56.31%), Postives = 211/293 (72.01%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LY PYRPKR SRAA AR+ G EPLA  +      LTDLN AA+ Y+   +     E VL+GV+D+L E I E PD+R   RRIAW++G++ V    +  E  Q +RDYF+Y E   K+P HR +A+NRGEKS  LRV+F W+ +S       HL L+ HRF EF+   + D + RLI PSLERE+RRELTEKAE HAV VFAQNL+NLLLQPP++GE++LA+DPG RTGCKLAVLDE G C+  D++YVTGS EK+   R+KL +++ EH+ KL+A+GNGTACRETEE+I+EM
Sbjct:  105 LYLPYRPKRRSRAAQARERGLEPLAELVRKQSEELTDLNAAAQAYVDPAQELPDLETVLQGVSDLLAEGISEQPDLRHSCRRIAWKTGEMVVTVIGEPSEKAQAFRDYFDYKELVSKIPAHRILAINRGEKSNFLRVKFNWDGESVLRQAREHLALDQHRFKEFMEGCLVDCITRLIHPSLEREVRRELTEKAEDHAVDVFAQNLRNLLLQPPVRGEKVLAVDPGFRTGCKLAVLDEHGNCLRHDVMYVTGSEEKRAANRDKLVEILNEHDVKLIAVGNGTACRETEELISEM 397          
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Match: UPI001424A424 (RNA-binding transcriptional accessory protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001424A424)

HSP 1 Score: 320 bits (820), Expect = 4.810e-101
Identity = 160/293 (54.61%), Postives = 210/293 (71.67%), Query Frame = 1
Query:    1 LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEEGAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEELGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSIVSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSVFAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVTGSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM 879
            LY PYRPKR SRA  A++ G EPLA+AIW  +  +TDL+ AA +Y+  E+   + ED L G +DIL E+I E   +RD  R++A  +GKL + ATK  +E G ++RDYF+YSE+  K+P HR +A+NRGE +G LRVRF W +  A  ++  H +   HRFS+FLT   +DAL RLI PSL+REIRRELTE AE+HAV VFAQNL++LLL  PL   R++AIDPG RTGCK+A LDE G  +A D++ + G  E+K  AR KL D + EHN KL+AIGNGTACRETEE+++E+
Sbjct:  105 LYLPYRPKRQSRATKAKERGLEPLADAIW--NQTITDLSQAAAEYVDSEKEVGSAEDALNGASDILAERISETAAIRDACRKLANDTGKLEIQATKAGKENGSDFRDYFDYSEQVSKIPPHRVLAINRGENTGMLRVRFTWNDARAEVTVSFHYRFPDHRFSQFLTNCASDALSRLIKPSLDREIRRELTEAAERHAVEVFAQNLRSLLLGAPLPNTRVVAIDPGFRTGCKIAALDESGNLIAHDVISILGKDEQKAEARQKLHDFLAEHNAKLIAIGNGTACRETEELVSEL 395          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84250.19657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A1Y9_9PLAN6.580e-18994.5430S ribosomal protein S1 n=9 Tax=Gimesia TaxID=164... [more]
A0A517RB40_9PLAN5.440e-17086.3530S ribosomal protein S1 n=2 Tax=Gimesia TaxID=164... [more]
A0A517X727_9PLAN5.930e-17086.3530S ribosomal protein S1 n=9 Tax=Planctomycetaceae... [more]
A0A517X2T5_9PLAN1.330e-15479.1830S ribosomal protein S1 n=2 Tax=Gimesia aquarii T... [more]
A0A3L7USU6_9BACT1.300e-10957.68RNA-binding transcriptional accessory protein n=2 ... [more]
A0A517Z284_9PLAN1.540e-10657.3430S ribosomal protein S1 n=1 Tax=Maioricimonas rar... [more]
