mRNA_M-pyrifera_M_contig84132.19632.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84132.19632.1
Unique NamemRNA_M-pyrifera_M_contig84132.19632.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: UPI000A2B7CD9 (ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X1 n=1 Tax=Sus scrofa TaxID=9823 RepID=UPI000A2B7CD9)

HSP 1 Score: 134 bits (336), Expect = 7.170e-35
Identity = 90/218 (41.28%), Postives = 120/218 (55.05%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFKG----------DGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M + L   R + P L    HKGQ G + VVGG   ++GAP+FAA+ AL+ G+DL++V C +  AP++K+YSPEL+V P     DS  A  A+GE     LPR+ A+V+GPGLGR H      K  +E S + GV +V+DAD L+L A      EP L       VLTPN VE  R             D    V R  +    V V+ KG++DV+SDG
Sbjct:   50 MENTLQLVRNIIPPLTTKKHKGQDGRIGVVGGCREYTGAPYFAAISALKVGADLSHVFCTQEAAPVIKSYSPELIVHPVL---DSPDAARAVGE----WLPRLHALVVGPGLGRDHVLLENVKGILEASKARGVPVVIDADGLWLIAQ-----EPALVQGYQKAVLTPNHVEFSRLSEAVLGDPLDGRDRRGAVLRLSQALGNVTVVQKGEQDVISDG 255          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: A0A8C0XS94_CASCN (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0XS94_CASCN)

HSP 1 Score: 132 bits (333), Expect = 1.250e-34
Identity = 85/218 (38.99%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRF----------KGDGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M +F    + + PAL    HKGQ G + +VGG + ++GAP+FAAM AL++G+DL+YV C R  AP++K+YSPEL+V P     DS  A +    ++K  LPR+ A+V+GPGLGR        K  +E S +  + +V+DAD L+L A      EP L       +LTPN +E  R             D  A V R  +    V V+ KG+ D++SDG
Sbjct:   30 MENFFQLVKNIVPALTEKKHKGQDGRIGIVGGCQEYTGAPYFAAMSALKAGADLSYVFCAREAAPVIKSYSPELIVHPVL---DSPNAVQ----EVKKWLPRLHALVVGPGLGRDDLLLKNVKGILEASKARDIPIVIDADGLWLIAQ-----EPALIQGYQKAILTPNHMEFSRLWEAVVSSPVDSSDDHASVLRLSQALGNVTVVQKGEHDLISDG 235          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: NNRD_BOVIN (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=13 Tax=Pecora TaxID=35500 RepID=NNRD_BOVIN)

HSP 1 Score: 134 bits (336), Expect = 1.630e-34
Identity = 91/218 (41.74%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFK----------GDGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M S L   R V PAL    HKGQ G + VVGG   ++GAP+FAA+ AL+ G+DL++V C +  AP++KAYSPEL+V P     DS  A   + +     LPR+ A+V+GPGLGR  A     K  +E S + G+ +V+DAD L+L A      +P L       VLTPN VE GR            GD    V R  +    V V+ KG++DV+SDG
Sbjct:   32 MESILQLVRSVVPALTTKKHKGQDGRIGVVGGCREYTGAPYFAAISALKVGADLSHVFCTQEAAPVIKAYSPELIVHPVL---DSPEAVRDVEQ----WLPRLHALVVGPGLGRDDALLENVKGILEASKARGIPVVIDADGLWLIAQ-----QPALIQGYRKAVLTPNHVEFGRLSEAVLGVPLDGGDRHGAVLRLSQALGNVTVVQKGEQDVISDG 237          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: A0A2V3IQS3_9FLOR (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQS3_9FLOR)

