mRNA_M-pyrifera_M_contig84111.19622.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84111.19622.1
Unique NamemRNA_M-pyrifera_M_contig84111.19622.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A7S4MFY2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MFY2_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 1.110e-22
Identity = 51/118 (43.22%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVPKSEPGL 357
            T  R WA LS YEK K    + + ++ G +   E++E LK  D + E + E+ + FP   E I+ ERD FL  SIR CPG+ +V VVG GH  GIE  W   +DRA LL +P    GL
Sbjct:  155 TFKRTWANLSSYEKLKIFCAIVYVLVMGPTIDAEEVEKLKNGDIMTEMMEEMAQKFPGTLETIVYERDRFLTGSIRDCPGDIVVGVVGLGHLKGIEANWEKEIDRAKLLVIPSKSKGL 272          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A7X6XBN9_9FIRM (TraB family protein (Fragment) n=1 Tax=Erysipelothrix sp. TaxID=38403 RepID=A0A7X6XBN9_9FIRM)

HSP 1 Score: 90.5 bits (223), Expect = 3.380e-19
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGI-EQQWGTAVDRAALLHVPKSEPGLVARAVSWCFSTTI 396
            T  R+W+ LS +EK K + L+  ++      +EE IE++K+ D L+ A+ EV+  FP+VAE ++ ERD ++A SI+  PGN IV V+G  HA GI +   G  +D +AL  +   EP  +++ V W    +I
Sbjct:  123 TFKRIWSLLSFWEKLKLIALVIGSLFENEEISEETIEEMKQQDILDSALKEVSTEFPTVAEVLIFERDRYMAQSIKNSPGNKIVVVIGAAHAPGIIKHLHGEDIDISALEVI--KEPSWLSKQVKWLLPVSI 252          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A1V5X6N5_9DELT (TraB family protein n=1 Tax=Deltaproteobacteria bacterium ADurb.Bin207 TaxID=1852869 RepID=A0A1V5X6N5_9DELT)

HSP 1 Score: 89.7 bits (221), Expect = 2.380e-18
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 ATIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVP 339
            AT+ R WA LSL+ K +   LL  A+ +    TEE IE+LK+ D L E + E     P V E ++ ERD FL  SIR+ PG T+VAVVG  H  G+       VDR AL  +P
Sbjct:  128 ATLKRTWAALSLWNKARVAALLMVALTSKEEITEERIEELKERDTLNETLQEFAEALPQVKEPLIDERDRFLISSIREAPGETVVAVVGAAHVQGMVSNLEATVDRDALSVIP 240          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A848Z7N2_9DELT (TraB/GumN family protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A848Z7N2_9DELT)

HSP 1 Score: 87.4 bits (215), Expect = 1.680e-17
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVP-KSEPGLVARAVSWCFSTTIGAL 405
            T+ R W  + ++EK K +  L  ++       E D+E +K+ D L+  +AEV +  P++  A++ ERD +LA+ IR  PG+TIVA VG GH  GI++ W   +D + L   P K + GL  +   W     IGAL
Sbjct:  132 TLSRAWGIMGIWEKIKLIFQLVLSLGDATDIDEADVEKMKEQDMLDSVLAEVGKSHPAIRNALIDERDKYLAEKIRTAPGDTIVAAVGAGHVPGIKRYWNDEIDISELDQRPRKKKSGLFFK---WFIPLFIGAL 263          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A2N2A8E9_9FIRM (TraB family protein (Fragment) n=1 Tax=Firmicutes bacterium HGW-Firmicutes-6 TaxID=2013787 RepID=A0A2N2A8E9_9FIRM)

