mRNA_M-pyrifera_M_contig84123.19628.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84123.19628.1
Unique NamemRNA_M-pyrifera_M_contig84123.19628.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: UPI0006255905 (cytochrome b5-like n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006255905)

HSP 1 Score: 84.7 bits (208), Expect = 2.250e-19
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   31 EELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTL 240
            EE+ +HN RESCWI +EG V DVT+Y+D HPG DE I+ +AGT+AT++F+D  HS  A+ I   L IG L
Sbjct:   10 EEINRHNGRESCWIVIEGKVYDVTKYIDQHPGGDEAILDDAGTNATQDFIDVGHSSDAREILETLFIGYL 79          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A151TRX8_CAJCA (Putative cytochrome b5 isoform 2 n=2 Tax=Phaseoleae TaxID=163735 RepID=A0A151TRX8_CAJCA)

HSP 1 Score: 82.0 bits (201), Expect = 3.020e-18
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   31 EELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTL 240
            EEL++HNT++ CWI V+G V DVT+YLD HPG D+ I+   G DATEEF D  HS SA+ +  +  IG L
Sbjct:   11 EELSQHNTKDDCWILVDGKVYDVTQYLDDHPGGDDVILATTGKDATEEFEDVGHSKSARELMEQYCIGEL 80          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: UPI001EF99A04 (cytochrome b5-like n=1 Tax=Diprion similis TaxID=362088 RepID=UPI001EF99A04)

HSP 1 Score: 81.6 bits (200), Expect = 3.860e-18
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   22 ISAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTL 240
             + +E+ +H  RESCWI V+G V DVT+YL+ HPG DE I+  +GTDAT+ F D  HS +AK I A L IG L
Sbjct:    7 FTLKEVNEHRGRESCWITVDGKVYDVTKYLEQHPGGDEEILNESGTDATKAFADVGHSSAAKEILATLLIGDL 79          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A7I8L4M4_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L4M4_SPIIN)

HSP 1 Score: 82.0 bits (201), Expect = 4.760e-18
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   22 ISAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIG 234
             S +E A+H+TRE CWI V+G V DVTEYLD HPG D+ IV  AG DATEEF D  HS +A+ +     +G
Sbjct:    8 FSPQETAQHDTREDCWIIVDGKVYDVTEYLDDHPGGDDIIVSVAGKDATEEFEDAGHSKTARELMKSFCVG 78          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A642UR00_DIURU (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UR00_DIURU)

HSP 1 Score: 79.3 bits (194), Expect = 3.040e-17
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   13 LREISAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTLKG 246
            ++E +A+E+A+HN+ +  W+   G+V DVT+Y+D HPG +E IV  AG DATE F D  HS  A+ + A LKIG L+G
Sbjct:    4 IKEYTADEVAEHNSVDDLWVIYNGEVYDVTKYVDEHPGGEEVIVDVAGGDATEAFDDIGHSDEAREVLASLKIGKLQG 81          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A7TNA5_VANPO (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=A7TNA5_VANPO)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-17
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   31 EELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTL 240
            +E+A+HNT ESCWI ++G V D T++LD HPG DE I+  AG DATE F D  HS  A +I  KL IG L
Sbjct:    8 QEIAEHNTTESCWIVIDGKVYDTTKFLDEHPGGDEIILDLAGQDATESFEDIGHSDEALKILKKLYIGDL 77          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A1W0ACX3_9STRA (Cytochrome b5 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACX3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.280e-17
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   13 LREISAEELAKHNTRESCWIAV----EGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTLK 243
            L++  A+E+AKHNT E CW+ +    E  V DVT+YLD HPG  E I+  AG DA EEF D  HS  A++  AK  IGTLK
Sbjct:    4 LKQFVADEVAKHNTTEDCWLIIGEANEKKVYDVTKYLDDHPGGPEIILDLAGRDANEEFEDIGHSTDARKALAKYLIGTLK 84          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A6J0BNR3_NEOLC (cytochrome b5-like n=5 Tax=Neodiprion TaxID=270857 RepID=A0A6J0BNR3_NEOLC)

HSP 1 Score: 78.6 bits (192), Expect = 6.270e-17
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   22 ISAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTL 240
             + +E+  H  RESCWI V+G V DVT+YLD HPG DE I+  +GTDAT+ F +  HS  AK I   L IG L
Sbjct:    7 FTLKEVNDHRGRESCWIVVDGKVYDVTKYLDQHPGGDEEILNESGTDATKAFAEVGHSSDAKEILGTLLIGHL 79          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A7N2LB42_QUELO (Cytochrome b5 heme-binding domain-containing protein n=3 Tax=Quercus TaxID=3511 RepID=A0A7N2LB42_QUELO)

HSP 1 Score: 78.6 bits (192), Expect = 8.070e-17
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   25 SAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIGTL 240
            S +E ++HNT++ CW+ ++G V DVT YLD HPG D+ ++   G DATEEF D  HS SAK +     IG L
Sbjct:    9 SMQEASEHNTKDDCWVVIDGKVYDVTTYLDEHPGGDDVVLAATGKDATEEFEDAGHSKSAKELMETFCIGEL 80          
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Match: A0A1D1XKV4_9ARAE (Putative cytochrome b5 isoform 2 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XKV4_9ARAE)