A0A3B1D7M7_9ZZZZ3.700e-10658.31Transcription accessory protein (S1 RNA-binding do... [more]
A0A517ZTM9_9PLAN1.650e-10555.6330S ribosomal protein S1 n=3 Tax=Symmachiella TaxI... [more]
A0A518CK23_9PLAN9.370e-10556.3130S ribosomal protein S1 n=1 Tax=Polystyrenella lo... [more]
UPI001424A4244.810e-10154.61RNA-binding transcriptional accessory protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84250contigM-pyrifera_M_contig84250:2..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score506.1
Seed ortholog evalue1.1e-140
Seed eggNOG ortholog344747.PM8797T_18664
Preferred nametex
KEGG koko:K06959
Hectar predicted targeting categoryother localisation
EggNOG free text desc.S1, RNA binding domain
EggNOG OGs2IY4J@203682,COG2183@1,COG2183@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size879
Cds size879
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.1146395-CDS-M-pyrifera_M_contig84250:1..8801622816750.1146395-CDS-M-pyrifera_M_contig84250:1..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84250 2..880 +
1692278156.007435-CDS-M-pyrifera_M_contig84250:1..8801692278156.007435-CDS-M-pyrifera_M_contig84250:1..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84250 2..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84250.19657.1prot_M-pyrifera_M_contig84250.19657.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84250 2..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84250.19657.1

>prot_M-pyrifera_M_contig84250.19657.1 ID=prot_M-pyrifera_M_contig84250.19657.1|Name=mRNA_M-pyrifera_M_contig84250.19657.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=293bp
LYRPYRPKRTSRAAAARKHGFEPLANAIWAGDAGLTDLNVAAEQYIKDEE
GAQTTEDVLKGVADILVEKIGEDPDVRDISRRIAWRSGKLTVNATKKAEE
LGQEYRDYFNYSERAVKVPHHRTMALNRGEKSGALRVRFEWEEDSARHSI
VSHLKLEGHRFSEFLTEVVTDALQRLILPSLEREIRRELTEKAEKHAVSV
FAQNLKNLLLQPPLQGERILAIDPGLRTGCKLAVLDELGYCVATDLVYVT
GSAEKKDFARNKLADMMTEHNCKLVAIGNGTACRETEEIITEM
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mRNA from alignment at M-pyrifera_M_contig84250:2..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84250.19657.1 ID=mRNA_M-pyrifera_M_contig84250.19657.1|Name=mRNA_M-pyrifera_M_contig84250.19657.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=879bp|location=Sequence derived from alignment at M-pyrifera_M_contig84250:2..880+ (Macrocystis pyrifera P11B4 male)
