mRNA_M-pyrifera_M_contig84236.19650.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84236.19650.1
Unique NamemRNA_M-pyrifera_M_contig84236.19650.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 8.250e-12
Identity = 52/141 (36.88%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    1 CPLADDGLSRLGTLLDDRLAAQPEARGDLERLLGRWFGMLGTERGGPLVLVFFGVTGTGKTMSAGLVAEALLEGREAAHGAKHGAPRGFLELEGSMFGSGEDVGR----MRQAVVQHGRECGRGGVILVDEAQKVPLPTLD 411
            CP ADD +      L D + AQP A   L+  L  W     ++R  PLV+   G TGTGKT +A ++A+ALL  R    G     PRG L L G+ +     V      +R+ + Q    CG   V+L DE QK    TLD
Sbjct:   57 CPFADDPVEAARRALQDGILAQPLALESLDGALSSWHYSRQSDRYEPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLNGADYMVAAKVEEYQSLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLD 197          
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Match: A0A5A8CNV9_CAFRO (AAA domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNV9_CAFRO)

HSP 1 Score: 71.6 bits (174), Expect = 8.420e-12
Identity = 55/152 (36.18%), Postives = 71/152 (46.71%), Query Frame = 1
Query:    1 CPLADDGLSRLGTLLDDRLAAQPEARGDLERLLGRWF------GMLGTERGGPLVLVFFGVTGTGKTMSAGLVAEALLEGR-EAAHGAKHGAPRGFLELEGSMF--GSGEDVGRMRQAVVQHGRECGRGGVILVDEAQKVPLPTLDRVLSLL 429
            CP   D    L  LL++R+  Q  A   L   + RW       G  G   GGP+VL   GVTG+GKT +AGLVA +LLE      H +    P G L+L G +F    G     +RQ V      C   GV++ DE QK     +  VL L+
Sbjct:   46 CPWRKDAGQELHRLLNNRIGGQIGAVEQLVDAVERWTVSVQSAGSGGRPAGGPMVLFLSGVTGSGKTTAAGLVARSLLEASVPPQHRSDPLVPEGLLQLNGEVFTEAGGGTPESLRQQVAALAARCSGRGVVVFDEFQKADPSAVSAVLELI 197          
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Match: A0A7S2V512_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V512_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.440e-6
Identity = 44/150 (29.33%), Postives = 68/150 (45.33%), Query Frame = 1
Query:    1 CPLADDGLSRLGTLLDDRLAAQPEARGDLERLLGRWFGMLGTERGG--PLVLVFFGVTGTGKTMSAGLVAEALLEGRE-AAHGAKHGAPRGFLELEGSMFGSGEDVG------RMRQAVVQHGRECGRGGVILVDEAQKVPLPTLDRVLS 423
            CP  +  +  +  LL  R+  Q +A+  +      W   +G ++    PLV+   G TG GKT +A ++AEALL+ RE  +       P G +   G  F   E          ++  +V H R C    V+L DE QK+   TLD ++ 
Sbjct:  164 CPYVEAPIEAVQGLLPQRIKGQEKAQQAILSAFQYW--EMGRKQASQQPLVIAITGPTGVGKTETAHVLAEALLQKREKVSETGDRTRPAGLIIFRGEDFSDAEGAPLAQYHTEIKSRLVNHLRHCAGNAVVLFDEVQKIIPGTLDVIME 311          
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Match: A0A6A3TT52_9STRA (AAA domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TT52_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.620e-5
Identity = 42/144 (29.17%), Postives = 63/144 (43.75%), Query Frame = 1
Query:    1 CPLADDGLSRLGTLLDDRLAAQPEARGDLERLLGRW-FGMLGTERGGPLVLVFFGVTGTGKTMSAGLVAEALLEGREAAHGAKHGAPRGFLELEGSMFGSG------EDVGRMRQAVVQHGRECGRGGVILVDEAQKVPLPTLD 411