HSP 1 Score: 78.6 bits (192), Expect = 8.270e-17
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   22 ISAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRNAGTDATEEFVDQDHSLSAKRIAAKLKIG 234
             S +E A+HNTR+ CW+ ++G V DVTEYLD HPG D+ ++  AG DAT EF D  HS SA+ +     +G
Sbjct:    8 FSLKEAAQHNTRDDCWVVIDGKVYDVTEYLDEHPGGDDVLISAAGKDATFEFEDAGHSKSARELMKGYCVG 78          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84123.19628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00062559052.250e-1955.71cytochrome b5-like n=1 Tax=Athalia rosae TaxID=373... [more]
A0A151TRX8_CAJCA3.020e-1854.29Putative cytochrome b5 isoform 2 n=2 Tax=Phaseolea... [more]
UPI001EF99A043.860e-1853.42cytochrome b5-like n=1 Tax=Diprion similis TaxID=3... [more]
A0A7I8L4M4_SPIIN4.760e-1854.93Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A642UR00_DIURU3.040e-1748.72Cytochrome b5 heme-binding domain-containing prote... [more]
A7TNA5_VANPO3.290e-1755.71Cytochrome b5 heme-binding domain-containing prote... [more]
A0A1W0ACX3_9STRA5.280e-1751.85Cytochrome b5 n=1 Tax=Thraustotheca clavata TaxID=... [more]
A0A6J0BNR3_NEOLC6.270e-1752.05cytochrome b5-like n=5 Tax=Neodiprion TaxID=270857... [more]
A0A7N2LB42_QUELO8.070e-1748.61Cytochrome b5 heme-binding domain-containing prote... [more]
A0A1D1XKV4_9ARAE8.270e-1749.30Putative cytochrome b5 isoform 2 n=1 Tax=Anthurium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84123contigM-pyrifera_M_contig84123:55..309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog5057.CADACLAP00000052
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heme binding
EggNOG OGsCOG5274@1,KOG0537@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.8251133-CDS-M-pyrifera_M_contig84123:54..3091622816748.8251133-CDS-M-pyrifera_M_contig84123:54..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84123 55..309 +
1692278155.2040253-CDS-M-pyrifera_M_contig84123:54..3091692278155.2040253-CDS-M-pyrifera_M_contig84123:54..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84123 55..309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84123.19628.1prot_M-pyrifera_M_contig84123.19628.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84123 55..309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84123.19628.1

>prot_M-pyrifera_M_contig84123.19628.1 ID=prot_M-pyrifera_M_contig84123.19628.1|Name=mRNA_M-pyrifera_M_contig84123.19628.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MSEGLREISAEELAKHNTRESCWIAVEGDVLDVTEYLDSHPGTDEPIVRN
AGTDATEEFVDQDHSLSAKRIAAKLKIGTLKGWTK
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mRNA from alignment at M-pyrifera_M_contig84123:55..309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84123.19628.1 ID=mRNA_M-pyrifera_M_contig84123.19628.1|Name=mRNA_M-pyrifera_M_contig84123.19628.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig84123:55..309+ (Macrocystis pyrifera P11B4 male)
ATGTCTGAGGGCCTTCGTGAGATTAGCGCCGAGGAGCTTGCGAAGCACAA CACGCGCGAGTCTTGCTGGATCGCGGTGGAGGGCGATGTGTTGGACGTGA CTGAGTACCTTGATTCGCACCCGGGGACGGACGAGCCCATTGTACGCAAC GCTGGCACAGATGCGACGGAAGAATTCGTGGACCAGGACCATTCTCTGTC GGCGAAGCGGATCGCGGCCAAGCTCAAGATCGGCACGCTCAAGGGGTGGA CGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84123:55..309+

>mRNA_M-pyrifera_M_contig84123.19628.1 ID=mRNA_M-pyrifera_M_contig84123.19628.1|Name=mRNA_M-pyrifera_M_contig84123.19628.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig84123:55..309+ (Macrocystis pyrifera P11B4 male)
ATGTCTGAGGGCCTTCGTGAGATTAGCGCCGAGGAGCTTGCGAAGCACAA
CACGCGCGAGTCTTGCTGGATCGCGGTGGAGGGCGATGTGTTGGACGTGA
CTGAGTACCTTGATTCGCACCCGGGGACGGACGAGCCCATTGTACGCAAC
GCTGGCACAGATGCGACGGAAGAATTCGTGGACCAGGACCATTCTCTGTC
GGCGAAGCGGATCGCGGCCAAGCTCAAGATCGGCACGCTCAAGGGGTGGA
CGAAGATGTCTGAGGGCCTTCGTGAGATTAGCGCCGAGGAGCTTGCGAAG
CACAACACGCGCGAGTCTTGCTGGATCGCGGTGGAGGGCGATGTGTTGGA
CGTGACTGAGTACCTTGATTCGCACCCGGGGACGGACGAGCCCATTGTAC
GCAACGCTGGCACAGATGCGACGGAAGAATTCGTGGACCAGGACCATTCT
CTGTCGGCGAAGCGGATCGCGGCCAAGCTCAAGATCGGCACGCTCAAGGG
GTGGACGAAG
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