mRNA_M-pyrifera_M_contig8411.19621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8411.19621.1
Unique NamemRNA_M-pyrifera_M_contig8411.19621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8411.19621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8411contigM-pyrifera_M_contig8411:9571..11283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1152
Cds size1152
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8411.19621.1prot_M-pyrifera_M_contig8411.19621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8411 9571..11283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.430891-CDS-M-pyrifera_M_contig8411:9570..98601622816748.430891-CDS-M-pyrifera_M_contig8411:9570..9860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8411 9571..9860 -
1692278154.9818184-CDS-M-pyrifera_M_contig8411:9570..98601692278154.9818184-CDS-M-pyrifera_M_contig8411:9570..9860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8411 9571..9860 -
1622816748.4429028-CDS-M-pyrifera_M_contig8411:10094..103261622816748.4429028-CDS-M-pyrifera_M_contig8411:10094..10326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8411 10095..10326 -
1692278154.9929903-CDS-M-pyrifera_M_contig8411:10094..103261692278154.9929903-CDS-M-pyrifera_M_contig8411:10094..10326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8411 10095..10326 -
1622816748.4537494-CDS-M-pyrifera_M_contig8411:10653..112831622816748.4537494-CDS-M-pyrifera_M_contig8411:10653..11283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8411 10654..11283 -
1692278155.0031323-CDS-M-pyrifera_M_contig8411:10653..112831692278155.0031323-CDS-M-pyrifera_M_contig8411:10653..11283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8411 10654..11283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8411.19621.1

>prot_M-pyrifera_M_contig8411.19621.1 ID=prot_M-pyrifera_M_contig8411.19621.1|Name=mRNA_M-pyrifera_M_contig8411.19621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=384bp
RSIAGRFQQDSSLGRATRAKEAQYHRAAHLADLDERDRRQRQQHQQRGDR
NASSCPGLTLTVTIQDVERRTHGRSRPPATTSASLVVPPTSISRSSLRLS
RPISGLKRPPSATTAAATESMRKPASPRKENRQTATERAVRVYSHIPGVA
SSGSCRPWSPRGAGSTSPRGSRPPWKEMRGPAAERRQSTHAKKQRHPLPW
PLQDGSFERQAVSVSSHHGQMDPKEEAGNGAAQSRRLPVRPPTRRSGPRG
RFSRPASARAVWRDEGMPKRSSHQAVGVLHNQLALCDCEEPGWGSTDRRV
FVGSPVTHGRKSSSTEQPPSPSRGVRRQPATAEVPPAAQRARILELQRLA
TERGELEAQLAEVKRLMRESNLGNTCWKAAAAGI
back to top

