mRNA_M-pyrifera_M_contig84122.19627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84122.19627.1
Unique NamemRNA_M-pyrifera_M_contig84122.19627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A7X5WQW4_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WQW4_9ACTN)

HSP 1 Score: 140 bits (353), Expect = 1.860e-40
Identity = 87/127 (68.50%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRRRAIDVG 381
            MSA DLAAVIV++VCL VV  +VLAVQ LVRTLRELR TVD+LRGATLPMV DLH+TVS+AG ELERVD V+               L Y+A+APPLIKTAS V GAGRAT RLR G  RRRAIDVG
Sbjct:    1 MSAVDLAAVIVTIVCLVVVGALVLAVQVLVRTLRELRTTVDELRGATLPMVDDLHATVSRAGGELERVDKVIGRAERITGTVDIASRLTYRAMAPPLIKTASFVVGAGRATRRLRSG-GRRRAIDVG 126          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A6N8YAN6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YAN6_9ACTN)

HSP 1 Score: 108 bits (271), Expect = 1.260e-27
Identity = 68/126 (53.97%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRRRAIDV 378
            M+A DLAAVIV++VCL  V+V+ +A   LVRT+RELR  VDDLR + LPMV DL STV+KA  EL RVD V+               L Y+A APPLIK  S+V+GAG+A  RLR  R  RRA+D+
Sbjct:    1 MTAVDLAAVIVTLVCLATVVVLTMAXXXLVRTMRELRDVVDDLRDSALPMVDDLRSTVTKADAELHRVDRVIGRAERIAATADHASRLTYRAFAPPLIKGLSLVSGAGQAGRRLRERRRHRRALDL 126          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A6N9EMF5_9ACTN (DUF948 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9EMF5_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 2.440e-23
Identity = 65/126 (51.59%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRRRAIDV 378
            MSA DLAAVIV+VVCL            LVRT+RELR  VDDLR + LPMV DLH+TV+KA  EL RVD V+               L ++A APPLIK  S+V+GAG+A  RLR  R  RR +D+
Sbjct:    1 MSAVDLAAVIVTVVCLXXXXXXXXXXXXLVRTMRELRDVVDDLRDSALPMVDDLHATVTKADAELHRVDRVIGRAERIAATVDHASRLTHRAFAPPLIKGLSLVSGAGQAGRRLRDRRRSRRDLDL 126          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A6B0WKT5_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WKT5_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 6.170e-22
Identity = 63/126 (50.00%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRRRAIDV 378
            M+A DLAAVIV+VVC              VRT+RELR  VDDLR + LPMV DL +TV+KA  EL RVD V+               L Y+A APPLIK  S+V+GAG+A  RLR  R  RR++DV
Sbjct:    1 MTAVDLAAVIVTVVCXXXXXXXXXXXXXXVRTMRELRDVVDDLRDSALPMVDDLRTTVTKADAELHRVDRVIGRAERIAATADHASRLTYRAFAPPLIKGLSLVSGAGQAGRRLRERRRHRRSLDV 126          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A538D4S4_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D4S4_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 4.080e-19
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRRRAIDVGSRVR 393
            MSA D+AAV+  V+C+ V    V+ V+ ++R +R+L    + LR  T+P+V DL +TV +AGD+L+RV+AVL               L Y+A+ PPL+KT + ++GAGRAT RLRG      A+  GS  R
Sbjct:    1 MSAIDVAAVVAIVMCVAVTGAFVVVVRRMIRVVRQLDALAESLRVDTVPLVSDLRATVRQAGDDLDRVEAVLGKAETIATTVDAASRLTYRALRPPLVKTMAFMSGAGRATRRLRGAPA---AVGPGSDAR 128          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A6B1BA91_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1BA91_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 9.820e-18
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  106 LRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRR 363
            LR T+D+LRG +LPM  DL +TV+KAGDELERVD V+               L  K   PPLIKTA+I+ GAGRAT  LR GR+R+
Sbjct:   36 LRETIDELRGESLPMFDDLRTTVTKAGDELERVDEVIGRVERVVATADVASRLTQKVFTPPLIKTAAIMKGAGRATLTLRRGRSRK 121          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A2D8LRB7_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LRB7_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 9.120e-14
Identity = 54/128 (42.19%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLRGGRTRRRAIDVGS 384
            MSA DLAAVIV++VCL V                         R  TLPMV DLHSTV++A DEL+RVD V+               LAY+A AP +I+  S++AGAGRA   +   R R  AI+V S
Sbjct:    1 MSATDLAAVIVTIVCLAVXXXXXXXXXXXXXXXXXXXXXXXXXRANTLPMVDDLHSTVNRASDELDRVDGVIDRAERVTATADVASRLAYRAFAPGVIRAMSVLAGAGRAGRVIARPRRRSGAIEVRS 128          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A538GV10_9ACTN (DUF948 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538GV10_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 9.110e-13
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRLR 345
            MSA D AAV  +   +  V+ +++A+ +L RTL  LRVTVDDLR  T+P++ D+ +TV +A  ELERVDA+L               LAY A + P+IK  ++ AG  RA  R R
Sbjct:    1 MSAGDWAAVAAAGAAVLAVVGVLVAMASLTRTLAALRVTVDDLRRQTVPLLGDVQTTVRQANAELERVDALLGTAESISTTVDSASRLAYLAFSNPVIKALALGAGTSRAVRRFR 115          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: A0A6I3F9Q5_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F9Q5_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 3.160e-10
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   58 IVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRL 342
            +V+ +AVQ+L+ TLR LR TV+DLR  TL  V +L +TV+ A  E+ERVD++L               LA+  +  PL+K AS    + RAT RL
Sbjct:   17 VVVAMAVQSLIGTLRSLRETVEDLRAETLSAVAELRATVALANGEIERVDSLLDTAETVSARVEATSRLAWLVMRNPLVKLASASVASDRATRRL 111          
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Match: UPI001E2B0030 (hypothetical protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E2B0030)

