mRNA_M-pyrifera_M_contig84135.19634.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84135.19634.1
Unique NamemRNA_M-pyrifera_M_contig84135.19634.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: A0A671FU95_RHIFE (Carbohydrate deacetylase n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A671FU95_RHIFE)

HSP 1 Score: 133 bits (334), Expect = 2.560e-37
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFR A+AAG++++  +R E++AQLGRFR+L+G   TH+DGHQ
Sbjct:    4 PRVRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAAAESAAELARRHQIPTGLHANLSEGRPVGSARHGASSLLSPEGFFLGKMGFREAVAAGDVALPQVREELEAQLGRFRELLGRNPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: A0A8C5YKC1_MARMA (Carbohydrate deacetylase n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C5YKC1_MARMA)

HSP 1 Score: 132 bits (333), Expect = 4.330e-37
Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV    +  S +  + G  LGK GFR A+AAG++++  +R E++AQL RFR+L+G   TH+DGHQ
Sbjct:    4 PRVRLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGAAAESAAELARRHSIPTGLHANLSEGRPVGPARQGASSLLSREGFFLGKMGFREAVAAGDVALPQVREELEAQLSRFRELLGRDPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: A0A7J7RRC8_RHIFE (Carbohydrate deacetylase n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A7J7RRC8_RHIFE)

HSP 1 Score: 133 bits (334), Expect = 4.750e-37
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFR A+AAG++++  +R E++AQLGRFR+L+G   TH+DGHQ
Sbjct:    4 PRVRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAAAESAAELARRHQIPTGLHANLSEGRPVGSARHGASSLLSPEGFFLGKMGFREAVAAGDVALPQVREELEAQLGRFRELLGRNPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: A0A338P6I7_MOUSE (Carbohydrate deacetylase n=2 Tax=Murinae TaxID=39107 RepID=A0A338P6I7_MOUSE)

HSP 1 Score: 132 bits (332), Expect = 6.710e-37
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFR ALAAG++++  +R E++AQL RFR+L+G   TH+DGHQ
Sbjct:    4 PRVRLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGTAAESAAELARRHSIPTGLHANLSEGRPVGPARHNASSLLSPEGFFLGKMGFREALAAGDVALPQVREELEAQLSRFRELLGRSPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: UPI00140FFAD3 (carbohydrate deacetylase isoform X6 n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=UPI00140FFAD3)

HSP 1 Score: 133 bits (334), Expect = 1.430e-36
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFR A+AAG++++  +R E++AQLGRFR+L+G   TH+DGHQ
Sbjct:    4 PRVRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAAAESAAELARRHQIPTGLHANLSEGRPVGSARHGASSLLSPEGFFLGKMGFREAVAAGDVALPQVREELEAQLGRFRELLGRNPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: UPI001C2EF05C (carbohydrate deacetylase isoform X3 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=UPI001C2EF05C)

HSP 1 Score: 132 bits (333), Expect = 1.870e-36
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFR ALAAG++++  +R E++AQL RFR+L+G   TH+DGHQ
Sbjct:   61 PRVQLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGTAAESAAELARRHSIPTGLHANLSEGRPVGPARHNASSLLSPEGFFLGKMGFREALAAGDVALPQVREELEAQLSRFRELMGRSPTHVDGHQ 192
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: A0A5F5Q0H6_HORSE (Carbohydrate deacetylase n=4 Tax=Laurasiatheria TaxID=314145 RepID=A0A5F5Q0H6_HORSE)

HSP 1 Score: 130 bits (328), Expect = 2.080e-36
Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFR A+AAG++ M  +R E++AQL RFR+L+G   TH+DGHQ
Sbjct:    4 PRVRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAAAESAAELARRHHIPTGLHANLSEGRPVGPARHGTSSLLSPEGFFLGKMGFREAVAAGDVDMPQVREELEAQLSRFRELLGSDPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: A0A4W2D555_BOBOX (Carbohydrate deacetylase n=5 Tax=Artiodactyla TaxID=91561 RepID=A0A4W2D555_BOBOX)