HSP 1 Score: 86.7 bits (213), Expect = 2.130e-17
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVPKSEPGLVARAVSWCFSTTI 396
            T  R+W  L L+EK K +  L  +M +    TE  +E+LK+SD +E A+ EV   FPS+ + ++ ERD ++A SI+Q PG+T+VA++G  HA GI ++         L  +P  E   +++A  W   T I
Sbjct:  140 TFMRIWRSLGLWEKVKLLTALISSMFSEEEITEAKLEELKQSDMIELALKEVGGKFPSIKKGLVDERDQYMAQSIKQAPGDTVVAIIGAAHAPGIIRELNNTNSLVELDKIP--EQSWLSKASGWLIPTMI 268          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A847PFW1_9BACT (TraB/GumN family protein n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A847PFW1_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 3.240e-17
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVPKSEPGL 357
            T  R+W +L  + K K   +L  ++ +    TEE+IE LK  D L  A+ E+   FP +   ++ ERD +LA+ I+  PGN IVAVVG GH  GI+++     D  AL  +PKS P L
Sbjct:  130 TFTRIWKKLGFFGKLKLFFMLILSIFSNEEITEEEIEKLKSEDVLTAALNELAVSFPRLKSTLIDERDQYLAEKIKNAPGNRIVAVVGAGHIPGIKEEIHKEHDLTALTFIPKSSPWL 247          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A7V5XBE5_9GAMM (TraB/GumN family protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5XBE5_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 4.420e-17
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVPKSEPGLVARAVSWCFSTTIGAL 405
            T+ R WA        + +  L+ ++ T    +E++IE LK SD L   + E +   PSV +A++ ERD +LA+ I   PG T+VAVVG GH  GI + +GTA+D AAL  +P   P  + R + W     +  L
Sbjct:  130 TLKRAWAGAGFGALLRMIWSLTLSLFTSEEISEQEIEKLKGSDELAVMLDEFSGALPSVKQALIDERDAYLAEKIHAAPGQTVVAVVGAGHVPGIRRLFGTAIDMAALEQIPP--PRRLFRIIGWAVPVLLAGL 261          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A1W1H7C1_9DELT (TraB n=2 Tax=Desulfamplus magnetovallimortis TaxID=1246637 RepID=A0A1W1H7C1_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 1.940e-16
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTA--VDRAALLHVPKSEPGLVARAVSWCFSTTI 396
            T+ R+W  + L+EK K +  L  ++ +    TEEDIE++KK D L+  +A+V +  P + + ++ ERD +L+  IR  PGNTIVAVVG GH AGI++   +   +  + L  +P    G + + + W   T I
Sbjct:  170 TLARVWRSMGLWEKLKLMFQLLMSVGSSEEITEEDIEEMKKEDILQTLLADVKKSHPIMEKVLIDERDQYLSAKIRNAPGNTIVAVVGAGHLAGIKRYMASEKEISTSELDALPPG--GNLGKMLKWAIPTLI 300          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A1W9PWM9_9DELT (Conjugal transfer protein TraB n=1 Tax=Desulfococcus sp. 4484_241 TaxID=1968522 RepID=A0A1W9PWM9_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 3.020e-16
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVPKSEPGLVARAVSWCFSTTIGAL 405
            T+ R W  + L+ K K +V    ++L     TEED+E LK+ D L+  +AE     P + + ++ ERD +LA SIR  PG  +VAVVG GH AGI + W +++D  +L  +P    G V   V W     I A+
Sbjct:  130 TLARAWRSMGLWGKLKLMVHAIASILGADDITEEDVEKLKQEDMLQAVLAEFEASHPVLRKILIDERDQYLAHSIRNAPGQRVVAVVGAGHMAGICRYWDSSIDVESLKALPPRGIGHV--MVKWSIPALIVAV 261          
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Match: A0A6J4Y8D8_9DELT (Pheromone shutdown protein n=1 Tax=Olavius algarvensis Delta 1 endosymbiont TaxID=334747 RepID=A0A6J4Y8D8_9DELT)