HSP 1 Score: 133 bits (334), Expect = 1.780e-34
Identity = 83/201 (41.29%), Postives = 123/201 (61.19%), Query Frame = 1
Query:   22 FRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADAL-FLWASNSWSFEPPLGSTASPIVLTPNVVELGRF----KGDGPAEVAR--NEKVVVLSKGKEDVV 603
            FR   P+LDG  +KGQ G + V+GGSE ++GAPFF+AM A+R G+DL++V C R+ A I+K+YSP+L+V+P +         +ALG +   L  R+ A+V+GPGLGR+  AA V +  +  +I +G  LV+DADAL FL  S +   E    +    + LTPN VEL R       D   ++ +    K V+++KG +DV+
Sbjct:   12 FRSQVPSLDGTHYKGQAGRIAVIGGSEEYTGAPFFSAMSAMRGGADLSFVFCPRNAAQIIKSYSPDLIVYPGF---------DALGNECTALA-RMHAIVVGPGLGRTDHAAEVFEKVLSYAIRSGTVLVIDADALWFLSQSPNLFAEIANSAEGFHVYLTPNKVELDRLLIAAAVDSTVQLVKLLKGKAVIIAKGNKDVI 202          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: A0A8D1L409_PIG (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=4 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1L409_PIG)

HSP 1 Score: 134 bits (336), Expect = 1.960e-34
Identity = 90/218 (41.28%), Postives = 120/218 (55.05%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFKG----------DGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M + L   R + P L    HKGQ G + VVGG   ++GAP+FAA+ AL+ G+DL++V C +  AP++K+YSPEL+V P     DS  A  A+GE     LPR+ A+V+GPGLGR H      K  +E S + GV +V+DAD L+L A      EP L       VLTPN VE  R             D    V R  +    V V+ KG++DV+SDG
Sbjct:   32 MENTLQLVRNIIPPLTTKKHKGQDGRIGVVGGCREYTGAPYFAAISALKVGADLSHVFCTQEAAPVIKSYSPELIVHPVL---DSPDAARAVGE----WLPRLHALVVGPGLGRDHVLLENVKGILEASKARGVPVVIDADGLWLIAQ-----EPALVQGYQKAVLTPNHVEFSRLSEAVLGDPLDGRDRRGAVLRLSQALGNVTVVQKGEQDVISDG 237          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: I3LS60_PIG (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=16 Tax=Suidae TaxID=9821 RepID=I3LS60_PIG)

HSP 1 Score: 134 bits (336), Expect = 2.350e-34
Identity = 90/218 (41.28%), Postives = 120/218 (55.05%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFKG----------DGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M + L   R + P L    HKGQ G + VVGG   ++GAP+FAA+ AL+ G+DL++V C +  AP++K+YSPEL+V P     DS  A  A+GE     LPR+ A+V+GPGLGR H      K  +E S + GV +V+DAD L+L A      EP L       VLTPN VE  R             D    V R  +    V V+ KG++DV+SDG
Sbjct:   50 MENTLQLVRNIIPPLTTKKHKGQDGRIGVVGGCREYTGAPYFAAISALKVGADLSHVFCTQEAAPVIKSYSPELIVHPVL---DSPDAARAVGE----WLPRLHALVVGPGLGRDHVLLENVKGILEASKARGVPVVIDADGLWLIAQ-----EPALVQGYQKAVLTPNHVEFSRLSEAVLGDPLDGRDRRGAVLRLSQALGNVTVVQKGEQDVISDG 255          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: A0A5G2QRH4_PIG (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=4 Tax=Sus scrofa TaxID=9823 RepID=A0A5G2QRH4_PIG)

HSP 1 Score: 134 bits (336), Expect = 4.410e-34
Identity = 90/218 (41.28%), Postives = 120/218 (55.05%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFKG----------DGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M + L   R + P L    HKGQ G + VVGG   ++GAP+FAA+ AL+ G+DL++V C +  AP++K+YSPEL+V P     DS  A  A+GE     LPR+ A+V+GPGLGR H      K  +E S + GV +V+DAD L+L A      EP L       VLTPN VE  R             D    V R  +    V V+ KG++DV+SDG
Sbjct:   32 MENTLQLVRNIIPPLTTKKHKGQDGRIGVVGGCREYTGAPYFAAISALKVGADLSHVFCTQEAAPVIKSYSPELIVHPVL---DSPDAARAVGE----WLPRLHALVVGPGLGRDHVLLENVKGILEASKARGVPVVIDADGLWLIAQ-----EPALVQGYQKAVLTPNHVEFSRLSEAVLGDPLDGRDRRGAVLRLSQALGNVTVVQKGEQDVISDG 237          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: S4RU15_PETMA (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RU15_PETMA)

