mRNA_M-pyrifera_M_contig8415.19636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8415.19636.1
Unique NamemRNA_M-pyrifera_M_contig8415.19636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: D8LTW4_ECTSI (Fructose-bisphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW4_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 9.400e-34
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLLPLLNPRYLDSKRKR 212
            NPNGKLRLLYEGNP+AMI+EEAGG+ATTGFE I DVRPQSVHHRIPAFFGSP++LLPLL+PRYL SK+KR
Sbjct:  450 NPNGKLRLLYEGNPIAMIVEEAGGIATTGFEAIRDVRPQSVHHRIPAFFGSPDDLLPLLDPRYLHSKKKR 519          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.430e-33
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLLPLLNPRYLDSKRKR 212
            NPNGKLRLLYEGNP+AMI+EEAGGVATTGFE I DVRPQSVHHRIPAFFGSP++LLPLL+PRYL SK+KR
Sbjct: 1696 NPNGKLRLLYEGNPIAMIVEEAGGVATTGFEAIRDVRPQSVHHRIPAFFGSPDDLLPLLDPRYLHSKKKR 1765          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: A0A836CLE5_9STRA (Fructose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.150e-21
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLLPL 176
            NPNGKLRLLYEGNP+ MI+E+AGG A+TGF+RI+DV P + HHRIP FFGSPE++  L
Sbjct:  329 NPNGKLRLLYEGNPIGMIVEQAGGAASTGFQRILDVPPLNTHHRIPTFFGSPEDVYDL 386          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: A0A3B5A1H3_9TELE (Fructose-bisphosphatase n=3 Tax=Pomacentridae TaxID=30863 RepID=A0A3B5A1H3_9TELE)

HSP 1 Score: 87.4 bits (215), Expect = 5.220e-18
Identity = 36/56 (64.29%), Postives = 49/56 (87.50%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLL 170
            NP+GKLRLLYEGNPMA I+E+AGG+A+TG+E I+D++PQS+H R P   GSP+++L
Sbjct:  271 NPDGKLRLLYEGNPMAFIMEQAGGMASTGYENILDIQPQSIHERSPVAMGSPDDVL 326          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: Q00GK7_KARBR (Fructose-bisphosphatase (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GK7_KARBR)

HSP 1 Score: 84.7 bits (208), Expect = 5.740e-18
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENL 167
            NPNGKLRLLYEG PM+ ++E+AGG +TTG +R+MD+ P SVH R+P F GSP+++
Sbjct:  124 NPNGKLRLLYEGGPMSFLLEQAGGKSTTGSQRVMDITPASVHQRVPVFLGSPDDV 178          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: D8LLS2_ECTSI (Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS2_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.440e-18
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLLPLLN 182
            NPNGKLRLLYEG PMA I E+AGG+ATTG +R+MD+ P+ VH R+P + GS E++  L+N
Sbjct:  339 NPNGKLRLLYEGAPMAFICEQAGGMATTGTQRVMDINPEKVHQRVPTYLGSAEDVTELIN 398          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: A0A4Z2ICD5_9TELE (Fructose-bisphosphatase n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2ICD5_9TELE)

HSP 1 Score: 85.9 bits (211), Expect = 7.720e-18
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLLPLLNPRYLDSKRKR*H 218
            +P GKLRLLYEGNPMA IIE+AGGVATTG  R++D++P  +H R+P   GSP+++       YLD  RK  H
Sbjct:  199 SPKGKLRLLYEGNPMAFIIEQAGGVATTGAVRLLDIQPTDIHQRVPVVLGSPDDVQ-----EYLDVCRKHRH 265          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: H2N2S8_ORYLA (Fructose-bisphosphatase n=18 Tax=Percomorphaceae TaxID=1489872 RepID=H2N2S8_ORYLA)

HSP 1 Score: 86.3 bits (212), Expect = 8.070e-18
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLL 170
            NP GKLRLLYEG PMA I+E+AGG+A+TGFE I+D++P+S+H R P   GSPE++L
Sbjct:  224 NPKGKLRLLYEGKPMAFIMEQAGGMASTGFENILDIQPESIHQRAPVAMGSPEDVL 279          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: A0A848XXM5_9BACT (Fructose-bisphosphatase class I n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XXM5_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 9.860e-18
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPE 161
            NPNGKLRL+YE NPMA I+E+AGG+A+TG  RI+DV+P ++H R P + GSPE
Sbjct:    3 NPNGKLRLMYEANPMAFIVEQAGGLASTGHGRILDVKPGALHQRTPIYIGSPE 55          
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Match: UPI0011E9F847 (fructose-1,6-bisphosphatase isozyme 2-like n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011E9F847)

