mRNA_M-pyrifera_M_contig8413.19631.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8413.19631.1
Unique NamemRNA_M-pyrifera_M_contig8413.19631.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8413.19631.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 6.000e-114
Identity = 229/441 (51.93%), Postives = 260/441 (58.96%), Query Frame = 1 
Query:    4 RVRWRWPCFSLALLLAYTVGS-LLFLSPPPRPVGAVTGAAGT-----STTWGARIRSAAGVDSIVFIALGPAARSTSLLYALSSLREEGRWDGPVHVIVEREGDLDCLSSHMRGGVTTIAVVPPD-----GGXXXXWDGDGDSDGVAINAKLIKMQLFDLLPASVQRVVYVDCDVITQQPLGPYLAAVAREWGDVDEKAAAIMKAAVTVEEAATAREVNKGLAVLPAESSSSLRKREGGAIEGPRLPPTSSPPSAAGEAPGSPATAGTKXXXXXXXXXXXXXGMTSTLIIFPDAGGHKFPVCAGCDMAHSGVVALARGHSERCLQLWHDAFVGKNGDGXXXXXXXXXXXXXXXXXXXTDQEALDIALRKGSGCEARWVDRGHLHFMKDLFVMAGLTRTSTFAHFTGLLHPERLSFFYLRHYEWSLGRSVDEWGQGEVRACA 1293
            R R R    +LALLL Y V S +LFL PP  PVG  T  + T      T    R+RSA+G DSIVF+ALGPAARS SLLYAL+SLREEG WDG VHV+VERE DL CLSS++R  VT IA+ P       GG      G GD+ GV  NAK+ KM+L DLLP SV+RVVYVDCDV+TQ+PLGP+L AVAREW ++D KA                                                                      XXXXXXXXXXXXX    T++IF DAGGH  PVC GCD AHSGVVALARGHSERCL+LWHDAF    GDG                   TDQEALD AL +GSGCEA  + R HL FMKD FVMAGLTRTSTF H+TGLLHP+ L   Y R YEW+LG S +EWGQGE++ CA
Sbjct:    3 RARRRCWSVALALLLTYAVVSTVLFLRPPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXXXXXXXGGSLH--SGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAF---EGDGAGNGGTS------------TDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCA 406
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BLAST of mRNA_M-pyrifera_M_contig8413.19631.1 vs. uniprot
Match: F2U8W7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8W7_SALR5)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-8
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 1 
Query:   94 PVGAVTGAAGTSTTWGARIRSAAGVDSIVFIALGPAARSTSLLYALSSLREEGRWDGPVHVIVEREGDLDCLSSHMRGGVTTIAVVPPDGGXXXXWDGDGDSDGVAINAKLIKMQLFDLLPASVQRVVYVDCDVITQQPLGPY 522
            P+G    AA  S T      S+  VD+ VFI +G    +T L  A+SSLR  G W+G V+VI +R+     L       V  I V             D  +  +AI++   K Q+FD+LPA V  V+Y+D D++  +PL P+