HSP 1 Score: 132 bits (331), Expect = 5.190e-34
Identity = 82/217 (37.79%), Postives = 123/217 (56.68%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFKGDGPAEVARNEK-------------VVVLSKGKEDVVSDG 612
            M+S L + RG+ P L    HKGQ G V +VGGS  ++GAP+FAA+ AL+ G+DL++V C +  A ++K+YSPEL+V P           E +G+++   LPR++++V+GPGLGR        K  +E++ S G+ +V+DAD L+L   N     P L      I+LTPN +E  R +     +   NE              V ++ KG+ED+VSDG
Sbjct:    8 MASPLEQVRGIIPPLSPSKHKGQAGRVGIVGGSRDYAGAPYFAAISALKVGADLSHVFCTKDTAVVIKSYSPELIVHPI-------LDHENIGQEMDTWLPRLNSLVVGPGLGRDPEILENVKIIIEKAKSKGIPIVIDADGLWLVTQN-----PALIHGHRFIILTPNAIEFNRLQQTTVRDHDDNENGYTHYELCLALGNVTIVQKGQEDLVSDG 212          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: A0A250XYT0_CASCN (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=6 Tax=Castor canadensis TaxID=51338 RepID=A0A250XYT0_CASCN)

HSP 1 Score: 132 bits (333), Expect = 5.420e-34
Identity = 85/218 (38.99%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRF----------KGDGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M +F    + + PAL    HKGQ G + +VGG + ++GAP+FAAM AL++G+DL+YV C R  AP++K+YSPEL+V P     DS  A +    ++K  LPR+ A+V+GPGLGR        K  +E S +  + +V+DAD L+L A      EP L       +LTPN +E  R             D  A V R  +    V V+ KG+ D++SDG
Sbjct:   41 MENFFQLVKNIVPALTEKKHKGQDGRIGIVGGCQEYTGAPYFAAMSALKAGADLSYVFCAREAAPVIKSYSPELIVHPVL---DSPNAVQ----EVKKWLPRLHALVVGPGLGRDDLLLKNVKGILEASKARDIPIVIDADGLWLIAQ-----EPALIQGYQKAILTPNHMEFSRLWEAVVSSPVDSSDDHASVLRLSQALGNVTVVQKGEHDLISDG 246          
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Match: A0A6J0Z4K8_ODOVR (ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=6 Tax=Cervidae TaxID=9850 RepID=A0A6J0Z4K8_ODOVR)

