mRNA_M-pyrifera_M_contig84172.19637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84172.19637.1
Unique NamemRNA_M-pyrifera_M_contig84172.19637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84172.19637.1 vs. uniprot
Match: UPI0003607A3A (FG-GAP-like repeat-containing protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003607A3A)

HSP 1 Score: 83.2 bits (204), Expect = 1.210e-14
Identity = 73/154 (47.40%), Postives = 90/154 (58.44%), Query Frame = 1 
Query:    1 MNGDGFIDIVQANISTDSLHVFLNTGSGTFGTSIGYETADSFGPLAFADVDQDDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAIAVANLNSTVGKIDAIVVNIHDDNVSRYQDGSGVQFFDWDNYTVGEEPTWITTADLDGDGD 462
            MNGDGF+DI+Q+NI +DSLHVFLN G+G+F                          XXXXXXXXXXXXXXXXXXXXXXX           PVA+A AN+N T G++DA+V+ +  + V    D  G  +   +  TVG  PTWIT  D+D DGD
Sbjct:  255 MNGDGFVDIIQSNIDSDSLHVFLNDGTGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGSSWSVGTNPVALATANVNGTTGRVDAMVLALDVNRVDVNYDQFGASYIGTNTTTVGTSPTWITALDVDSDGD 408
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BLAST of mRNA_M-pyrifera_M_contig84172.19637.1 vs. uniprot
Match: A0A818IW80_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A818IW80_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 2.250e-6
Identity = 45/158 (28.48%), Postives = 66/158 (41.77%), Query Frame = 1 
Query:    4 NGDGFIDIVQANISTDSLHVFLNTGSGTFGTSIGYETADSFGP--LAFADVDQD--DDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAIAVANLNSTVGKIDAIVVNIHDDNVSRYQDGSGVQFFDWDNYTVGE--EPTWITTADLDGDG 459
            +GDG IDIV ANI T+++ +FLN G+GTF T + Y+   S  P  +A  D D D  +D+                                  P  +AV + N   GK D +  N   +N++ + +     F     Y  G   +P  +   D DGDG
Sbjct:  402 DGDGKIDIVTANIGTNTIAIFLNNGAGTFATQVPYDAGSSSQPTGVAVGDFDGDGKNDIVTANSGTNTIGIFLNNGAGAFATQVPYDAGSSSQPTGVAVGDFNGD-GKNDIVTANYGTNNIAIFVNNGTGTFATQVPYDAGSSSQPYSVAVGDFDGDG 558
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84172.19637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0003607A3A1.210e-1447.40FG-GAP-like repeat-containing protein n=1 Tax=Baln... [more]
A0A818IW80_9BILA2.250e-628.48Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84172contigM-pyrifera_M_contig84172:191..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.0
Seed ortholog evalue1e-13
Seed eggNOG ortholog1121104.AQXH01000001_gene1671
KEGG koko:K15923
KEGG Pathwayko00511,map00511
Hectar predicted targeting categoryother localisation
EggNOG free text desc.bacterial-type flagellum-dependent cell motility
EggNOG OGsCOG1520@1,COG1520@2,COG1572@1,COG1572@2,COG2706@1,COG2706@2,COG3391@1,COG3391@2,COG5184@1,COG5184@2
EC3.2.1.51
COG Functional cat.NU
CAZyGH95
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size693
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.179839-CDS-M-pyrifera_M_contig84172:190..8831622816749.179839-CDS-M-pyrifera_M_contig84172:190..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84172 191..883 -
1692278155.4038208-CDS-M-pyrifera_M_contig84172:190..8831692278155.4038208-CDS-M-pyrifera_M_contig84172:190..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84172 191..883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84172.19637.1prot_M-pyrifera_M_contig84172.19637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84172 191..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84172.19637.1