Sbjct:   55 PIGLSLTAADFSVT------SSEAVDAFVFICMGTWTNTTILHNAVSSLRTTGGWEGEVYVITDRQDGWPSLRDKYS--VNVIGV-------------DAVASKLAIHS--FKCQMFDVLPAHVHNVLYMDADIVVSRPLMPF 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8413.19631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSZ4_ECTSI6.000e-11451.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F2U8W7_SALR51.260e-834.27Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8413contigM-pyrifera_M_contig8413:10018..11484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.1
Seed ortholog evalue1.5e-93
Seed eggNOG ortholog2880.D8LSZ4
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EYNU@1,2T04Z@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-26_001980.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1305
Cds size1305
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.918315-CDS-M-pyrifera_M_contig8413:10017..104201622816748.918315-CDS-M-pyrifera_M_contig8413:10017..10420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8413 10018..10420 +
1692278155.263875-CDS-M-pyrifera_M_contig8413:10017..104201692278155.263875-CDS-M-pyrifera_M_contig8413:10017..10420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8413 10018..10420 +
1622816748.9318378-CDS-M-pyrifera_M_contig8413:10582..114841622816748.9318378-CDS-M-pyrifera_M_contig8413:10582..11484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8413 10583..11484 +
1692278155.2772706-CDS-M-pyrifera_M_contig8413:10582..114841692278155.2772706-CDS-M-pyrifera_M_contig8413:10582..11484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8413 10583..11484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8413.19631.1prot_M-pyrifera_M_contig8413.19631.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8413 10018..11484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8413.19631.1

>prot_M-pyrifera_M_contig8413.19631.1 ID=prot_M-pyrifera_M_contig8413.19631.1|Name=mRNA_M-pyrifera_M_contig8413.19631.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=435bp
MRVRWRWPCFSLALLLAYTVGSLLFLSPPPRPVGAVTGAAGTSTTWGARI
RSAAGVDSIVFIALGPAARSTSLLYALSSLREEGRWDGPVHVIVEREGDL
DCLSSHMRGGVTTIAVVPPDGGGGGGWDGDGDSDGVAINAKLIKMQLFDL
LPASVQRVVYVDCDVITQQPLGPYLAAVAREWGDVDEKAAAIMKAAVTVE
EAATAREVNKGLAVLPAESSSSLRKREGGAIEGPRLPPTSSPPSAAGEAP
GSPATAGTKGGTAAAAAAAAAAGMTSTLIIFPDAGGHKFPVCAGCDMAHS
GVVALARGHSERCLQLWHDAFVGKNGDGGGSGVGVRGGGGGDGTGTATDQ
EALDIALRKGSGCEARWVDRGHLHFMKDLFVMAGLTRTSTFAHFTGLLHP
ERLSFFYLRHYEWSLGRSVDEWGQGEVRACAAGW*
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mRNA from alignment at M-pyrifera_M_contig8413:10018..11484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8413.19631.1 ID=mRNA_M-pyrifera_M_contig8413.19631.1|Name=mRNA_M-pyrifera_M_contig8413.19631.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at M-pyrifera_M_contig8413:10018..11484+ (Macrocystis pyrifera P11B4 male)