HSP 1 Score: 63.2 bits (152), Expect = 4.880e-10
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   58 IVMVLAVQALVRTLRELRVTVDDLRGATLPMVHDLHSTVSKAGDELERVDAVLXXXXXXXXXXXXXXXLAYKAVAPPLIKTASIVAGAGRATWRL 342
            +V+ +AVQ+L+ TLR LR TVDDLR  TLP + +L +TV  A  EL+RVD++L               L +  V  PL+K AS      R   RL
Sbjct:   17 VVVAMAVQSLITTLRSLRETVDDLRRETLPAIAELRATVDAANGELQRVDSLLDTAEDVSARVDATSKLTWMVVRNPLVKLASASVATERVARRL 111          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84122.19627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7X5WQW4_9ACTN1.860e-4068.50Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6N8YAN6_9ACTN1.260e-2753.97Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6N9EMF5_9ACTN2.440e-2351.59DUF948 domain-containing protein n=2 Tax=Acidimicr... [more]
A0A6B0WKT5_9ACTN6.170e-2250.00Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A538D4S4_9ACTN4.080e-1941.98Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6B1BA91_9ACTN9.820e-1853.49Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2D8LRB7_9ACTN9.120e-1442.19Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]
A0A538GV10_9ACTN9.110e-1342.61DUF948 domain-containing protein n=1 Tax=Actinomyc... [more]
A0A6I3F9Q5_9ACTN3.160e-1042.11Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI001E2B00304.880e-1041.05hypothetical protein n=1 Tax=Rhabdothermincola sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84122contigM-pyrifera_M_contig84122:123..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.7872086-CDS-M-pyrifera_M_contig84122:122..5181622816748.7872086-CDS-M-pyrifera_M_contig84122:122..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84122 123..518 +
1692278155.1902313-CDS-M-pyrifera_M_contig84122:122..5181692278155.1902313-CDS-M-pyrifera_M_contig84122:122..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84122 123..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84122.19627.1prot_M-pyrifera_M_contig84122.19627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84122 123..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84122.19627.1

