mRNA_M-pyrifera_M_contig84127.19630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84127.19630.1
Unique NamemRNA_M-pyrifera_M_contig84127.19630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A5A8CC75_CAFRO (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC75_CAFRO)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:   16 DDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            DDEDD ++V +IDP TGEWGGPTRGG+ PEPTRFGDW+ KGR TDF
Sbjct:   38 DDEDD-DIVQMIDPATGEWGGPTRGGTMPEPTRFGDWERKGRCTDF 82          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A7S3ZNR7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.020e-10
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   19 DEDDGEMVDL-IDPDTG-EWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            DEDD +M D+ +D + G EWGGPTRGG  PEPTRFGDW+ KGR TDF
Sbjct:   74 DEDD-DMEDMFVDTNMGKEWGGPTRGGRMPEPTRFGDWERKGRATDF 119          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.220e-10
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   10 EEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            E+DDE+D E + +I P   EWGGP RGG   EPTRFGDW+ KGR  DF
Sbjct:   47 EDDDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.340e-9
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   10 EEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            E+DDE+D E + +I P   EWGGP RGG   EPTRFGDW+ KGR  DF
Sbjct:   48 EDDDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.370e-9
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   16 DDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            D++DDGE +  I P   E+GGPTRGG   EPTRFGDW+ KGR +DF
Sbjct:   51 DEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A482RUU1_9ARCH (DUF1674 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUU1_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   34 EMVDLI--DPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            EMV++    P   EWGGPTRGG +PEPTR+GDW+  GRV+DF
Sbjct:   60 EMVEMFIQGPAGMEWGGPTRGGKKPEPTRYGDWERSGRVSDF 101          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-9
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   10 EEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            E+DDE+D E + +I P   EWGGP RGG   EPTRFGDW+ KGR  DF
Sbjct:   43 EDDDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A7S3GRS8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRS8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.970e-9
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1
Query:   67 EWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            EW GPTRGG RPEPTRFGDW+ KGR +DF
Sbjct:   84 EWNGPTRGGKRPEPTRFGDWERKGRASDF 112          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A1Z5JHD7_FISSO (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHD7_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-8
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   61 TGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            T EWGGP RGG  PEPTR+GDW+ KGR TDF
Sbjct:   76 TMEWGGPRRGGRLPEPTRYGDWERKGRATDF 106          
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-8
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   19 DEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153
            DE+D E + L  P   EWGGP RGG   EPTRFGDW+ KGR TDF
Sbjct:   95 DEEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CC75_CAFRO1.970e-1676.09Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3ZNR7_9STRA2.020e-1068.09Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A024U2R8_9STRA9.220e-1060.42Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA1.340e-960.42Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA1.370e-960.87Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A482RUU1_9ARCH1.570e-961.90DUF1674 domain-containing protein n=1 Tax=archaeon... [more]
W4GYH8_9STRA1.690e-960.42Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3GRS8_9STRA1.970e-979.31Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A1Z5JHD7_FISSO1.390e-874.19Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA1.400e-862.22Succinate dehydrogenase assembly factor 4, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84127contigM-pyrifera_M_contig84127:81..236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.887518-CDS-M-pyrifera_M_contig84127:80..2361622816748.887518-CDS-M-pyrifera_M_contig84127:80..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84127 81..236 +
1692278155.242371-CDS-M-pyrifera_M_contig84127:80..2361692278155.242371-CDS-M-pyrifera_M_contig84127:80..236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84127 81..236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84127.19630.1prot_M-pyrifera_M_contig84127.19630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84127 81..236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84127.19630.1

>prot_M-pyrifera_M_contig84127.19630.1 ID=prot_M-pyrifera_M_contig84127.19630.1|Name=mRNA_M-pyrifera_M_contig84127.19630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
LEEEEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTD
F*
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mRNA from alignment at M-pyrifera_M_contig84127:81..236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84127.19630.1 ID=mRNA_M-pyrifera_M_contig84127.19630.1|Name=mRNA_M-pyrifera_M_contig84127.19630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig84127:81..236+ (Macrocystis pyrifera P11B4 male)
CTGGAGGAAGAAGAGGACGACGAGGATGACGGGGAGATGGTGGACCTCAT CGATCCCGACACCGGAGAGTGGGGAGGCCCCACGAGAGGCGGTTCTCGCC CAGAGCCCACCCGATTCGGAGACTGGCAAGTGAAGGGAAGGGTAACAGAC TTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84127:81..236+

>mRNA_M-pyrifera_M_contig84127.19630.1 ID=mRNA_M-pyrifera_M_contig84127.19630.1|Name=mRNA_M-pyrifera_M_contig84127.19630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig84127:81..236+ (Macrocystis pyrifera P11B4 male)
CTGGAGGAAGAAGAGGACGACGAGGATGACGGGGAGATGGTGGACCTCAT
CGATCCCGACACCGGAGAGTGGGGAGGCCCCACGAGAGGCGGTTCTCGCC
CAGAGCCCACCCGATTCGGAGACTGGCAAGTGAAGGGAAGGGTAACAGAC
TTTTGACTGGAGGAAGAAGAGGACGACGAGGATGACGGGGAGATGGTGGA
CCTCATCGATCCCGACACCGGAGAGTGGGGAGGCCCCACGAGAGGCGGTT
CTCGCCCAGAGCCCACCCGATTCGGAGACTGGCAAGTGAAGGGAAGGGTA
ACAGACTTTTGA
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