mRNA from alignment at M-pyrifera_M_contig8411:9571..11283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8411.19621.1 ID=mRNA_M-pyrifera_M_contig8411.19621.1|Name=mRNA_M-pyrifera_M_contig8411.19621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at M-pyrifera_M_contig8411:9571..11283- (Macrocystis pyrifera P11B4 male)
AGGTCTATCGCCGGAAGATTCCAGCAGGACTCCTCGCTTGGTCGTGCCAC
GAGGGCGAAGGAGGCTCAGTATCATCGGGCTGCGCACCTCGCGGACCTCG
ACGAGCGAGACCGCCGACAGCGCCAACAGCACCAACAGCGCGGTGACAGA
AACGCCAGCTCGTGCCCCGGCCTTACGCTGACTGTGACAATCCAAGACGT
CGAACGTAGAACACACGGACGATCCCGACCACCAGCGACGACGAGTGCGT
CGCTGGTTGTTCCTCCAACGAGCATCTCGCGCAGCAGCCTGAGGCTTTCG
CGCCCCATCTCAGGTTTGAAGAGGCCGCCCTCTGCGACAACAGCAGCCGC
GACGGAGTCGATGAGAAAGCCGGCCAGCCCTCGGAAAGAGAACCGTCAGA
CAGCTACCGAGCGGGCTGTTCGTGTATACAGCCATATTCCAGGCGTCGCC
TCAAGCGGTAGCTGTAGGCCCTGGTCTCCAAGGGGCGCGGGGTCTACTTC
GCCGCGCGGCTCTCGGCCACCCTGGAAAGAGATGCGCGGACCGGCTGCAG
AACGGCGACAAAGCACGCACGCAAAAAAACAGCGTCACCCTCTACCTTGG
CCTTTGCAAGATGGAAGTTTTGAGCGGCAGGTACGCGTGTCTTGTCTTTA
CATGTTGCGGAGCGCCACGCGGCACGCAAAGACATGTTTTACCCATTTTC
AGTCACGTTCAATTCCATCAAGACCCCGGGCGGGGCTTCTCCGATTTTGG
TCGCTGGTATCTTCTCCGTTGCGTCGAATGAGGACACGGTATCTACCCTG
ATCCTTCCTGTCCATGGCATTGGATTCTAAAGGGCTTTTAATTGAATTGT
CCAGTCGGCTAGATCACTCGGATGCAGTGTTCCCAACTCACGGACCGTCA
TCGTTCGAGTTTCAACTAACGGAGCGCGCGTGACTTCCGCCGACTTGTGA
ATCGCAGGCGGTATCTGTGTCGTCCCACCACGGACAAATGGACCCCAAGG
AAGAGGCAGGAAACGGTGCAGCGCAATCGCGAAGGTTGCCTGTACGACCG
CCCACAAGGCGTAGCGGCCCTCGCGGGCGCTTCTCTCGTCCGGCTAGCGC
CCGTGCTGTCTGGCGAGACGAAGGTATGCCCAAACGAAGTAGCCACCAAG
CTGTCGGGGTACTCCATAACCAGCTTGCCCTCTGTGATTGTCTATCTTTC
TCCATCCGGCCTACCTCGACACGGGCCGTTGTTATTTCCTTCGTTCGACC
AGACGAACAGCAATACGGTATACTGGACCTCGTTCACACACGCTCACAAA
CACAGTTATTGGTTGGCATGTCCTGTACAGCGATTTCGTTCTAAGCCCAA
AACAAACTTCGTCTGGCGCTCGCAGAGGCCGGGCACCCAGGTGAACCTCG
CGTGGACGCCGCTTACAGAGCAGGCGAGGAGCCGGGGTGGGGGAGCACGG
ACAGACGCGTTTTCGTGGGGTCGCCAGTGACGCACGGGAGGAAATCTTCA
TCAACGGAACAACCCCCCTCGCCGTCGAGAGGGGTTCGTCGGCAACCCGC
TACGGCAGAAGTTCCTCCTGCGGCACAACGAGCCCGCATTTTAGAACTGC
AGAGGCTCGCTACCGAGAGGGGGGAGCTAGAGGCACAACTCGCAGAGGTT
AAGCGACTCATGAGAGAGTCGAATTTGGGAAATACGTGCTGGAAGGCAGC
AGCCGCCGGAATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8411:9571..11283-

>mRNA_M-pyrifera_M_contig8411.19621.1 ID=mRNA_M-pyrifera_M_contig8411.19621.1|Name=mRNA_M-pyrifera_M_contig8411.19621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2304bp|location=Sequence derived from alignment at M-pyrifera_M_contig8411:9571..11283- (Macrocystis pyrifera P11B4 male)