HSP 1 Score: 83.2 bits (204), Expect = 1.160e-17
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 3
Query:    3 NPNGKLRLLYEGNPMAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLL 170
            +P GKLRLLYE NPMA I+E+AGG+A+TGFE I+D++P+S+H R P   GSPE++L
Sbjct:   97 SPRGKLRLLYECNPMAFIMEQAGGMASTGFENILDIQPESIHQRAPVAMGSPEDVL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8415.19636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW4_ECTSI9.400e-3485.71Fructose-bisphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7J4_9PHAE2.430e-3387.14Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLE5_9STRA9.150e-2170.69Fructose-bisphosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A3B5A1H3_9TELE5.220e-1864.29Fructose-bisphosphatase n=3 Tax=Pomacentridae TaxI... [more]
Q00GK7_KARBR5.740e-1861.82Fructose-bisphosphatase (Fragment) n=1 Tax=Karenia... [more]
D8LLS2_ECTSI6.440e-1861.67Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4Z2ICD5_9TELE7.720e-1855.56Fructose-bisphosphatase n=1 Tax=Liparis tanakae Ta... [more]
H2N2S8_ORYLA8.070e-1864.29Fructose-bisphosphatase n=18 Tax=Percomorphaceae T... [more]
A0A848XXM5_9BACT9.860e-1864.15Fructose-bisphosphatase class I n=1 Tax=Rhodotherm... [more]
UPI0011E9F8471.160e-1762.50fructose-1,6-bisphosphatase isozyme 2-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8415contigM-pyrifera_M_contig8415:9958..10331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue9e-20
Seed eggNOG ortholog2880.D8LTW4
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.fructose 1,6-bisphosphate 1-phosphatase activity
EggNOG OGsCOG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size374
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8415.19636.1prot_M-pyrifera_M_contig8415.19636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8415 10002..10172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.1156414-UTR-M-pyrifera_M_contig8415:9957..100011622816749.1156414-UTR-M-pyrifera_M_contig8415:9957..10001Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8415 9958..10001 +
1692278155.361711-UTR-M-pyrifera_M_contig8415:9957..100011692278155.361711-UTR-M-pyrifera_M_contig8415:9957..10001Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8415 9958..10001 +
1622816749.1436057-UTR-M-pyrifera_M_contig8415:10172..103311622816749.1436057-UTR-M-pyrifera_M_contig8415:10172..10331Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8415 10173..10331 +
1692278155.3894064-UTR-M-pyrifera_M_contig8415:10172..103311692278155.3894064-UTR-M-pyrifera_M_contig8415:10172..10331Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8415 10173..10331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.129419-CDS-M-pyrifera_M_contig8415:10001..101721622816749.129419-CDS-M-pyrifera_M_contig8415:10001..10172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8415 10002..10172 +
1692278155.3768175-CDS-M-pyrifera_M_contig8415:10001..101721692278155.3768175-CDS-M-pyrifera_M_contig8415:10001..10172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8415 10002..10172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8415.19636.1

>prot_M-pyrifera_M_contig8415.19636.1 ID=prot_M-pyrifera_M_contig8415.19636.1|Name=mRNA_M-pyrifera_M_contig8415.19636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
MAMIIEEAGGVATTGFERIMDVRPQSVHHRIPAFFGSPENLLPLLNPRYL
DSKRKR*
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mRNA from alignment at M-pyrifera_M_contig8415:9958..10331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8415.19636.1 ID=mRNA_M-pyrifera_M_contig8415.19636.1|Name=mRNA_M-pyrifera_M_contig8415.19636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=374bp|location=Sequence derived from alignment at M-pyrifera_M_contig8415:9958..10331+ (Macrocystis pyrifera P11B4 male)
ACAATCCTAACGGTAAGCTGAGGCTGCTGTACGAGGGGAACCCGATGGCC ATGATTATCGAGGAAGCGGGCGGCGTGGCGACCACGGGTTTCGAACGTAT TATGGATGTGCGGCCGCAATCGGTGCACCACCGCATCCCCGCGTTCTTCG GCAGTCCGGAAAATTTGCTGCCCCTGCTGAACCCTAGGTACCTGGACTCC AAGCGGAAGCGGTAACACTGAAGCGCTCCTTTTCTCTTGTATGTAGTAGC CACGAGCGACACAATTTCGCCACGAACTGAGTCACGTTTTCCTGTTTTAT TTTCGCAGCGACAACGATCGGCTCACCCAAATGGGGTGGGGTGGTGGTCA CGGTAGGGTAGCAAGGTACCAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8415:9958..10331+

>mRNA_M-pyrifera_M_contig8415.19636.1 ID=mRNA_M-pyrifera_M_contig8415.19636.1|Name=mRNA_M-pyrifera_M_contig8415.19636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig8415:9958..10331+ (Macrocystis pyrifera P11B4 male)
ATGGCCATGATTATCGAGGAAGCGGGCGGCGTGGCGACCACGGGTTTCGA
ACGTATTATGGATGTGCGGCCGCAATCGGTGCACCACCGCATCCCCGCGT
TCTTCGGCAGTCCGGAAAATTTGCTGCCCCTGCTGAACCCTAGGTACCTG
GACTCCAAGCGGAAGCGGTAAATGGCCATGATTATCGAGGAAGCGGGCGG
CGTGGCGACCACGGGTTTCGAACGTATTATGGATGTGCGGCCGCAATCGG
TGCACCACCGCATCCCCGCGTTCTTCGGCAGTCCGGAAAATTTGCTGCCC
CTGCTGAACCCTAGGTACCTGGACTCCAAGCGGAAGCGGTAA
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