mRNA_M-pyrifera_M_contig84238.19651.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84238.19651.1
Unique NamemRNA_M-pyrifera_M_contig84238.19651.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S0ATD0_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ATD0_9DINO)

HSP 1 Score: 120 bits (300), Expect = 1.960e-30
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 LMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQH 237
            L+R +  HARRVP+ AGSLLLW+S+L HQ + GG R+AQP+CWEPR RR E AR RKLRLAALGLPSTHWASLG+ H
Sbjct:  277 LIRGWEEHARRVPMPAGSLLLWNSKLFHQSWIGGPRIAQPLCWEPRSRRDEGARERKLRLAALGLPSTHWASLGLPH 353          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S2J091_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2J091_9DINO)

HSP 1 Score: 113 bits (283), Expect = 1.300e-29
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   31 ARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHDFTPA 252
            ARRVPV AG+LLLW+S+ +HQG+ GG RLAQPVCWEP  RR E AR RKLR+AALGLPSTHWASLG  H    A
Sbjct:  131 ARRVPVPAGALLLWNSKTVHQGWRGGPRLAQPVCWEPASRRPEAARERKLRMAALGLPSTHWASLGFPHSMLGA 204          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S2RLG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLG7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.530e-27
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    7 LMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHD 240
            LM+ +++HARRV V  G LLLW SR  HQG++GG RLAQPVCWEPRERR  + R RKL LAALGLPSTH ASLG  H+
Sbjct:  264 LMQGWLSHARRVTVPVGGLLLWSSRTTHQGWSGGPRLAQPVCWEPRERRSAKVRGRKLALAALGLPSTHSASLGQPHN 341          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S0FFM3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FFM3_9DINO)

HSP 1 Score: 108 bits (269), Expect = 7.370e-26
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    7 LMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHDFTPA 252
            L + ++  ARRV    GSLLLW+SRL+HQG+ GG RLAQPVCWEP  RR E AR RK+++AA+GLPSTHW SLG+ H    A
Sbjct:  311 LSQAWLGAARRVSAPPGSLLLWNSRLVHQGWRGGPRLAQPVCWEPAGRRDERARERKMKMAAMGLPSTHWGSLGIPHTLVKA 392          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S2NC27_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NC27_9DINO)

HSP 1 Score: 107 bits (268), Expect = 8.300e-26
Identity = 54/78 (69.23%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    7 LMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHD 240
            L   +  HARRV V AG LLLW+SR LH G+ GG RLAQ VC EP  RR E AR  KLRLAALGLPSTHWA LGMQHD
Sbjct:  278 LAAGWAEHARRVVVPAGGLLLWNSRTLHTGWRGGPRLAQTVCLEPASRRKETARLAKLRLAALGLPSTHWAQLGMQHD 355          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S4RSJ1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RSJ1_9DINO)

HSP 1 Score: 105 bits (261), Expect = 4.660e-25
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 SGLMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQH 237
            + L   ++  A RVPV  GSL LW S+ LHQG++GG RLAQPVCWEP  RR   A  RK+RLAALGLPSTHWASLG+ H
Sbjct:  227 ASLQDSWLAGAGRVPVPRGSLFLWSSKTLHQGWSGGPRLAQPVCWEPMGRRDAAALDRKMRLAALGLPSTHWASLGIPH 305          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S1RF61_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RF61_ALECA)

HSP 1 Score: 105 bits (261), Expect = 6.980e-25
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 SGLMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQH 237
            S L   ++  A RVPV  G L LW SR LHQG++GG RLAQPVCWEP  RR +    RK+RLAALGLPSTHWASLG+ H
Sbjct:  266 SALQDSWLRGAGRVPVPRGGLFLWSSRTLHQGWSGGPRLAQPVCWEPAGRRDDATLDRKMRLAALGLPSTHWASLGIPH 344          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S2MM92_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2MM92_9DINO)

HSP 1 Score: 102 bits (255), Expect = 2.380e-24
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    7 LMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHD 240
            L   +V HARR  V  G L LW+SR +H G+ GG RLAQ VC+EP +RR E  R  K+RLAALGLPSTHWAS GMQHD
Sbjct:  193 LAEGWVQHARRAVVPRGGLFLWNSRTVHTGWRGGPRLAQTVCFEPADRRSEAERIAKMRLAALGLPSTHWASAGMQHD 270          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S1ZFD9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFD9_TRICV)

HSP 1 Score: 99.8 bits (247), Expect = 6.430e-23
Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   31 ARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHDFTP 249
            ARR  V AG LLLW S+ LHQG+ GG RLAQPVCWEP ERR     +RKLRLAALGLPSTH AS G+ H   P
Sbjct:  270 ARRCRVPAGGLLLWSSKTLHQGWMGGPRLAQPVCWEPEERRSLGTLKRKLRLAALGLPSTHSASQGLPHYLVP 342          
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Match: A0A7S4Q534_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q534_9DINO)