HSP 1 Score: 131 bits (329), Expect = 5.930e-34
Identity = 88/218 (40.37%), Postives = 119/218 (54.59%), Query Frame = 1
Query:    1 MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRSGSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLLPRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNSWSFEPPLGSTASPIVLTPNVVELGRFK----------GDGPAEVARNEK----VVVLSKGKEDVVSDG 612
            M + L   R V P+L    HKGQ G + VVGG   ++GAP+FAA+ AL+ G+DL++V C +  AP++K+YSPEL+V P     D+    E         LPR+ A+V+GPGLGR  A     K  +E S + GV +V+DAD L+L A      +P L       VLTPN VE GR            GD    V R  +    V V+ KG++DV+SDG
Sbjct:   32 MENTLQLVRNVVPSLTTKKHKGQDGRIGVVGGCREYTGAPYFAAISALKVGADLSHVFCTQEAAPVIKSYSPELIVHPVLDSPDAVRDVEQW-------LPRLHALVVGPGLGRDDALLENVKGILEASKARGVPVVIDADGLWLIAQ-----QPALIQGYRKAVLTPNHVEFGRLSEAVLGAPLDGGDRHGAVLRLSQALGNVTVVQKGEQDVISDG 237          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84132.19632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2B7CD97.170e-3541.28ATP-dependent (S)-NAD(P)H-hydrate dehydratase isof... [more]
A0A8C0XS94_CASCN1.250e-3438.99ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 ... [more]
NNRD_BOVIN1.630e-3441.74ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=13... [more]
A0A2V3IQS3_9FLOR1.780e-3441.29ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 ... [more]
A0A8D1L409_PIG1.960e-3441.28ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=4 ... [more]
I3LS60_PIG2.350e-3441.28ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=16... [more]
A0A5G2QRH4_PIG4.410e-3441.28ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=4 ... [more]
S4RU15_PETMA5.190e-3437.79ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=2 ... [more]
A0A250XYT0_CASCN5.420e-3438.99ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=6 ... [more]
A0A6J0Z4K8_ODOVR5.930e-3440.37ATP-dependent (S)-NAD(P)H-hydrate dehydratase n=6 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84132contigM-pyrifera_M_contig84132:1..612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score138.7
Seed ortholog evalue3.1e-30
Seed eggNOG ortholog72004.XP_005904710.1
Preferred nameCARKD
KEGG koko:K17757
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0012505,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0031974,GO:0034356,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046496,GO:0047453,GO:0051186,GO:0051188,GO:0055086,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
EggNOG OGs38FU3@33154,3BEXY@33208,3CRJF@33213,3JF63@40674,480FF@7711,48ZX4@7742,4J35I@91561,COG0063@1,KOG3974@2759
EC4.2.1.93
COG Functional cat.G
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size612
Cds size612
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.9621935-CDS-M-pyrifera_M_contig84132:0..6121622816748.9621935-CDS-M-pyrifera_M_contig84132:0..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84132 1..612 -
1692278155.2870872-CDS-M-pyrifera_M_contig84132:0..6121692278155.2870872-CDS-M-pyrifera_M_contig84132:0..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84132 1..612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84132.19632.1prot_M-pyrifera_M_contig84132.19632.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84132 1..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84132.19632.1

>prot_M-pyrifera_M_contig84132.19632.1 ID=prot_M-pyrifera_M_contig84132.19632.1|Name=mRNA_M-pyrifera_M_contig84132.19632.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
MSSFLSRFRGVAPALDGLSHKGQHGAVCVVGGSEAFSGAPFFAAMGALRS
GSDLAYVLCERSCAPILKAYSPELMVFPTWAENDSETAQEALGEKLKLLL
PRVDAVVLGPGLGRSHAAACVAKTTMEQSISAGVALVVDADALFLWASNS
WSFEPPLGSTASPIVLTPNVVELGRFKGDGPAEVARNEKVVVLSKGKEDV
VSDG
back to top

mRNA from alignment at M-pyrifera_M_contig84132:1..612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84132.19632.1 ID=mRNA_M-pyrifera_M_contig84132.19632.1|Name=mRNA_M-pyrifera_M_contig84132.19632.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig84132:1..612- (Macrocystis pyrifera P11B4 male)
ATGTCTTCTTTCCTGTCCCGTTTCCGTGGCGTGGCGCCTGCGCTGGACGG GCTGTCGCACAAGGGGCAGCACGGGGCGGTGTGTGTGGTGGGAGGTAGCG AGGCCTTTAGTGGAGCTCCCTTTTTCGCCGCTATGGGGGCACTTCGCAGC GGGTCAGACCTCGCTTACGTGCTTTGTGAGCGTAGTTGTGCGCCCATCCT CAAGGCATACTCCCCGGAGCTGATGGTGTTCCCCACCTGGGCCGAGAATG ACTCGGAAACGGCACAGGAAGCGCTGGGGGAAAAGCTGAAACTTCTCCTG CCCCGTGTGGACGCTGTGGTGCTTGGACCCGGTCTGGGACGCTCCCACGC CGCAGCTTGCGTCGCGAAGACCACGATGGAGCAGTCCATTTCCGCCGGAG TGGCCCTGGTTGTGGATGCAGACGCGTTGTTTCTTTGGGCTTCCAATTCC TGGAGTTTCGAGCCTCCCCTGGGATCCACAGCCTCCCCCATCGTCCTCAC CCCCAACGTCGTTGAGTTGGGCAGGTTCAAAGGCGACGGCCCTGCAGAGG TCGCAAGAAACGAAAAGGTGGTGGTGTTGAGCAAAGGGAAGGAGGATGTC GTGAGTGACGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84132:1..612-