            C   D     + + L   L  Q  A   +   +  W F    T+   PLVL   G TGTGKT ++ L+AEAL + ++    ++   P G L   G  F         E   +++  + +H   C    V+++DE QKV   TLD
Sbjct:   45 CTFVDKPSQVVRSHLQQNLKGQERAVEAVVGAIEAWEFSRTSTKDRAPLVLAITGPTGTGKTETSNLIAEALFKRKKKLPNSEKRVPSGLLIFRGEDFSDNFTNPITEYHTQIKTRLAEHLHHCSGKAVVVMDEVQKVIPHTLD 188          
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Match: A0A1V9YTU9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTU9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.960e-5
Identity = 43/136 (31.62%), Postives = 62/136 (45.59%), Query Frame = 1
Query:   40 LLDDRLAAQPEARGDLERLLGRWFGMLGTERGGPLVLVFFGVTGTGKTMSAGLVAEALLEGREAAHGAKHGAPRGFLELEGSMFGSGEDVGRMRQAVVQHG---------RECGRGGVILVDEAQKVPLPTLDRVL 420
            +L++ L  Q  A+  +   L  W      +   P+VL F G+TGTGKTM+A L+A+AL   RE    +    P G L   G+ F   ED         Q           ++C    V++ DE QKV +P +  VL
Sbjct:   18 ILNEHLVGQDRAKEIIVNELKLWHPYDNKQVHQPMVLAFTGLTGTGKTMTATLIADALFNQREKLENSDKTQPAGLLMYSGADF---EDTATSTIKEFQENFKTRLGSQLQKCSGVAVVVFDEIQKV-IPQVVNVL 149          
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Match: A0A1W0A1S8_9STRA (AAA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1S8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.220e-5
Identity = 34/97 (35.05%), Postives = 47/97 (48.45%), Query Frame = 1
Query:  139 PLVLVFFGVTGTGKTMSAGLVAEALLEGREAAHGAKHGAPRGFLELEGSMFGS------GEDVGRMRQAVVQHGRECGRGGVILVDEAQKVPLPTLD 411
            P+VL   G TGTGKT +A L+AEAL + R     +    P G +   G  F         E   +++  +V+H   C    V++ DE QKV   TLD
Sbjct:   86 PMVLAITGPTGTGKTKTATLIAEALFQRRRKLENSIKYEPTGLIVFSGQDFNDVTKNPVTEHQEQIKSRLVEHLSTCSGKAVVVFDEVQKVVPQTLD 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84236.19650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G3V5_ECTSI8.250e-1236.88AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A5A8CNV9_CAFRO8.420e-1236.18AAA domain-containing protein n=5 Tax=Cafeteria ro... [more]
A0A7S2V512_9STRA1.440e-629.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6A3TT52_9STRA1.620e-529.17AAA domain-containing protein n=2 Tax=Phytophthora... [more]
A0A1V9YTU9_9STRA4.960e-531.62Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1W0A1S8_9STRA5.220e-535.05AAA domain-containing protein n=1 Tax=Thraustothec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84236contigM-pyrifera_M_contig84236:330..761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog2880.D7G3V5
Preferred nameTOR4A
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsKOG2170@1,KOG2170@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.8597283-CDS-M-pyrifera_M_contig84236:329..7611622816749.8597283-CDS-M-pyrifera_M_contig84236:329..761Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84236 330..761 -