>prot_M-pyrifera_M_contig84172.19637.1 ID=prot_M-pyrifera_M_contig84172.19637.1|Name=mRNA_M-pyrifera_M_contig84172.19637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=231bp
MNGDGFIDIVQANISTDSLHVFLNTGSGTFGTSIGYETADSFGPLAFADV
DQDDDMDIIALNANNDEFRVYTNNGVGVLSLGSGHTVGDSPVAIAVANLN
STVGKIDAIVVNIHDDNVSRYQDGSGVQFFDWDNYTVGEEPTWITTADLD
GDGDLDAIVANAVDENLSILTNDGSGAFSETTFSTGSTYGNHVLAADVDG
DGDMDIVTSNQDGTFSVIKNYGGGSVSFITP
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mRNA from alignment at M-pyrifera_M_contig84172:191..883-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84172.19637.1 ID=mRNA_M-pyrifera_M_contig84172.19637.1|Name=mRNA_M-pyrifera_M_contig84172.19637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=693bp|location=Sequence derived from alignment at M-pyrifera_M_contig84172:191..883- (Macrocystis pyrifera P11B4 male)
ATGAATGGAGATGGTTTCATTGATATTGTTCAAGCCAATATATCTACAGA
CAGTTTACATGTGTTTTTAAATACAGGTTCAGGAACCTTCGGTACTTCAA
TAGGTTATGAAACGGCTGATTCGTTCGGTCCGCTGGCTTTTGCTGATGTT
GATCAGGATGATGATATGGATATTATAGCTTTAAATGCTAATAATGATGA
GTTTAGAGTATACACTAATAATGGGGTAGGAGTGCTTTCTCTTGGATCGG
GTCATACAGTCGGGGATTCTCCGGTTGCAATTGCCGTGGCAAATCTAAAT
TCAACTGTTGGCAAAATTGATGCTATCGTAGTTAACATTCATGACGATAA
TGTTAGCAGATATCAGGACGGTTCTGGGGTACAGTTTTTTGACTGGGATA
ATTACACAGTAGGTGAAGAACCAACCTGGATAACAACGGCAGATTTAGAT
GGTGACGGGGATTTAGATGCCATCGTTGCGAATGCAGTTGACGAAAACTT
ATCCATTCTTACCAATGACGGTTCTGGAGCATTTTCAGAAACCACCTTTT
CAACAGGATCGACCTATGGAAATCATGTACTTGCAGCTGATGTGGATGGT
GATGGGGACATGGATATTGTTACTTCAAATCAAGATGGTACTTTTTCAGT
AATCAAGAACTATGGAGGGGGAAGTGTATCATTTATAACTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84172:191..883-

>mRNA_M-pyrifera_M_contig84172.19637.1 ID=mRNA_M-pyrifera_M_contig84172.19637.1|Name=mRNA_M-pyrifera_M_contig84172.19637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1386bp|location=Sequence derived from alignment at M-pyrifera_M_contig84172:191..883- (Macrocystis pyrifera P11B4 male)
ATGAATGGAGATGGTTTCATTGATATTGTTCAAGCCAATATATCTACAGA
CAGTTTACATGTGTTTTTAAATACAGGTTCAGGAACCTTCGGTACTTCAA
TAGGTTATGAAACGGCTGATTCGTTCGGTCCGCTGGCTTTTGCTGATGTT
GATCAGGATGATGATATGGATATTATAGCTTTAAATGCTAATAATGATGA
GTTTAGAGTATACACTAATAATGGGGTAGGAGTGCTTTCTCTTGGATCGG
GTCATACAGTCGGGGATTCTCCGGTTGCAATTGCCGTGGCAAATCTAAAT
TCAACTGTTGGCAAAATTGATGCTATCGTAGTTAACATTCATGACGATAA
TGTTAGCAGATATCAGGACGGTTCTGGGGTACAGTTTTTTGACTGGGATA
ATTACACAGTAGGTGAAGAACCAACCTGGATAACAACGGCAGATTTAGAT
GGTGACGGGGATTTAGATGCCATCGTTGCGAATGCAGTTGACGAAAACTT
ATCCATTCTTACCAATGACGGTTCTGGAGCATTTTCAGAAACCACCTTTT
CAACAGGATCGACCTATGGAAATCATGTACTTGCAGCTGATGTGGATGGT
GATGGGGACATGGATATTGTTACTTCAAATCAAGATGGTACTTTTTCAGT
AATCAAGAACTATGGAGGGGGAAGTGTATCATTTATAACTCCAATGAATG
GAGATGGTTTCATTGATATTGTTCAAGCCAATATATCTACAGACAGTTTA
CATGTGTTTTTAAATACAGGTTCAGGAACCTTCGGTACTTCAATAGGTTA
TGAAACGGCTGATTCGTTCGGTCCGCTGGCTTTTGCTGATGTTGATCAGG
ATGATGATATGGATATTATAGCTTTAAATGCTAATAATGATGAGTTTAGA
GTATACACTAATAATGGGGTAGGAGTGCTTTCTCTTGGATCGGGTCATAC
AGTCGGGGATTCTCCGGTTGCAATTGCCGTGGCAAATCTAAATTCAACTG
TTGGCAAAATTGATGCTATCGTAGTTAACATTCATGACGATAATGTTAGC
AGATATCAGGACGGTTCTGGGGTACAGTTTTTTGACTGGGATAATTACAC
AGTAGGTGAAGAACCAACCTGGATAACAACGGCAGATTTAGATGGTGACG
GGGATTTAGATGCCATCGTTGCGAATGCAGTTGACGAAAACTTATCCATT
CTTACCAATGACGGTTCTGGAGCATTTTCAGAAACCACCTTTTCAACAGG
ATCGACCTATGGAAATCATGTACTTGCAGCTGATGTGGATGGTGATGGGG
ACATGGATATTGTTACTTCAAATCAAGATGGTACTTTTTCAGTAATCAAG
AACTATGGAGGGGGAAGTGTATCATTTATAACTCCA
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