HSP 1 Score: 130 bits (327), Expect = 2.950e-36
Identity = 66/128 (51.56%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:   16 VVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            +VV ADD GY   RD GI  +FL+G VT  SL+VNG  A  AA  A R  +P GLH NL+EG PV       S +    G  LGK GFRRA+AAGE+ +  +R E++AQL RFR+L+G   TH+DGHQ
Sbjct:    8 LVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGSAAESAAELARRHQIPTGLHANLSEGRPVGPARHGASSLIGSEGFFLGKMGFRRAVAAGEVILPQVREELEAQLSRFRELLGRDPTHVDGHQ 135
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: UPI0018D85D34 (carbohydrate deacetylase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85D34)

HSP 1 Score: 135 bits (339), Expect = 4.120e-36
Identity = 65/132 (49.24%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +++NADD G+   R++GI   + +G+++ A+LM+N R A  A R AE   +PLGLHLNLTEG  V    R  SL+D  +G++ GKFGFR ALA+G I  ++LR E++AQ  RF++L GHP TH+DGHQ
Sbjct:   24 PRIQLIINADDFGHCDGRNHGIVECYRAGLISSATLMINAREATAAIRQAEEYCIPLGLHLNLTEGY-VTKRGRCGSLLDSTSGVLRGKFGFREALASGTIKEEELREEIEAQFRRFQELTGHPPTHVDGHQ 154
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BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Match: UPI000EAAFE14 (carbohydrate deacetylase isoform X2 n=1 Tax=Microtus ochrogaster TaxID=79684 RepID=UPI000EAAFE14)

HSP 1 Score: 133 bits (334), Expect = 7.310e-36
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:    4 PTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAARTAERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAGEISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ 399
            P + +VV ADD GY   RD GI  +FL+G VT  SL+ NG  A  AA  A R  +P GLH NLTEG PV       S +    G  LGK GFR+AL AG++++  +R E++AQL RFR+L+G   TH+DGHQ
Sbjct:    4 PRVQLVVTADDFGYCPRRDKGIVEAFLAGTVTSVSLLANGTAAESAAELARRHSIPTGLHANLTEGRPVGPARHTASSLLSSEGFFLGKMGFRKALEAGDVALPQVREELEAQLNRFRELLGRSPTHVDGHQ 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84135.19634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A671FU95_RHIFE2.560e-3750.00Carbohydrate deacetylase n=3 Tax=Boreoeutheria Tax... [more]
A0A8C5YKC1_MARMA4.330e-3749.24Carbohydrate deacetylase n=3 Tax=Boreoeutheria Tax... [more]
A0A7J7RRC8_RHIFE4.750e-3750.00Carbohydrate deacetylase n=2 Tax=Boreoeutheria Tax... [more]
A0A338P6I7_MOUSE6.710e-3750.00Carbohydrate deacetylase n=2 Tax=Murinae TaxID=391... [more]
UPI00140FFAD31.430e-3650.00carbohydrate deacetylase isoform X6 n=1 Tax=Rhinol... [more]
UPI001C2EF05C1.870e-3650.00carbohydrate deacetylase isoform X3 n=1 Tax=Peromy... [more]
A0A5F5Q0H6_HORSE2.080e-3650.00Carbohydrate deacetylase n=4 Tax=Laurasiatheria Ta... [more]
A0A4W2D555_BOBOX2.950e-3651.56Carbohydrate deacetylase n=5 Tax=Artiodactyla TaxI... [more]
UPI0018D85D344.120e-3649.24carbohydrate deacetylase-like n=1 Tax=Patiria mini... [more]
UPI000EAAFE147.310e-3649.24carbohydrate deacetylase isoform X2 n=1 Tax=Microt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84135contigM-pyrifera_M_contig84135:413..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score141.0
Seed ortholog evalue4.1e-31
Seed eggNOG ortholog34839.XP_005391760.1
Preferred nameYDJC
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0005488,GO:0043167,GO:0043169,GO:0046872
EggNOG free text desc.YdjC-like protein
EggNOG OGs2RYFJ@2759,35MI9@314146,39UAF@33154,3BAZ9@33208,3CRPG@33213,3JDCX@40674,4873S@7711,498A0@7742,4Q0NI@9989,COG3394@1
COG Functional cat.G
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Exons2
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.0328994-CDS-M-pyrifera_M_contig84135:412..4811622816749.0328994-CDS-M-pyrifera_M_contig84135:412..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84135 413..481 +
1692278155.3164532-CDS-M-pyrifera_M_contig84135:412..4811692278155.3164532-CDS-M-pyrifera_M_contig84135:412..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84135 413..481 +
1622816749.0446005-CDS-M-pyrifera_M_contig84135:553..8831622816749.0446005-CDS-M-pyrifera_M_contig84135:553..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84135 554..883 +
1692278155.3279219-CDS-M-pyrifera_M_contig84135:553..8831692278155.3279219-CDS-M-pyrifera_M_contig84135:553..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84135 554..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84135.19634.1prot_M-pyrifera_M_contig84135.19634.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84135 413..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84135.19634.1

