mRNA_M-pyrifera_M_contig84178.19640.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84178.19640.1
Unique NamemRNA_M-pyrifera_M_contig84178.19640.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84178.19640.1 vs. uniprot
Match: A0A2E3MFJ3_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MFJ3_9GAMM)

HSP 1 Score: 104 bits (260), Expect = 2.080e-25
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 1 
Query:    7 DLNQEIEDMWLKVKEATTNVFERELTVEEFYYLTSCYPYLEICDTDYPFIDDGSKPKIIEMDNGWRIFDFKSVLVSGNSELLQRERTYPKPGR-------SLPPGIFLDDEEDDDEGGRGVGTIVKQYADVAEKMIALAIE 408
            DL+++ +DM   V+EA   +F+R +T +EFY+L S YPYL+IC+ D PFI +G +P++ EM NGW I ++ SV+  G  ELL   R     G+       +L  G      ED++EGG G  TIV+QY D A  MI LAI+
Sbjct:    7 DLDKQRDDMDQAVQEAMETIFDRPITPQEFYFLLSRYPYLQICNADDPFIPEGKEPEVKEMRNGWMIHNYGSVIRGGAYELLALMRQQEIKGKIKQANAKALAEGREKAFGEDEEEGGHG--TIVQQYTDAAFAMIQLAIQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84178.19640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E3MFJ3_9GAMM2.080e-2543.26Uncharacterized protein n=1 Tax=Legionellales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84178contigM-pyrifera_M_contig84178:4..411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.2882903-CDS-M-pyrifera_M_contig84178:3..4111622816749.2882903-CDS-M-pyrifera_M_contig84178:3..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84178 4..411 -
1692278155.4546537-CDS-M-pyrifera_M_contig84178:3..4111692278155.4546537-CDS-M-pyrifera_M_contig84178:3..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84178 4..411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84178.19640.1prot_M-pyrifera_M_contig84178.19640.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84178 4..411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84178.19640.1

>prot_M-pyrifera_M_contig84178.19640.1 ID=prot_M-pyrifera_M_contig84178.19640.1|Name=mRNA_M-pyrifera_M_contig84178.19640.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MADLNQEIEDMWLKVKEATTNVFERELTVEEFYYLTSCYPYLEICDTDYP
FIDDGSKPKIIEMDNGWRIFDFKSVLVSGNSELLQRERTYPKPGRSLPPG
IFLDDEEDDDEGGRGVGTIVKQYADVAEKMIALAIE
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mRNA from alignment at M-pyrifera_M_contig84178:4..411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84178.19640.1 ID=mRNA_M-pyrifera_M_contig84178.19640.1|Name=mRNA_M-pyrifera_M_contig84178.19640.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig84178:4..411- (Macrocystis pyrifera P11B4 male)
ATGGCGGATTTAAATCAAGAAATTGAGGATATGTGGCTGAAAGTCAAAGA
AGCCACGACTAATGTTTTCGAACGTGAACTCACAGTTGAAGAGTTTTACT
ACTTAACGAGTTGCTATCCCTATCTTGAAATTTGCGATACGGACTATCCT
TTTATCGATGATGGCAGCAAGCCAAAAATTATTGAGATGGACAATGGTTG
GCGCATTTTTGACTTCAAAAGCGTTTTAGTCAGCGGCAATAGCGAGCTTT
TGCAACGCGAGCGTACTTATCCAAAACCTGGACGTAGCTTACCTCCCGGC
ATTTTTCTAGATGATGAAGAAGACGATGATGAAGGCGGTCGCGGTGTAGG
CACGATTGTGAAACAGTATGCTGATGTTGCCGAGAAGATGATTGCTTTGG
CAATTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84178:4..411-

>mRNA_M-pyrifera_M_contig84178.19640.1 ID=mRNA_M-pyrifera_M_contig84178.19640.1|Name=mRNA_M-pyrifera_M_contig84178.19640.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig84178:4..411- (Macrocystis pyrifera P11B4 male)
ATGGCGGATTTAAATCAAGAAATTGAGGATATGTGGCTGAAAGTCAAAGA
AGCCACGACTAATGTTTTCGAACGTGAACTCACAGTTGAAGAGTTTTACT
ACTTAACGAGTTGCTATCCCTATCTTGAAATTTGCGATACGGACTATCCT
TTTATCGATGATGGCAGCAAGCCAAAAATTATTGAGATGGACAATGGTTG
GCGCATTTTTGACTTCAAAAGCGTTTTAGTCAGCGGCAATAGCGAGCTTT
TGCAACGCGAGCGTACTTATCCAAAACCTGGACGTAGCTTACCTCCCGGC
ATTTTTCTAGATGATGAAGAAGACGATGATGAAGGCGGTCGCGGTGTAGG
CACGATTGTGAAACAGTATGCTGATGTTGCCGAGAAGATGATTGCTTTGG
CAATTGAGATGGCGGATTTAAATCAAGAAATTGAGGATATGTGGCTGAAA
GTCAAAGAAGCCACGACTAATGTTTTCGAACGTGAACTCACAGTTGAAGA
GTTTTACTACTTAACGAGTTGCTATCCCTATCTTGAAATTTGCGATACGG
ACTATCCTTTTATCGATGATGGCAGCAAGCCAAAAATTATTGAGATGGAC
AATGGTTGGCGCATTTTTGACTTCAAAAGCGTTTTAGTCAGCGGCAATAG
CGAGCTTTTGCAACGCGAGCGTACTTATCCAAAACCTGGACGTAGCTTAC
CTCCCGGCATTTTTCTAGATGATGAAGAAGACGATGATGAAGGCGGTCGC
GGTGTAGGCACGATTGTGAAACAGTATGCTGATGTTGCCGAGAAGATGAT
TGCTTTGGCAATTGAG
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