ATGCGGGTGAGATGGAGGTGGCCGTGCTTTTCGCTAGCCCTCCTCCTGGC
CTACACGGTGGGCAGCCTCCTTTTCCTATCCCCTCCCCCAAGACCTGTCG
GCGCCGTCACCGGAGCTGCGGGTACCAGCACCACCTGGGGGGCCCGGATT
CGATCAGCGGCGGGGGTGGACTCGATCGTCTTTATTGCCCTCGGGCCGGC
AGCGCGCTCGACCTCGCTGCTGTACGCGCTGTCGTCGCTCAGGGAGGAGG
GCCGCTGGGACGGGCCGGTGCACGTGATCGTCGAGCGCGAGGGGGACCTA
GACTGTCTTTCGTCGCACATGCGGGGCGGCGTTACGACTATCGCTGTTGT
TCCGCCTGACGGTGGTGGTGGTGGTGGTTGGGATGGTGATGGTGACAGCG
ATGGTGATGAAACGAAGGTGGGCACAAGCTATAGAAAAGGAGAGCTTGCG
CGAAAGGAGGGGAAGGGTGGTGTGCGTGGTGGTGGCGGCGGCGGTGGTGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGACGGCGCTGGCAGGAAGA
GCGCGGAGAATGGAGGGGTGGCAATAAACGCGAAGCTCATCAAGATGCAG
CTCTTCGACCTGCTTCCGGCCAGCGTCCAGCGTGTGGTCTACGTCGACTG
CGACGTCATCACGCAGCAACCGCTGGGTCCCTACCTCGCCGCGGTCGCCC
GCGAGTGGGGCGACGTCGACGAGAAGGCAGCGGCGATTATGAAGGCGGCG
GTGACGGTGGAAGAGGCGGCGACCGCGCGCGAGGTAAATAAGGGACTCGC
CGTGTTGCCAGCGGAGTCTTCGTCGTCCCTCCGCAAGCGAGAAGGGGGCG
CAATCGAGGGACCTCGACTGCCCCCGACATCGTCCCCGCCATCAGCAGCA
GGAGAGGCACCAGGATCACCAGCAACAGCAGGCACCAAGGGCGGCACTGC
TGCCGCTGCCGCTGCTGCCGCCGCTGCCGGCATGACGTCAACCTTGATAA
TATTTCCGGATGCAGGCGGGCACAAGTTTCCGGTGTGCGCGGGCTGCGAT
ATGGCGCACTCCGGCGTGGTGGCGCTCGCTCGGGGCCACTCGGAGCGGTG
CCTCCAGCTCTGGCACGACGCCTTTGTAGGCAAAAATGGAGATGGAGGCG
GGAGCGGGGTCGGGGTTAGGGGCGGGGGCGGGGGCGACGGCACAGGGACG
GCGACCGACCAAGAGGCCCTGGACATCGCTTTGCGGAAGGGCTCGGGGTG
TGAGGCCCGCTGGGTGGACAGGGGCCACCTGCACTTCATGAAGGATCTGT
TCGTGATGGCGGGGCTGACGCGAACGAGCACTTTCGCGCATTTCACTGGC
CTGCTGCACCCCGAAAGGCTCTCGTTTTTTTACCTTCGGCACTACGAGTG
GTCGCTGGGCAGGAGCGTCGATGAGTGGGGGCAGGGAGAGGTTAGGGCTT
GCGCCGCCGGATGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8413:10018..11484+

>mRNA_M-pyrifera_M_contig8413.19631.1 ID=mRNA_M-pyrifera_M_contig8413.19631.1|Name=mRNA_M-pyrifera_M_contig8413.19631.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2610bp|location=Sequence derived from alignment at M-pyrifera_M_contig8413:10018..11484+ (Macrocystis pyrifera P11B4 male)
ATGCGGGTGAGATGGAGGTGGCCGTGCTTTTCGCTAGCCCTCCTCCTGGC
CTACACGGTGGGCAGCCTCCTTTTCCTATCCCCTCCCCCAAGACCTGTCG
GCGCCGTCACCGGAGCTGCGGGTACCAGCACCACCTGGGGGGCCCGGATT
CGATCAGCGGCGGGGGTGGACTCGATCGTCTTTATTGCCCTCGGGCCGGC
AGCGCGCTCGACCTCGCTGCTGTACGCGCTGTCGTCGCTCAGGGAGGAGG
GCCGCTGGGACGGGCCGGTGCACGTGATCGTCGAGCGCGAGGGGGACCTA
