mRNA_M-pyrifera_M_contig84133.19633.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84133.19633.1
Unique NamemRNA_M-pyrifera_M_contig84133.19633.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: D8UCG3_VOLCA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UCG3_VOLCA)

HSP 1 Score: 93.6 bits (231), Expect = 2.260e-20
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   19 LTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            L SGL+S  Y+ QG  +L  R R V+ L S RR+PE GW E  +E+L+R+ S MDSNNF   +G GEREGRV+CP+V RR F
Sbjct:    8 LASGLISLSYIRQGEQALARRQRLVKSLLSSRRLPERGWDEATIEMLIRDCSAMDSNNFLDNVGLGEREGRVVCPLVARRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A250XAB8_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAB8_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 3.950e-20
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   16 ELTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            +L  GL+S  Y+ QG  +L  R + V+ L S RR+PEEGW E+ +E+ +++LS MDSNNF G +G GERE RV CP+V RR +
Sbjct:    7 DLACGLISRSYIMQGQQALAKRQKQVKALLSSRRLPEEGWDEQSIEMFIQDLSMMDSNNFVGNVGVGEREARVACPLVARRHY 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A2J7ZIY9_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZIY9_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 4.350e-20
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   19 LTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            L  GLVS  Y+ QG  +L  R R ++ L S R++PE+GW E  VE+L+R+ S MDSNNF   +G GEREGRV CP V RR F
Sbjct:    8 LAVGLVSKSYIRQGEQALARRQRLIKALLSSRKLPEKGWDEATVEMLIRDCSAMDSNNFLDNVGVGEREGRVACPAVARRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A5A8E414_CAFRO (O-phosphoseryl-tRNA(Sec) selenium transferase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E414_CAFRO)

HSP 1 Score: 91.7 bits (226), Expect = 8.240e-20
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   19 LTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            L S LV   YV QG  SL  R R +R+L + R VP  GW E DVE L+ ELS MDSNNF G++G GEREGRV CP+VRRR F
Sbjct:    8 LASRLVDEAYVRQGRQSLAQRSRLLRELLACRTVPARGWDEMDVERLLLELSAMDSNNFIGSLGLGEREGRVACPLVRRRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A8J4AWV6_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AWV6_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   19 LTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            L +GLVS  YV QG  +L  R R ++ L S RR+PE GW E  +E+L+R+ S MDSNNF   IG GEREGRV CP+V RR F
Sbjct:    8 LAAGLVSLSYVRQGEQALARRQRLIKALLSSRRLPERGWDETTIEMLIRDCSAMDSNNFLDNIGVGEREGRVACPLVARRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A813CQR3_9DINO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CQR3_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 1.150e-19
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   19 LTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            L S LV   YV QG  SL  R R +R+L + R VP  GW E DVE L+ ELS MDSNNF G++G GEREGRV CP+VRRR F
Sbjct:    8 LASRLVDEAYVRQGRQSLAQRSRLLRELLACRTVPARGWDEMDVERLLLELSAMDSNNFIGSLGLGEREGRVACPLVRRRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A8J4FJQ7_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FJQ7_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 5.340e-19
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   19 LTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            L +GLVS  Y+ QG  +L  R R ++ L S RR+PE GW E  +E+L+R+ S MDSNNF   +G GEREGRV CP+V RR +
Sbjct:    8 LAAGLVSLSYIRQGEQALARRQRLIKALLSSRRLPERGWDEATIEMLIRDCSAMDSNNFLDNVGVGEREGRVACPLVARRHY 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A836BRS4_9CHLO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BRS4_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 7.200e-19
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   16 ELTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            E   GLVS  Y+ QG  +L  R R V+ L S RR+PE+GW E  +++ +R+ S MDSNNF G +G GEREGR+ CP V RR F
Sbjct:    7 EAARGLVSASYLRQGGEALAARQRRVKALLSSRRLPEQGWDEATLDMFIRDCSAMDSNNFPGNVGVGEREGRLACPAVARRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A662XDE9_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDE9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.270e-18
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   16 ELTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            EL + LV   YV QG+ ++ GR R V  L ++RR+P++GW +  VELL+  LS MDSNNF G+ GAGERE RV   MV RR F
Sbjct:    7 ELAAQLVPATYVQQGLDAVRGRERQVTTLLAQRRLPDDGWDDASVELLLHTLSAMDSNNFRGSAGAGEREARVFSSMVARRHF 89          
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Match: A0A812V663_9DINO (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V663_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 3.530e-18
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   16 ELTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDVELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF 264
            +L  GLV+  YV Q   + + R + V  L ++RR+P+ GW+EED++LL+ E++  D+NNF G +G GEREGRVI  +VRRR F
Sbjct:    7 DLLKGLVNTNYVEQAQQARNSRSKQVTALLTQRRLPDVGWKEEDIQLLLEEMASFDTNNFQGNVGVGEREGRVISDLVRRRHF 89          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84133.19633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8UCG3_VOLCA2.260e-2054.88O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A250XAB8_9CHLO3.950e-2050.60O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A2J7ZIY9_9CHLO4.350e-2053.66O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A5A8E414_CAFRO8.240e-2059.76O-phosphoseryl-tRNA(Sec) selenium transferase n=4 ... [more]
A0A8J4AWV6_9CHLO1.120e-1956.10O-phosphoseryl-tRNA(Sec) selenium transferase n=3 ... [more]
A0A813CQR3_9DINO1.150e-1959.76O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A8J4FJQ7_9CHLO5.340e-1952.44O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A836BRS4_9CHLO7.200e-1951.81O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A662XDE9_9STRA3.270e-1853.01O-phosphoseryl-tRNA(Sec) selenium transferase n=2 ... [more]
A0A812V663_9DINO3.530e-1848.19O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84133contigM-pyrifera_M_contig84133:3..266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.4
Seed ortholog evalue2.9e-17
Seed eggNOG ortholog3067.XP_002956344.1
KEGG rclassRC02965,RC02966
KEGG koko:K03341
KEGG ReactionR08224
KEGG Pathwayko00450,ko00970,map00450,map00970
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis
EggNOG OGs34HCE@3041,37TJ4@33090,COG0076@1,KOG3843@2759
EC2.9.1.2
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.0009928-CDS-M-pyrifera_M_contig84133:2..2661622816749.0009928-CDS-M-pyrifera_M_contig84133:2..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84133 3..266 -
1692278155.2999327-CDS-M-pyrifera_M_contig84133:2..2661692278155.2999327-CDS-M-pyrifera_M_contig84133:2..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84133 3..266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84133.19633.1prot_M-pyrifera_M_contig84133.19633.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84133 3..266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84133.19633.1