HSP 1 Score: 99.8 bits (247), Expect = 8.390e-23
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    7 LMRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGEEARRRKLRLAALGLPSTHWASLGMQHD 240
            L   +   ARR  V AG+LL+WDSR +H G+ GG RLAQ VC EP  RR E  R  KLRLAALGLPSTHWAS+GM+HD
Sbjct:  289 LAAGWARQARRAVVPAGALLVWDSRTVHAGWLGGPRLAQAVCLEPASRRSECHRLAKLRLAALGLPSTHWASVGMEHD 366          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84238.19651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0ATD0_9DINO1.960e-3071.43Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S2J091_9DINO1.300e-2971.62Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S2RLG7_9STRA2.530e-2767.95Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S0FFM3_9DINO7.370e-2660.98Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S2NC27_9DINO8.300e-2669.23Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S4RSJ1_9DINO4.660e-2563.29Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1RF61_ALECA6.980e-2563.29Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2MM92_9DINO2.380e-2462.82Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S1ZFD9_TRICV6.430e-2367.12Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4Q534_9DINO8.390e-2362.82Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84238contigM-pyrifera_M_contig84238:502..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.8922474-CDS-M-pyrifera_M_contig84238:501..7441622816749.8922474-CDS-M-pyrifera_M_contig84238:501..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84238 502..744 -
1692278155.8793006-CDS-M-pyrifera_M_contig84238:501..7441692278155.8793006-CDS-M-pyrifera_M_contig84238:501..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84238 502..744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.9034896-UTR-M-pyrifera_M_contig84238:744..7531622816749.9034896-UTR-M-pyrifera_M_contig84238:744..753Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84238 745..753 -
1692278155.9004946-UTR-M-pyrifera_M_contig84238:744..7531692278155.9004946-UTR-M-pyrifera_M_contig84238:744..753Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84238 745..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84238.19651.1prot_M-pyrifera_M_contig84238.19651.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84238 502..744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84238.19651.1

>prot_M-pyrifera_M_contig84238.19651.1 ID=prot_M-pyrifera_M_contig84238.19651.1|Name=mRNA_M-pyrifera_M_contig84238.19651.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MRDFVTHARRVPVRAGSLLLWDSRLLHQGFAGGARLAQPVCWEPRERRGE
EARRRKLRLAALGLPSTHWASLGMQHDFTPA
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mRNA from alignment at M-pyrifera_M_contig84238:502..753-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84238.19651.1 ID=mRNA_M-pyrifera_M_contig84238.19651.1|Name=mRNA_M-pyrifera_M_contig84238.19651.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig84238:502..753- (Macrocystis pyrifera P11B4 male)
AGCGGGTTAATGCGGGATTTCGTGACACATGCGCGGCGCGTTCCCGTCCG CGCTGGCTCTTTGCTGCTGTGGGATTCGAGGCTGTTGCACCAGGGGTTTG CGGGGGGCGCACGGTTGGCACAGCCTGTGTGCTGGGAGCCGAGGGAGAGG AGAGGGGAGGAGGCAAGGAGACGGAAGTTACGACTCGCTGCCCTCGGCCT CCCATCCACCCACTGGGCGTCTTTGGGAATGCAGCACGACTTCACCCCCG CC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84238:502..753-

>mRNA_M-pyrifera_M_contig84238.19651.1 ID=mRNA_M-pyrifera_M_contig84238.19651.1|Name=mRNA_M-pyrifera_M_contig84238.19651.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig84238:502..753- (Macrocystis pyrifera P11B4 male)
ATGCGGGATTTCGTGACACATGCGCGGCGCGTTCCCGTCCGCGCTGGCTC
TTTGCTGCTGTGGGATTCGAGGCTGTTGCACCAGGGGTTTGCGGGGGGCG
CACGGTTGGCACAGCCTGTGTGCTGGGAGCCGAGGGAGAGGAGAGGGGAG
GAGGCAAGGAGACGGAAGTTACGACTCGCTGCCCTCGGCCTCCCATCCAC
CCACTGGGCGTCTTTGGGAATGCAGCACGACTTCACCCCCGCCATGCGGG
ATTTCGTGACACATGCGCGGCGCGTTCCCGTCCGCGCTGGCTCTTTGCTG
CTGTGGGATTCGAGGCTGTTGCACCAGGGGTTTGCGGGGGGCGCACGGTT
GGCACAGCCTGTGTGCTGGGAGCCGAGGGAGAGGAGAGGGGAGGAGGCAA
GGAGACGGAAGTTACGACTCGCTGCCCTCGGCCTCCCATCCACCCACTGG
GCGTCTTTGGGAATGCAGCACGACTTCACCCCCGCC
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