HSP 1 Score: 82.0 bits (201), Expect = 3.450e-16
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    4 TIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAIAEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQWGTAVDRAALLHVP 339
            T+ R W  +  + K K V  L  ++       EEDIE +K+ D LE  +AEV +  P + + ++ ERD +LA+ IR  PGN IVAVVG GH  GI++ W   +D  +L  +P
Sbjct:  132 TLSRTWRAMGFWGKIKLVFQLVLSLGEVDDIKEEDIEKMKQEDVLESLLAEVGKSLPVLRDILIDERDQYLAEKIRNAPGNKIVAVVGAGHVPGIQKYWNKNIDIQSLEKLP 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84111.19622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MFY2_9EUKA1.110e-2243.22Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7X6XBN9_9FIRM3.380e-1937.88TraB family protein (Fragment) n=1 Tax=Erysipeloth... [more]
A0A1V5X6N5_9DELT2.380e-1844.25TraB family protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A848Z7N2_9DELT1.680e-1736.30TraB/GumN family protein n=1 Tax=Desulfobacteracea... [more]
A0A2N2A8E9_9FIRM2.130e-1736.64TraB family protein (Fragment) n=1 Tax=Firmicutes ... [more]
A0A847PFW1_9BACT3.240e-1739.83TraB/GumN family protein n=1 Tax=Candidatus Atriba... [more]
A0A7V5XBE5_9GAMM4.420e-1736.57TraB/GumN family protein n=1 Tax=Chromatiales bact... [more]
A0A1W1H7C1_9DELT1.940e-1636.09TraB n=2 Tax=Desulfamplus magnetovallimortis TaxID... [more]
A0A1W9PWM9_9DELT3.020e-1637.31Conjugal transfer protein TraB n=1 Tax=Desulfococc... [more]
A0A6J4Y8D8_9DELT3.450e-1639.29Pheromone shutdown protein n=1 Tax=Olavius algarve... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84111contigM-pyrifera_M_contig84111:3..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score94.0
Seed ortholog evalue6.3e-17
Seed eggNOG ortholog96561.Dole_2685
Preferred nametraB
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM TraB family protein
EggNOG OGs1MWJ0@1224,2MI76@213118,2WJQM@28221,42P2H@68525,COG1916@1,COG1916@2
COG Functional cat.S
Best tax levelDesulfobacterales
Best eggNOG OGNA|NA|NA
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.4905488-CDS-M-pyrifera_M_contig84111:2..2261622816748.4905488-CDS-M-pyrifera_M_contig84111:2..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84111 3..226 +
1692278155.0139408-CDS-M-pyrifera_M_contig84111:2..2261692278155.0139408-CDS-M-pyrifera_M_contig84111:2..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84111 3..226 +
1622816748.5040553-CDS-M-pyrifera_M_contig84111:387..6011622816748.5040553-CDS-M-pyrifera_M_contig84111:387..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84111 388..601 +
1692278155.0269322-CDS-M-pyrifera_M_contig84111:387..6011692278155.0269322-CDS-M-pyrifera_M_contig84111:387..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84111 388..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84111.19622.1prot_M-pyrifera_M_contig84111.19622.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84111 3..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84111.19622.1