>prot_M-pyrifera_M_contig84133.19633.1 ID=prot_M-pyrifera_M_contig84133.19633.1|Name=mRNA_M-pyrifera_M_contig84133.19633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MEHVGELTSGLVSPGYVSQGIGSLHGRIRGVRQLFSERRVPEEGWREEDV
ELLVRELSKMDSNNFAGAIGAGEREGRVICPMVRRRWF
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mRNA from alignment at M-pyrifera_M_contig84133:3..266-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84133.19633.1 ID=mRNA_M-pyrifera_M_contig84133.19633.1|Name=mRNA_M-pyrifera_M_contig84133.19633.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig84133:3..266- (Macrocystis pyrifera P11B4 male)
ATGGAGCACGTTGGAGAGCTGACAAGTGGGTTAGTGTCACCTGGATATGT TTCTCAAGGAATTGGGAGTTTGCATGGACGTATTCGTGGCGTACGACAAT TGTTTTCTGAACGTCGAGTACCAGAGGAAGGATGGCGTGAGGAGGATGTG GAGTTACTGGTTCGAGAGTTGAGCAAAATGGATTCTAACAATTTTGCAGG AGCAATTGGGGCTGGAGAGAGAGAAGGACGTGTGATTTGTCCTATGGTAC GTCGTAGATGGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84133:3..266-

>mRNA_M-pyrifera_M_contig84133.19633.1 ID=mRNA_M-pyrifera_M_contig84133.19633.1|Name=mRNA_M-pyrifera_M_contig84133.19633.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig84133:3..266- (Macrocystis pyrifera P11B4 male)
ATGGAGCACGTTGGAGAGCTGACAAGTGGGTTAGTGTCACCTGGATATGT
TTCTCAAGGAATTGGGAGTTTGCATGGACGTATTCGTGGCGTACGACAAT
TGTTTTCTGAACGTCGAGTACCAGAGGAAGGATGGCGTGAGGAGGATGTG
GAGTTACTGGTTCGAGAGTTGAGCAAAATGGATTCTAACAATTTTGCAGG
AGCAATTGGGGCTGGAGAGAGAGAAGGACGTGTGATTTGTCCTATGGTAC
GTCGTAGATGGTTTATGGAGCACGTTGGAGAGCTGACAAGTGGGTTAGTG
TCACCTGGATATGTTTCTCAAGGAATTGGGAGTTTGCATGGACGTATTCG
TGGCGTACGACAATTGTTTTCTGAACGTCGAGTACCAGAGGAAGGATGGC
GTGAGGAGGATGTGGAGTTACTGGTTCGAGAGTTGAGCAAAATGGATTCT
AACAATTTTGCAGGAGCAATTGGGGCTGGAGAGAGAGAAGGACGTGTGAT
TTGTCCTATGGTACGTCGTAGATGGTTT
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