>mRNA_M-pyrifera_M_contig84132.19632.1 ID=mRNA_M-pyrifera_M_contig84132.19632.1|Name=mRNA_M-pyrifera_M_contig84132.19632.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig84132:1..612- (Macrocystis pyrifera P11B4 male)
ATGTCTTCTTTCCTGTCCCGTTTCCGTGGCGTGGCGCCTGCGCTGGACGG
GCTGTCGCACAAGGGGCAGCACGGGGCGGTGTGTGTGGTGGGAGGTAGCG
AGGCCTTTAGTGGAGCTCCCTTTTTCGCCGCTATGGGGGCACTTCGCAGC
GGGTCAGACCTCGCTTACGTGCTTTGTGAGCGTAGTTGTGCGCCCATCCT
CAAGGCATACTCCCCGGAGCTGATGGTGTTCCCCACCTGGGCCGAGAATG
ACTCGGAAACGGCACAGGAAGCGCTGGGGGAAAAGCTGAAACTTCTCCTG
CCCCGTGTGGACGCTGTGGTGCTTGGACCCGGTCTGGGACGCTCCCACGC
CGCAGCTTGCGTCGCGAAGACCACGATGGAGCAGTCCATTTCCGCCGGAG
TGGCCCTGGTTGTGGATGCAGACGCGTTGTTTCTTTGGGCTTCCAATTCC
TGGAGTTTCGAGCCTCCCCTGGGATCCACAGCCTCCCCCATCGTCCTCAC
CCCCAACGTCGTTGAGTTGGGCAGGTTCAAAGGCGACGGCCCTGCAGAGG
TCGCAAGAAACGAAAAGGTGGTGGTGTTGAGCAAAGGGAAGGAGGATGTC
GTGAGTGACGGGATGTCTTCTTTCCTGTCCCGTTTCCGTGGCGTGGCGCC
TGCGCTGGACGGGCTGTCGCACAAGGGGCAGCACGGGGCGGTGTGTGTGG
TGGGAGGTAGCGAGGCCTTTAGTGGAGCTCCCTTTTTCGCCGCTATGGGG
GCACTTCGCAGCGGGTCAGACCTCGCTTACGTGCTTTGTGAGCGTAGTTG
TGCGCCCATCCTCAAGGCATACTCCCCGGAGCTGATGGTGTTCCCCACCT
GGGCCGAGAATGACTCGGAAACGGCACAGGAAGCGCTGGGGGAAAAGCTG
AAACTTCTCCTGCCCCGTGTGGACGCTGTGGTGCTTGGACCCGGTCTGGG
ACGCTCCCACGCCGCAGCTTGCGTCGCGAAGACCACGATGGAGCAGTCCA
TTTCCGCCGGAGTGGCCCTGGTTGTGGATGCAGACGCGTTGTTTCTTTGG
GCTTCCAATTCCTGGAGTTTCGAGCCTCCCCTGGGATCCACAGCCTCCCC
CATCGTCCTCACCCCCAACGTCGTTGAGTTGGGCAGGTTCAAAGGCGACG
GCCCTGCAGAGGTCGCAAGAAACGAAAAGGTGGTGGTGTTGAGCAAAGGG
AAGGAGGATGTCGTGAGTGACGGG
back to top