>prot_M-pyrifera_M_contig84135.19634.1 ID=prot_M-pyrifera_M_contig84135.19634.1|Name=mRNA_M-pyrifera_M_contig84135.19634.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MPTLSVVVNADDLGYSTPRDNGIFSSFLSGIVTDASLMVNGRTAREAART
AERLGLPLGLHLNLTEGTPVAGTTRVPSLVDRKTGLMLGKFGFRRALAAG
EISMDDLRIEVQAQLGRFRDLVGHPVTHLDGHQ
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mRNA from alignment at M-pyrifera_M_contig84135:413..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84135.19634.1 ID=mRNA_M-pyrifera_M_contig84135.19634.1|Name=mRNA_M-pyrifera_M_contig84135.19634.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig84135:413..883+ (Macrocystis pyrifera P11B4 male)
ATGCCAACTCTGTCGGTTGTAGTGAATGCAGATGACCTTGGATATTCTAC
TCCAAGGGATAATGGAATCGTAAGGGGGGTGAGAAGGGGTGTTTGGGACG
GTATGGGTTGCGTTTACAAGGTTTGAGGTATGGTTGTGCAGTTTTCAAGC
TTTCTATCTGGAATTGTAACGGATGCTTCCTTGATGGTGAATGGTAGAAC
TGCAAGAGAGGCGGCGAGGACGGCAGAACGGCTTGGTCTTCCTCTTGGGC
TCCACTTGAACCTTACTGAGGGCACCCCGGTGGCAGGCACGACACGAGTG
CCATCACTTGTTGATCGTAAAACAGGATTGATGCTAGGAAAGTTTGGATT
TCGACGTGCTCTTGCAGCTGGCGAGATATCGATGGACGATTTACGAATTG
AGGTACAAGCACAGCTTGGCCGTTTTCGTGACCTTGTTGGACACCCTGTG
ACACATTTAGATGGCCATCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84135:413..883+

>mRNA_M-pyrifera_M_contig84135.19634.1 ID=mRNA_M-pyrifera_M_contig84135.19634.1|Name=mRNA_M-pyrifera_M_contig84135.19634.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig84135:413..883+ (Macrocystis pyrifera P11B4 male)
ATGCCAACTCTGTCGGTTGTAGTGAATGCAGATGACCTTGGATATTCTAC
TCCAAGGGATAATGGAATCATGCCAACTCTGTCGGTTGTAGTGAATGCAG
ATGACCTTGGATATTCTACTCCAAGGGATAATGGAATCTTTTCAAGCTTT
CTATCTGGAATTGTAACGGATGCTTCCTTGATGGTGAATGGTAGAACTGC
AAGAGAGGCGGCGAGGACGGCAGAACGGCTTGGTCTTCCTCTTGGGCTCC
ACTTGAACCTTACTGAGGGCACCCCGGTGGCAGGCACGACACGAGTGCCA
TCACTTGTTGATCGTAAAACAGGATTGATGCTAGGAAAGTTTGGATTTCG
ACGTGCTCTTGCAGCTGGCGAGATATCGATGGACGATTTACGAATTGAGG
TACAAGCACAGCTTGGCCGTTTTCGTGACCTTGTTGGACACCCTGTGACA
CATTTAGATGGCCATCAGTTTTCAAGCTTTCTATCTGGAATTGTAACGGA
TGCTTCCTTGATGGTGAATGGTAGAACTGCAAGAGAGGCGGCGAGGACGG
CAGAACGGCTTGGTCTTCCTCTTGGGCTCCACTTGAACCTTACTGAGGGC
ACCCCGGTGGCAGGCACGACACGAGTGCCATCACTTGTTGATCGTAAAAC
AGGATTGATGCTAGGAAAGTTTGGATTTCGACGTGCTCTTGCAGCTGGCG
AGATATCGATGGACGATTTACGAATTGAGGTACAAGCACAGCTTGGCCGT
TTTCGTGACCTTGTTGGACACCCTGTGACACATTTAGATGGCCATCAG
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