mRNA_M-pyrifera_M_contig84127.19630.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A5A8CC75_CAFRO (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC75_CAFRO) HSP 1 Score: 74.7 bits (182), Expect = 1.970e-16 Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 Query: 16 DDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 DDEDD ++V +IDP TGEWGGPTRGG+ PEPTRFGDW+ KGR TDF Sbjct: 38 DDEDD-DIVQMIDPATGEWGGPTRGGTMPEPTRFGDWERKGRCTDF 82
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A7S3ZNR7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.020e-10 Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 Query: 19 DEDDGEMVDL-IDPDTG-EWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 DEDD +M D+ +D + G EWGGPTRGG PEPTRFGDW+ KGR TDF Sbjct: 74 DEDD-DMEDMFVDTNMGKEWGGPTRGGRMPEPTRFGDWERKGRATDF 119
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 9.220e-10 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 10 EEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 E+DDE+D E + +I P EWGGP RGG EPTRFGDW+ KGR DF Sbjct: 47 EDDDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.340e-9 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 10 EEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 E+DDE+D E + +I P EWGGP RGG EPTRFGDW+ KGR DF Sbjct: 48 EDDDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.370e-9 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 16 DDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 D++DDGE + I P E+GGPTRGG EPTRFGDW+ KGR +DF Sbjct: 51 DEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A482RUU1_9ARCH (DUF1674 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUU1_9ARCH) HSP 1 Score: 57.8 bits (138), Expect = 1.570e-9 Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 Query: 34 EMVDLI--DPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 EMV++ P EWGGPTRGG +PEPTR+GDW+ GRV+DF Sbjct: 60 EMVEMFIQGPAGMEWGGPTRGGKKPEPTRYGDWERSGRVSDF 101
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.690e-9 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 10 EEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 E+DDE+D E + +I P EWGGP RGG EPTRFGDW+ KGR DF Sbjct: 43 EDDDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A7S3GRS8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRS8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.970e-9 Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 Query: 67 EWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 EW GPTRGG RPEPTRFGDW+ KGR +DF Sbjct: 84 EWNGPTRGGKRPEPTRFGDWERKGRASDF 112
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A1Z5JHD7_FISSO (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHD7_FISSO) HSP 1 Score: 55.5 bits (132), Expect = 1.390e-8 Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 1 Query: 61 TGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 T EWGGP RGG PEPTR+GDW+ KGR TDF Sbjct: 76 TMEWGGPRRGGRLPEPTRYGDWERKGRATDF 106
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.400e-8 Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1 Query: 19 DEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDF 153 DE+D E + L P EWGGP RGG EPTRFGDW+ KGR TDF Sbjct: 95 DEEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84127.19630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig84127.19630.1 >prot_M-pyrifera_M_contig84127.19630.1 ID=prot_M-pyrifera_M_contig84127.19630.1|Name=mRNA_M-pyrifera_M_contig84127.19630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp LEEEEDDEDDGEMVDLIDPDTGEWGGPTRGGSRPEPTRFGDWQVKGRVTDback to top mRNA from alignment at M-pyrifera_M_contig84127:81..236+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig84127.19630.1 ID=mRNA_M-pyrifera_M_contig84127.19630.1|Name=mRNA_M-pyrifera_M_contig84127.19630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig84127:81..236+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig84127:81..236+ >mRNA_M-pyrifera_M_contig84127.19630.1 ID=mRNA_M-pyrifera_M_contig84127.19630.1|Name=mRNA_M-pyrifera_M_contig84127.19630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig84127:81..236+ (Macrocystis pyrifera P11B4 male)back to top |