AGGTCTATCGCCGGAAGATTCCAGCAGGACTCCTCGCTTGGTCGTGCCAC
GAGGGCGAAGGAGGCTCAGTATCATCGGGCTGCGCACCTCGCGGACCTCG
ACGAGCGAGACCGCCGACAGCGCCAACAGCACCAACAGCGCGGTGACAGA
AACGCCAGCTCGTGCCCCGGCCTTACGCTGACTGTGACAATCCAAGACGT
CGAACGTAGAACACACGGACGATCCCGACCACCAGCGACGACGAGTGCGT
CGCTGGTTGTTCCTCCAACGAGCATCTCGCGCAGCAGCCTGAGGCTTTCG
CGCCCCATCTCAGGTTTGAAGAGGCCGCCCTCTGCGACAACAGCAGCCGC
GACGGAGTCGATGAGAAAGCCGGCCAGCCCTCGGAAAGAGAACCGTCAGA
CAGCTACCGAGCGGGCTGTTCGTGTATACAGCCATATTCCAGGCGTCGCC
TCAAGCGGTAGCTGTAGGCCCTGGTCTCCAAGGGGCGCGGGGTCTACTTC
GCCGCGCGGCTCTCGGCCACCCTGGAAAGAGATGCGCGGACCGGCTGCAG
AACGGCGACAAAGCACGCACGCAAAAAAACAGCGTCACCCTCTACCTTGG
CCTTTGCAAGATGGAAGTTTTGAGCGGCAGAGGTCTATCGCCGGAAGATT
CCAGCAGGACTCCTCGCTTGGTCGTGCCACGAGGGCGAAGGAGGCTCAGT
ATCATCGGGCTGCGCACCTCGCGGACCTCGACGAGCGAGACCGCCGACAG
CGCCAACAGCACCAACAGCGCGGTGACAGAAACGCCAGCTCGTGCCCCGG
CCTTACGCTGACTGTGACAATCCAAGACGTCGAACGTAGAACACACGGAC
GATCCCGACCACCAGCGACGACGAGTGCGTCGCTGGTTGTTCCTCCAACG
AGCATCTCGCGCAGCAGCCTGAGGCTTTCGCGCCCCATCTCAGGTTTGAA
GAGGCCGCCCTCTGCGACAACAGCAGCCGCGACGGAGTCGATGAGAAAGC
CGGCCAGCCCTCGGAAAGAGAACCGTCAGACAGCTACCGAGCGGGCTGTT
CGTGTATACAGCCATATTCCAGGCGTCGCCTCAAGCGGTAGCTGTAGGCC
CTGGTCTCCAAGGGGCGCGGGGTCTACTTCGCCGCGCGGCTCTCGGCCAC
CCTGGAAAGAGATGCGCGGACCGGCTGCAGAACGGCGACAAAGCACGCAC
GCAAAAAAACAGCGTCACCCTCTACCTTGGCCTTTGCAAGATGGAAGTTT
TGAGCGGCAGGCGGTATCTGTGTCGTCCCACCACGGACAAATGGACCCCA
AGGAAGAGGCAGGAAACGGTGCAGCGCAATCGCGAAGGTTGCCTGTACGA
CCGCCCACAAGGCGTAGCGGCCCTCGCGGGCGCTTCTCTCGTCCGGCTAG
CGCCCGTGCTGTCTGGCGAGACGAAGGTATGCCCAAACGAAGTAGCCACC
AAGCTGTCGGGGTACTCCATAACCAGCTTGCCCTCTGTGATTGCGGTATC
TGTGTCGTCCCACCACGGACAAATGGACCCCAAGGAAGAGGCAGGAAACG
GTGCAGCGCAATCGCGAAGGTTGCCTGTACGACCGCCCACAAGGCGTAGC
GGCCCTCGCGGGCGCTTCTCTCGTCCGGCTAGCGCCCGTGCTGTCTGGCG
AGACGAAGGTATGCCCAAACGAAGTAGCCACCAAGCTGTCGGGGTACTCC
ATAACCAGCTTGCCCTCTGTGATTGCGAGGAGCCGGGGTGGGGGAGCACG
GACAGACGCGTTTTCGTGGGGTCGCCAGTGACGCACGGGAGGAAATCTTC
ATCAACGGAACAACCCCCCTCGCCGTCGAGAGGGGTTCGTCGGCAACCCG
CTACGGCAGAAGTTCCTCCTGCGGCACAACGAGCCCGCATTTTAGAACTG
CAGAGGCTCGCTACCGAGAGGGGGGAGCTAGAGGCACAACTCGCAGAGGT
TAAGCGACTCATGAGAGAGTCGAATTTGGGAAATACGTGCTGGAAGGCAG
CAGCCGCCGGAATCGCGAGGAGCCGGGGTGGGGGAGCACGGACAGACGCG
TTTTCGTGGGGTCGCCAGTGACGCACGGGAGGAAATCTTCATCAACGGAA
CAACCCCCCTCGCCGTCGAGAGGGGTTCGTCGGCAACCCGCTACGGCAGA
AGTTCCTCCTGCGGCACAACGAGCCCGCATTTTAGAACTGCAGAGGCTCG
CTACCGAGAGGGGGGAGCTAGAGGCACAACTCGCAGAGGTTAAGCGACTC
ATGAGAGAGTCGAATTTGGGAAATACGTGCTGGAAGGCAGCAGCCGCCGG
AATC
back to top