CTTTACCGCCCTTATCGTCCCAAACGCACCTCCCGTGCCGCGGCTGCCCG TAAGCATGGCTTCGAACCACTGGCGAATGCGATCTGGGCCGGCGATGCAG GGCTGACGGATTTAAACGTCGCCGCAGAACAATACATCAAAGACGAAGAA GGCGCACAGACGACCGAAGATGTTCTCAAAGGGGTCGCCGACATCCTGGT GGAAAAGATCGGCGAAGACCCCGATGTGCGCGACATCTCCCGTCGGATTG CCTGGCGTTCCGGAAAGCTGACGGTCAACGCGACTAAAAAAGCAGAAGAG CTGGGCCAGGAATATCGCGATTATTTCAACTACTCCGAACGGGCCGTGAA GGTTCCGCACCATCGGACCATGGCACTCAACCGCGGAGAGAAATCGGGAG CGCTGCGGGTTCGGTTTGAGTGGGAAGAAGATTCGGCGCGACATTCCATT GTAAGTCACCTCAAGCTGGAAGGTCATCGTTTCAGCGAGTTTCTGACCGA AGTGGTTACCGATGCCCTGCAACGTCTGATCCTGCCGAGCCTGGAACGGG AAATCCGTCGCGAGCTGACCGAGAAAGCCGAAAAACATGCGGTCTCTGTC TTCGCCCAGAACCTGAAAAACCTGCTGCTGCAGCCTCCCCTGCAGGGAGA ACGGATTCTGGCGATCGACCCGGGTTTGCGCACAGGCTGTAAACTGGCGG TGCTCGATGAACTCGGTTACTGCGTGGCGACCGACCTGGTGTATGTGACC GGTTCTGCAGAGAAGAAAGATTTCGCGCGGAACAAACTGGCCGACATGAT GACCGAGCACAACTGTAAGCTGGTCGCGATTGGAAACGGCACCGCGTGCC GGGAAACGGAAGAGATCATCACCGAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84250:2..880+

>mRNA_M-pyrifera_M_contig84250.19657.1 ID=mRNA_M-pyrifera_M_contig84250.19657.1|Name=mRNA_M-pyrifera_M_contig84250.19657.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1758bp|location=Sequence derived from alignment at M-pyrifera_M_contig84250:2..880+ (Macrocystis pyrifera P11B4 male)
CTTTACCGCCCTTATCGTCCCAAACGCACCTCCCGTGCCGCGGCTGCCCG
TAAGCATGGCTTCGAACCACTGGCGAATGCGATCTGGGCCGGCGATGCAG
GGCTGACGGATTTAAACGTCGCCGCAGAACAATACATCAAAGACGAAGAA
GGCGCACAGACGACCGAAGATGTTCTCAAAGGGGTCGCCGACATCCTGGT
GGAAAAGATCGGCGAAGACCCCGATGTGCGCGACATCTCCCGTCGGATTG
CCTGGCGTTCCGGAAAGCTGACGGTCAACGCGACTAAAAAAGCAGAAGAG
CTGGGCCAGGAATATCGCGATTATTTCAACTACTCCGAACGGGCCGTGAA
GGTTCCGCACCATCGGACCATGGCACTCAACCGCGGAGAGAAATCGGGAG
CGCTGCGGGTTCGGTTTGAGTGGGAAGAAGATTCGGCGCGACATTCCATT
GTAAGTCACCTCAAGCTGGAAGGTCATCGTTTCAGCGAGTTTCTGACCGA
AGTGGTTACCGATGCCCTGCAACGTCTGATCCTGCCGAGCCTGGAACGGG
AAATCCGTCGCGAGCTGACCGAGAAAGCCGAAAAACATGCGGTCTCTGTC
TTCGCCCAGAACCTGAAAAACCTGCTGCTGCAGCCTCCCCTGCAGGGAGA
ACGGATTCTGGCGATCGACCCGGGTTTGCGCACAGGCTGTAAACTGGCGG
TGCTCGATGAACTCGGTTACTGCGTGGCGACCGACCTGGTGTATGTGACC
GGTTCTGCAGAGAAGAAAGATTTCGCGCGGAACAAACTGGCCGACATGAT
GACCGAGCACAACTGTAAGCTGGTCGCGATTGGAAACGGCACCGCGTGCC
GGGAAACGGAAGAGATCATCACCGAGATGCTTTACCGCCCTTATCGTCCC
AAACGCACCTCCCGTGCCGCGGCTGCCCGTAAGCATGGCTTCGAACCACT
GGCGAATGCGATCTGGGCCGGCGATGCAGGGCTGACGGATTTAAACGTCG
CCGCAGAACAATACATCAAAGACGAAGAAGGCGCACAGACGACCGAAGAT
GTTCTCAAAGGGGTCGCCGACATCCTGGTGGAAAAGATCGGCGAAGACCC
CGATGTGCGCGACATCTCCCGTCGGATTGCCTGGCGTTCCGGAAAGCTGA
CGGTCAACGCGACTAAAAAAGCAGAAGAGCTGGGCCAGGAATATCGCGAT
TATTTCAACTACTCCGAACGGGCCGTGAAGGTTCCGCACCATCGGACCAT
GGCACTCAACCGCGGAGAGAAATCGGGAGCGCTGCGGGTTCGGTTTGAGT
GGGAAGAAGATTCGGCGCGACATTCCATTGTAAGTCACCTCAAGCTGGAA
GGTCATCGTTTCAGCGAGTTTCTGACCGAAGTGGTTACCGATGCCCTGCA
ACGTCTGATCCTGCCGAGCCTGGAACGGGAAATCCGTCGCGAGCTGACCG
AGAAAGCCGAAAAACATGCGGTCTCTGTCTTCGCCCAGAACCTGAAAAAC
CTGCTGCTGCAGCCTCCCCTGCAGGGAGAACGGATTCTGGCGATCGACCC
GGGTTTGCGCACAGGCTGTAAACTGGCGGTGCTCGATGAACTCGGTTACT
GCGTGGCGACCGACCTGGTGTATGTGACCGGTTCTGCAGAGAAGAAAGAT
TTCGCGCGGAACAAACTGGCCGACATGATGACCGAGCACAACTGTAAGCT
GGTCGCGATTGGAAACGGCACCGCGTGCCGGGAAACGGAAGAGATCATCA
CCGAGATG
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