>prot_M-pyrifera_M_contig84122.19627.1 ID=prot_M-pyrifera_M_contig84122.19627.1|Name=mRNA_M-pyrifera_M_contig84122.19627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MSAADLAAVIVSVVCLGVVIVMVLAVQALVRTLRELRVTVDDLRGATLPM
VHDLHSTVSKAGDELERVDAVLDKAERISTTADVASRLAYKAVAPPLIKT
ASIVAGAGRATWRLRGGRTRRRAIDVGSRVR*
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mRNA from alignment at M-pyrifera_M_contig84122:123..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84122.19627.1 ID=mRNA_M-pyrifera_M_contig84122.19627.1|Name=mRNA_M-pyrifera_M_contig84122.19627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig84122:123..518+ (Macrocystis pyrifera P11B4 male)
ATGTCCGCCGCCGATCTCGCCGCCGTCATCGTCTCGGTCGTCTGTCTGGG CGTCGTGATCGTCATGGTGCTCGCCGTGCAGGCGCTCGTGCGCACCCTGC GCGAGCTGCGGGTCACGGTCGACGACCTGCGCGGCGCCACGCTCCCCATG GTCCACGACCTGCACTCCACCGTCTCCAAGGCCGGCGACGAACTCGAGCG CGTCGATGCCGTTCTCGACAAGGCCGAACGGATCTCGACCACTGCCGACG TGGCGTCGCGACTCGCCTACAAGGCCGTCGCCCCGCCCCTGATCAAGACC GCGTCGATCGTGGCCGGCGCCGGGAGGGCAACCTGGCGCCTGCGGGGCGG ACGCACCCGCCGGCGAGCCATCGACGTGGGGAGTCGGGTGCGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84122:123..518+

>mRNA_M-pyrifera_M_contig84122.19627.1 ID=mRNA_M-pyrifera_M_contig84122.19627.1|Name=mRNA_M-pyrifera_M_contig84122.19627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig84122:123..518+ (Macrocystis pyrifera P11B4 male)
ATGTCCGCCGCCGATCTCGCCGCCGTCATCGTCTCGGTCGTCTGTCTGGG
CGTCGTGATCGTCATGGTGCTCGCCGTGCAGGCGCTCGTGCGCACCCTGC
GCGAGCTGCGGGTCACGGTCGACGACCTGCGCGGCGCCACGCTCCCCATG
GTCCACGACCTGCACTCCACCGTCTCCAAGGCCGGCGACGAACTCGAGCG
CGTCGATGCCGTTCTCGACAAGGCCGAACGGATCTCGACCACTGCCGACG
TGGCGTCGCGACTCGCCTACAAGGCCGTCGCCCCGCCCCTGATCAAGACC
GCGTCGATCGTGGCCGGCGCCGGGAGGGCAACCTGGCGCCTGCGGGGCGG
ACGCACCCGCCGGCGAGCCATCGACGTGGGGAGTCGGGTGCGATGAATGT
CCGCCGCCGATCTCGCCGCCGTCATCGTCTCGGTCGTCTGTCTGGGCGTC
GTGATCGTCATGGTGCTCGCCGTGCAGGCGCTCGTGCGCACCCTGCGCGA
GCTGCGGGTCACGGTCGACGACCTGCGCGGCGCCACGCTCCCCATGGTCC
ACGACCTGCACTCCACCGTCTCCAAGGCCGGCGACGAACTCGAGCGCGTC
GATGCCGTTCTCGACAAGGCCGAACGGATCTCGACCACTGCCGACGTGGC
GTCGCGACTCGCCTACAAGGCCGTCGCCCCGCCCCTGATCAAGACCGCGT
CGATCGTGGCCGGCGCCGGGAGGGCAACCTGGCGCCTGCGGGGCGGACGC
ACCCGCCGGCGAGCCATCGACGTGGGGAGTCGGGTGCGATGA
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