1692278155.8585675-CDS-M-pyrifera_M_contig84236:329..7611692278155.8585675-CDS-M-pyrifera_M_contig84236:329..761Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84236 330..761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84236.19650.1prot_M-pyrifera_M_contig84236.19650.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84236 330..761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84236.19650.1

>prot_M-pyrifera_M_contig84236.19650.1 ID=prot_M-pyrifera_M_contig84236.19650.1|Name=mRNA_M-pyrifera_M_contig84236.19650.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
CPLADDGLSRLGTLLDDRLAAQPEARGDLERLLGRWFGMLGTERGGPLVL
VFFGVTGTGKTMSAGLVAEALLEGREAAHGAKHGAPRGFLELEGSMFGSG
EDVGRMRQAVVQHGRECGRGGVILVDEAQKVPLPTLDRVLSLLF
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mRNA from alignment at M-pyrifera_M_contig84236:330..761-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84236.19650.1 ID=mRNA_M-pyrifera_M_contig84236.19650.1|Name=mRNA_M-pyrifera_M_contig84236.19650.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig84236:330..761- (Macrocystis pyrifera P11B4 male)
TGCCCTTTGGCGGACGATGGGTTGTCCCGTTTGGGCACTCTGCTGGACGA CCGCCTGGCAGCGCAGCCGGAAGCGCGAGGCGACTTGGAGCGTTTGTTGG GTCGCTGGTTTGGAATGTTGGGCACGGAGCGTGGAGGTCCGCTGGTTTTG GTGTTTTTCGGGGTGACTGGGACTGGGAAGACGATGAGTGCGGGTTTGGT GGCGGAAGCGCTGCTGGAAGGGCGAGAAGCGGCGCATGGTGCGAAACACG GGGCGCCACGGGGCTTTTTGGAGCTGGAAGGCAGCATGTTCGGGAGCGGG GAGGACGTGGGCCGCATGCGACAGGCCGTGGTGCAGCATGGGAGGGAGTG CGGGCGGGGAGGAGTGATTTTGGTGGACGAAGCGCAAAAAGTTCCTCTCC CGACCCTCGACCGAGTGCTCTCCCTCCTCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84236:330..761-

>mRNA_M-pyrifera_M_contig84236.19650.1 ID=mRNA_M-pyrifera_M_contig84236.19650.1|Name=mRNA_M-pyrifera_M_contig84236.19650.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig84236:330..761- (Macrocystis pyrifera P11B4 male)
TGCCCTTTGGCGGACGATGGGTTGTCCCGTTTGGGCACTCTGCTGGACGA
CCGCCTGGCAGCGCAGCCGGAAGCGCGAGGCGACTTGGAGCGTTTGTTGG
GTCGCTGGTTTGGAATGTTGGGCACGGAGCGTGGAGGTCCGCTGGTTTTG
GTGTTTTTCGGGGTGACTGGGACTGGGAAGACGATGAGTGCGGGTTTGGT
GGCGGAAGCGCTGCTGGAAGGGCGAGAAGCGGCGCATGGTGCGAAACACG
GGGCGCCACGGGGCTTTTTGGAGCTGGAAGGCAGCATGTTCGGGAGCGGG
GAGGACGTGGGCCGCATGCGACAGGCCGTGGTGCAGCATGGGAGGGAGTG
CGGGCGGGGAGGAGTGATTTTGGTGGACGAAGCGCAAAAAGTTCCTCTCC
CGACCCTCGACCGAGTGCTCTCCCTCCTCTTTTGCCCTTTGGCGGACGAT
GGGTTGTCCCGTTTGGGCACTCTGCTGGACGACCGCCTGGCAGCGCAGCC
GGAAGCGCGAGGCGACTTGGAGCGTTTGTTGGGTCGCTGGTTTGGAATGT
TGGGCACGGAGCGTGGAGGTCCGCTGGTTTTGGTGTTTTTCGGGGTGACT
GGGACTGGGAAGACGATGAGTGCGGGTTTGGTGGCGGAAGCGCTGCTGGA
AGGGCGAGAAGCGGCGCATGGTGCGAAACACGGGGCGCCACGGGGCTTTT
TGGAGCTGGAAGGCAGCATGTTCGGGAGCGGGGAGGACGTGGGCCGCATG
CGACAGGCCGTGGTGCAGCATGGGAGGGAGTGCGGGCGGGGAGGAGTGAT
TTTGGTGGACGAAGCGCAAAAAGTTCCTCTCCCGACCCTCGACCGAGTGC
TCTCCCTCCTCTTT
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