GACTGTCTTTCGTCGCACATGCGGGGCGGCGTTACGACTATCGCTGTTGT
TCCGCCTGACGGTGGTGGTGGTGGTGGTTGGGATGGTGATGGTGACAGCG
ATGATGCGGGTGAGATGGAGGTGGCCGTGCTTTTCGCTAGCCCTCCTCCT
GGCCTACACGGTGGGCAGCCTCCTTTTCCTATCCCCTCCCCCAAGACCTG
TCGGCGCCGTCACCGGAGCTGCGGGTACCAGCACCACCTGGGGGGCCCGG
ATTCGATCAGCGGCGGGGGTGGACTCGATCGTCTTTATTGCCCTCGGGCC
GGCAGCGCGCTCGACCTCGCTGCTGTACGCGCTGTCGTCGCTCAGGGAGG
AGGGCCGCTGGGACGGGCCGGTGCACGTGATCGTCGAGCGCGAGGGGGAC
CTAGACTGTCTTTCGTCGCACATGCGGGGCGGCGTTACGACTATCGCTGT
TGTTCCGCCTGACGGTGGTGGTGGTGGTGGTTGGGATGGTGATGGTGACA
GCGATGGGGTGGCAATAAACGCGAAGCTCATCAAGATGCAGCTCTTCGAC
CTGCTTCCGGCCAGCGTCCAGCGTGTGGTCTACGTCGACTGCGACGTCAT
CACGCAGCAACCGCTGGGTCCCTACCTCGCCGCGGTCGCCCGCGAGTGGG
GCGACGTCGACGAGAAGGCAGCGGCGATTATGAAGGCGGCGGTGACGGTG
GAAGAGGCGGCGACCGCGCGCGAGGTAAATAAGGGACTCGCCGTGTTGCC
AGCGGAGTCTTCGTCGTCCCTCCGCAAGCGAGAAGGGGGCGCAATCGAGG
GACCTCGACTGCCCCCGACATCGTCCCCGCCATCAGCAGCAGGAGAGGCA
CCAGGATCACCAGCAACAGCAGGCACCAAGGGCGGCACTGCTGCCGCTGC
CGCTGCTGCCGCCGCTGCCGGCATGACGTCAACCTTGATAATATTTCCGG
ATGCAGGCGGGCACAAGTTTCCGGTGTGCGCGGGCTGCGATATGGCGCAC
TCCGGCGTGGTGGCGCTCGCTCGGGGCCACTCGGAGCGGTGCCTCCAGCT
CTGGCACGACGCCTTTGTAGGCAAAAATGGAGATGGAGGCGGGAGCGGGG
TCGGGGTTAGGGGCGGGGGCGGGGGCGACGGCACAGGGACGGCGACCGAC
CAAGAGGCCCTGGACATCGCTTTGCGGAAGGGCTCGGGGTGTGAGGCCCG
CTGGGTGGACAGGGGCCACCTGCACTTCATGAAGGATCTGTTCGTGATGG
CGGGGCTGACGCGAACGAGCACTTTCGCGCATTTCACTGGCCTGCTGCAC
CCCGAAAGGCTCTCGTTTTTTTACCTTCGGCACTACGAGTGGTCGCTGGG
CAGGAGCGTCGATGAGTGGGGGCAGGGAGAGGTTAGGGCTTGCGCCGCCG
GATGGTGAGGGTGGCAATAAACGCGAAGCTCATCAAGATGCAGCTCTTCG
ACCTGCTTCCGGCCAGCGTCCAGCGTGTGGTCTACGTCGACTGCGACGTC
ATCACGCAGCAACCGCTGGGTCCCTACCTCGCCGCGGTCGCCCGCGAGTG
GGGCGACGTCGACGAGAAGGCAGCGGCGATTATGAAGGCGGCGGTGACGG
TGGAAGAGGCGGCGACCGCGCGCGAGGTAAATAAGGGACTCGCCGTGTTG
CCAGCGGAGTCTTCGTCGTCCCTCCGCAAGCGAGAAGGGGGCGCAATCGA
GGGACCTCGACTGCCCCCGACATCGTCCCCGCCATCAGCAGCAGGAGAGG
CACCAGGATCACCAGCAACAGCAGGCACCAAGGGCGGCACTGCTGCCGCT
GCCGCTGCTGCCGCCGCTGCCGGCATGACGTCAACCTTGATAATATTTCC
GGATGCAGGCGGGCACAAGTTTCCGGTGTGCGCGGGCTGCGATATGGCGC
ACTCCGGCGTGGTGGCGCTCGCTCGGGGCCACTCGGAGCGGTGCCTCCAG
CTCTGGCACGACGCCTTTGTAGGCAAAAATGGAGATGGAGGCGGGAGCGG
GGTCGGGGTTAGGGGCGGGGGCGGGGGCGACGGCACAGGGACGGCGACCG
ACCAAGAGGCCCTGGACATCGCTTTGCGGAAGGGCTCGGGGTGTGAGGCC
CGCTGGGTGGACAGGGGCCACCTGCACTTCATGAAGGATCTGTTCGTGAT
GGCGGGGCTGACGCGAACGAGCACTTTCGCGCATTTCACTGGCCTGCTGC
ACCCCGAAAGGCTCTCGTTTTTTTACCTTCGGCACTACGAGTGGTCGCTG
GGCAGGAGCGTCGATGAGTGGGGGCAGGGAGAGGTTAGGGCTTGCGCCGC
CGGATGGTGA
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