mRNA_M-pyrifera_M_contig84121.19626.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84121.19626.1
Unique NamemRNA_M-pyrifera_M_contig84121.19626.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A6L5DHR6_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DHR6_9INSE)

HSP 1 Score: 84.0 bits (206), Expect = 1.740e-18
Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+E++  S+ + YL+ +IKV+GKTGNL +  V +      VT+NA+   SKRYLKYLT+++L    +RD+LR+V++GKD+Y ++  ++   E EEEE
Sbjct:   56 EDEIMDVSKFEQYLKERIKVNGKTGNL-SNAVTLERNKARVTINADVHFSKRYLKYLTKKYLKKNNLRDWLRVVANGKDSYELRYFQINNQEDEEEE 151          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A3Q3X6L1_MOLML (Ribosomal protein L22 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3X6L1_MOLML)

HSP 1 Score: 82.8 bits (203), Expect = 2.190e-18
Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+ ++  +  + +L+ +IKV+GK GNLG G V +      +TVN+E   SKRYLKYLT+++L    +RD+LR+V++ K++Y ++  ++  DE EEEE
Sbjct:   25 EDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVNSEVPFSKRYLKYLTKKYLKKHNLRDWLRVVANTKESYELRYFQINQDEEEEEE 121          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A1D1UY72_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UY72_RAMVA)

HSP 1 Score: 86.3 bits (212), Expect = 2.380e-18
Identity = 44/98 (44.90%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAG-GVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+ +++P++ + +L  +IKV GKTGNLG    VE L G   + VNA+   SKRYLKYLT+++L    +RD+LR+V+SG D Y ++  ++G DE  E+E
Sbjct:  174 EDGILEPADFEQFLRERIKVLGKTGNLGKSVSVEKLAGKNHIVVNADIAFSKRYLKYLTKKYLKKNNLRDWLRVVASGADKYELRYFQIGNDEDNEKE 271          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A674PRH9_TAKRU (Uncharacterized protein n=2 Tax=Acanthomorphata TaxID=123368 RepID=A0A674PRH9_TAKRU)

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-18
Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+ ++  +  + +L+ +IKV+GK GNLG G V +      +TVN+E   SKRYLKYLT+++L    +RD+LR+V++ K++Y ++  ++  DE EEEE
Sbjct:   33 EDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYFQINQDEEEEEE 129          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: UPI001ED86E95 (60S ribosomal protein L22-like isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86E95)

HSP 1 Score: 82.8 bits (203), Expect = 3.480e-18
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+ +++ S  + YL+ +IKV+GKTGNLG   V +      VTVNA+   SKRYLKYLT+++L    +RD+LR+V+SG+ TY ++  ++   E EEE+
Sbjct:   43 EDNIMEVSNFEKYLQERIKVNGKTGNLG-NSVTLERNKSKVTVNADIPFSKRYLKYLTKKYLKKNNLRDWLRVVASGEHTYELRYFQINNQEDEEED 138          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A8C4C442_9TELE (60S ribosomal protein L22-like n=4 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4C442_9TELE)

HSP 1 Score: 82.4 bits (202), Expect = 3.630e-18
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+ ++  S  + +L+ +IKV+GK+GNLG G V +      +TV++E  +SKRYLKYLT+++L    +RD+LR+V++ K++Y ++  ++  DE EEEE
Sbjct:   31 EDGIMDASNFEQFLQERIKVNGKSGNLGGGLVSIDRNKSKITVSSEVPLSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYFQINQDEEEEEE 127          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: UPI0018F65B99 (60S ribosomal protein L22-like n=3 Tax=Canidae TaxID=9608 RepID=UPI0018F65B99)

HSP 1 Score: 82.0 bits (201), Expect = 5.140e-18
Identity = 38/97 (39.18%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            E+ +++ +  + +L+G+I V+GK GNLG G V +      +TV +E   SKRYLKYLT+++L    +RD+LR+V++ K++Y ++  ++  DE EEE+
Sbjct:   30 EDGIMEAANFEQFLQGRITVNGKAGNLGGGDVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEED 126          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A090LF47_STRRB (Ribosomal protein L22e family-containing protein n=4 Tax=Strongyloides TaxID=6247 RepID=A0A090LF47_STRRB)