>prot_M-pyrifera_M_contig84111.19622.1 ID=prot_M-pyrifera_M_contig84111.19622.1|Name=mRNA_M-pyrifera_M_contig84111.19622.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
ATIGRLWAQLSLYEKTKGVVLLSWAMLTGLSATEEDIEDLKKSDFLEEAI
AEVTRIFPSVAEAILAERDLFLADSIRQCPGNTIVAVVGKGHAAGIEQQW
GTAVDRAALLHVPKSEPGLVARAVSWCFSTTIGALRWTACLFLPSG
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mRNA from alignment at M-pyrifera_M_contig84111:3..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84111.19622.1 ID=mRNA_M-pyrifera_M_contig84111.19622.1|Name=mRNA_M-pyrifera_M_contig84111.19622.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=599bp|location=Sequence derived from alignment at M-pyrifera_M_contig84111:3..601+ (Macrocystis pyrifera P11B4 male)
GCAACGATTGGGCGGCTGTGGGCACAGCTCTCGCTGTACGAGAAGACAAA GGGAGTGGTGCTGCTCAGCTGGGCAATGCTCACCGGCCTCTCGGCCACAG AGGAGGACATTGAGGACTTGAAGAAGAGCGACTTCCTCGAGGAAGCCATC GCAGAGGTCACGCGCATCTTCCCCTCAGTGGCTGAAGCTATTTTGGCCGA GCGCGACCTTTTCCTTGCTGACAGGTGCGGCTACCCTCTCGCATCATTTT CCTGCCCTCCTCCACCTCTCTCTTTCTCTCTCTCCCTCCCCTCCCTCTCT CTCCTTCTTCTCGTCACATCTCCTCTGACTCACGCGAACGGCTCGGTGCT GTCTGTCGTTCCTCGGAATTTACTGACGACAGCAGCATCCGACAATGCCC CGGAAACACCATCGTGGCGGTGGTGGGCAAGGGCCACGCTGCGGGCATCG AGCAGCAGTGGGGGACGGCCGTGGACCGCGCGGCGCTGCTGCACGTGCCC AAGAGCGAGCCCGGCCTCGTCGCGCGTGCGGTGTCGTGGTGCTTCTCCAC CACCATCGGCGCCCTCCGCTGGACCGCTTGCCTCTTCCTGCCCAGTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84111:3..601+

>mRNA_M-pyrifera_M_contig84111.19622.1 ID=mRNA_M-pyrifera_M_contig84111.19622.1|Name=mRNA_M-pyrifera_M_contig84111.19622.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig84111:3..601+ (Macrocystis pyrifera P11B4 male)
GCAACGATTGGGCGGCTGTGGGCACAGCTCTCGCTGTACGAGAAGACAAA
GGGAGTGGTGCTGCTCAGCTGGGCAATGCTCACCGGCCTCTCGGCCACAG
AGGAGGACATTGAGGACTTGAAGAAGAGCGACTTCCTCGAGGAAGCCATC
GCAGAGGTCACGCGCATCTTCCCCTCAGTGGCTGAAGCTATTTTGGCCGA
GCGCGACCTTTTCCTTGCTGACAGGCAACGATTGGGCGGCTGTGGGCACA
GCTCTCGCTGTACGAGAAGACAAAGGGAGTGGTGCTGCTCAGCTGGGCAA
TGCTCACCGGCCTCTCGGCCACAGAGGAGGACATTGAGGACTTGAAGAAG
AGCGACTTCCTCGAGGAAGCCATCGCAGAGGTCACGCGCATCTTCCCCTC
AGTGGCTGAAGCTATTTTGGCCGAGCGCGACCTTTTCCTTGCTGACAGCA
TCCGACAATGCCCCGGAAACACCATCGTGGCGGTGGTGGGCAAGGGCCAC
GCTGCGGGCATCGAGCAGCAGTGGGGGACGGCCGTGGACCGCGCGGCGCT
GCTGCACGTGCCCAAGAGCGAGCCCGGCCTCGTCGCGCGTGCGGTGTCGT
GGTGCTTCTCCACCACCATCGGCGCCCTCCGCTGGACCGCTTGCCTCTTC
CTGCCCAGTGGTCATCCGACAATGCCCCGGAAACACCATCGTGGCGGTGG
TGGGCAAGGGCCACGCTGCGGGCATCGAGCAGCAGTGGGGGACGGCCGTG
GACCGCGCGGCGCTGCTGCACGTGCCCAAGAGCGAGCCCGGCCTCGTCGC
GCGTGCGGTGTCGTGGTGCTTCTCCACCACCATCGGCGCCCTCCGCTGGA
CCGCTTGCCTCTTCCTGCCCAGTGGT
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