HSP 1 Score: 82.0 bits (201), Expect = 5.990e-18
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAEK-ISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEE 282
            E+ ++K +  + YL+  IK  GKTG L  GG++V      +TV +EK  SKRYLKYLT+++L    +RD+LR+++S K+TY +K  ++  ++ EE
Sbjct:   35 EDGILKTANFEEYLQKAIKYKGKTGQLEVGGIKVEATKNSITVTSEKEFSKRYLKYLTKKYLKKHSLRDWLRVIASNKNTYELKYFQINNEDDEE 129          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A674BCE5_SALTR (60S ribosomal protein L22-like n=3 Tax=Salmoninae TaxID=504568 RepID=A0A674BCE5_SALTR)

HSP 1 Score: 80.9 bits (198), Expect = 6.470e-18
Identity = 40/94 (42.55%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   10 VIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAE-KISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE 288
            + K S L+ +L+ +IKV+GK GNLG G V +      +TV++E   SKRYLKYLT+++L    +RD+LR+V++ K++Y ++  ++  DE EEE+
Sbjct:    2 IKKHSFLEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYFQINQDEEEEED 95          
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Match: A0A075BFI8_9CILI (Ribosomal protein L22 n=1 Tax=Cryptocaryon irritans TaxID=153251 RepID=A0A075BFI8_9CILI)

HSP 1 Score: 81.6 bits (200), Expect = 6.570e-18
Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDE-DVTVNAEKISKRYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEE 285
            E++V+  S+ +S+L+ +IKV+GK GNLG+  V   EG +  V+   E  SKRYLKYLT+++L   ++RDYL +V++ K+TY++K   +  +E EEE
Sbjct:   29 EDKVLMTSDFESFLKKRIKVNGKKGNLGSEVVVKAEGSKLTVSAELEHFSKRYLKYLTKKYLKKQQLRDYLHVVATEKNTYSLKYFNIHNEEMEEE 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84121.19626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5DHR6_9INSE1.740e-1844.33Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
A0A3Q3X6L1_MOLML2.190e-1841.24Ribosomal protein L22 n=2 Tax=Percomorphaceae TaxI... [more]
A0A1D1UY72_RAMVA2.380e-1844.90Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A674PRH9_TAKRU2.700e-1841.24Uncharacterized protein n=2 Tax=Acanthomorphata Ta... [more]
UPI001ED86E953.480e-1844.3360S ribosomal protein L22-like isoform X1 n=2 Tax=... [more]
A0A8C4C442_9TELE3.630e-1841.2460S ribosomal protein L22-like n=4 Tax=Denticeps c... [more]
UPI0018F65B995.140e-1839.1860S ribosomal protein L22-like n=3 Tax=Canidae Tax... [more]
A0A090LF47_STRRB5.990e-1841.05Ribosomal protein L22e family-containing protein n... [more]
A0A674BCE5_SALTR6.470e-1842.5560S ribosomal protein L22-like n=3 Tax=Salmoninae ... [more]
A0A075BFI8_9CILI6.570e-1843.75Ribosomal protein L22 n=1 Tax=Cryptocaryon irritan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84121contigM-pyrifera_M_contig84121:336..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score83.2
Seed ortholog evalue7.4e-14
Seed eggNOG ortholog34506.g4985
Preferred namerpl-22
KEGG koko:K02891
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal L22e protein family
EggNOG OGs1KZFJ@119089,3A5RD@33154,3BPIF@33208,3D6B8@33213,40E64@6231,411K4@6236,KOG3434@1,KOG3434@2759
COG Functional cat.J
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size292
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.72813-CDS-M-pyrifera_M_contig84121:335..3651622816748.72813-CDS-M-pyrifera_M_contig84121:335..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84121 336..365 +
1692278155.1585312-CDS-M-pyrifera_M_contig84121:335..3651692278155.1585312-CDS-M-pyrifera_M_contig84121:335..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84121 336..365 +
1622816748.7446144-CDS-M-pyrifera_M_contig84121:611..8721622816748.7446144-CDS-M-pyrifera_M_contig84121:611..872Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84121 612..872 +
1692278155.1732092-CDS-M-pyrifera_M_contig84121:611..8721692278155.1732092-CDS-M-pyrifera_M_contig84121:611..872Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84121 612..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84121.19626.1prot_M-pyrifera_M_contig84121.19626.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84121 336..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84121.19626.1

>prot_M-pyrifera_M_contig84121.19626.1 ID=prot_M-pyrifera_M_contig84121.19626.1|Name=mRNA_M-pyrifera_M_contig84121.19626.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
ENEVIKPSELKSYLEGKIKVDGKTGNLGAGGVEVLEGDEDVTVNAEKISK
RYLKYLTRRFLHSIKMRDYLRIVSSGKDTYAIKLVKVGGDEGEEEE*
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mRNA from alignment at M-pyrifera_M_contig84121:336..872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84121.19626.1 ID=mRNA_M-pyrifera_M_contig84121.19626.1|Name=mRNA_M-pyrifera_M_contig84121.19626.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig84121:336..872+ (Macrocystis pyrifera P11B4 male)
GAAAACGAGGTCATCAAGCCCTCTGAGTTGGTAAGGCCGAGCGTTGGGAG GGGGTGTGGTAGGGTGATGGGGGCTGGGAAAGTGCGAAATGGGATGGAGC TGGACAACTCGAATTTCTACTTCGCCAACGCACCCTGTTGGGATGGATGT AGTCGTTGGAAATGTTGTAGTAGAGTTGTGTGGTTGTGTCGCATGTGGTT GGGTGTGGTGTGGAAGGAGGTTTGATGGAGAAAGGGAGGGAAAGAGGTTT GGATGGAGTTGGTTTTGGTTTTGCAGAAGTCATACTTGGAAGGGAAGATC AAGGTTGATGGCAAGACAGGCAACCTTGGAGCAGGTGGCGTTGAAGTGCT GGAAGGAGACGAGGACGTGACGGTGAACGCGGAGAAGATCTCAAAGCGTT ACCTCAAATACCTCACCCGCCGCTTCCTCCACTCCATCAAGATGCGAGAC TACCTCCGCATCGTTTCTTCCGGAAAGGACACCTACGCCATCAAGCTCGT CAAGGTCGGAGGCGACGAGGGAGAGGAGGAGGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84121:336..872+

>mRNA_M-pyrifera_M_contig84121.19626.1 ID=mRNA_M-pyrifera_M_contig84121.19626.1|Name=mRNA_M-pyrifera_M_contig84121.19626.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig84121:336..872+ (Macrocystis pyrifera P11B4 male)
GAAAACGAGGTCATCAAGCCCTCTGAGTTGGAAAACGAGGTCATCAAGCC
CTCTGAGTTGAAGTCATACTTGGAAGGGAAGATCAAGGTTGATGGCAAGA
CAGGCAACCTTGGAGCAGGTGGCGTTGAAGTGCTGGAAGGAGACGAGGAC
GTGACGGTGAACGCGGAGAAGATCTCAAAGCGTTACCTCAAATACCTCAC
CCGCCGCTTCCTCCACTCCATCAAGATGCGAGACTACCTCCGCATCGTTT
CTTCCGGAAAGGACACCTACGCCATCAAGCTCGTCAAGGTCGGAGGCGAC
GAGGGAGAGGAGGAGGAATAAAAGTCATACTTGGAAGGGAAGATCAAGGT
TGATGGCAAGACAGGCAACCTTGGAGCAGGTGGCGTTGAAGTGCTGGAAG
GAGACGAGGACGTGACGGTGAACGCGGAGAAGATCTCAAAGCGTTACCTC
AAATACCTCACCCGCCGCTTCCTCCACTCCATCAAGATGCGAGACTACCT
CCGCATCGTTTCTTCCGGAAAGGACACCTACGCCATCAAGCTCGTCAAGG
TCGGAGGCGACGAGGGAGAGGAGGAGGAATAA
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