mRNA_M-pyrifera_M_contig84076.19618.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84076.19618.1
Unique NamemRNA_M-pyrifera_M_contig84076.19618.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A517PT61_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PT61_9PLAN)

HSP 1 Score: 266 bits (680), Expect = 3.670e-90
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query:    1 MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIRDPKTGM 390
            MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIRDPKTGM
Sbjct:   11 MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIRDPKTGM 140          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A518FLV0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FLV0_9PLAN)

HSP 1 Score: 166 bits (420), Expect = 1.310e-50
Identity = 81/126 (64.29%), Postives = 97/126 (76.98%), Query Frame = 1
Query:    1 MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIRDP 378
            MMGC++V+GGGF IY LD+T +A+S IE LGG V  DTAWGST+YE V LNDTPATD DL+ V KLQP++GVY         GLK LHGLAV EIDLTG  VSD+A+A++LATIPA + C IIR+P
Sbjct:   10 MMGCIVVIGGGFTIYCLDSTQHAISHIEDLGGSVLHDTAWGSTVYEKVYLNDTPATDDDLKYVSKLQPWAGVYXXXXXXXXXGLKQLHGLAVYEIDLTGTSVSDAAVADVLATIPAYLDCQIIREP 135          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A6I6AK76_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AK76_9PLAN)

HSP 1 Score: 127 bits (320), Expect = 2.890e-36
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1
Query:  187 VRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIRDPKTGM 390
            +RK+QPYSGVYLRNTNITDQGLK LHGLAVDEID+TG DVSDSAIAELLATIPADV+CHIIRDPK GM
Sbjct:    1 MRKVQPYSGVYLRNTNITDQGLKQLHGLAVDEIDVTGTDVSDSAIAELLATIPADVECHIIRDPKIGM 68          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A3D3R4V3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R4V3_9PLAN)

HSP 1 Score: 118 bits (295), Expect = 1.580e-31
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   13 LIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIP 345
            +I+V  G I Y    T  ++SRIE LGGGVR D AWG+T+YEIV+L+DT ATD+D++ VR L P  GVYL+NT ITD GL+ LHGL++ EIDL+G  V+ + I EL  +IP
Sbjct:   27 MILVIFGLINYQ---TTSSISRIENLGGGVRHDMAWGATVYEIVSLDDTDATDADMKYVRNLWPCYGVYLKNTEITDVGLQQLHGLSLYEIDLSGTKVTPAGIKELRQSIP 134          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A518A418_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A418_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 3.670e-31
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVD 279
            +MGC +V+GGGF IY LD+T +A+S IE LGG V  DTAWGST+YE V+LNDTPATD DL  +RKLQP++GVYLR T +   G K  H   +D
Sbjct:   10 VMGCSVVIGGGFTIYCLDSTQHAISHIEDLGGSVLHDTAWGSTVYEKVDLNDTPATDDDLRYIRKLQPWAGVYLRMT-VCQTGSKRYHQPVID 101          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A517X715_9PLAN (Uncharacterized protein n=3 Tax=Gimesia maris TaxID=122 RepID=A0A517X715_9PLAN)

HSP 1 Score: 113 bits (282), Expect = 8.030e-30
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   13 LIVVGGGFII--YHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIP 345
            +I   G F++  Y    T  ++S IE LGGGVR D AWG+T+YEIV+L+DT ATD+D++ VR L P  GVYL+NT ITD GLK LHGL+++EIDLTG          L  +IP
Sbjct:    1 MIAAVGTFVLIDYLWLATTSSISHIENLGGGVRHDMAWGATVYEIVSLDDTDATDADMKYVRNLWPCHGVYLKNTKITDDGLKELHGLSLNEIDLTGXXXXXXXXXXLRQSIP 113          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A517W1Z1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W1Z1_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 6.500e-29
Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    1 MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIR 372
            ++G   V+GG F IY+L  T  A++ IE LGG V  DTAW +T+YE V LNDT ATD DL  VR+LQPY G                    V EIDLTG ++SDSA+ E L+TIPAD  C I R
Sbjct:   10 IIGFTAVIGGFFGIYYLLATPLAIAHIEHLGGSVLHDTAWCATVYEKVYLNDTTATDDDLRYVRQLQPYRGXXXXXXXXXXXXXXXXXXXEVYEIDLTGTNISDSAVDEFLSTIPADFNCQIKR 133          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A350K7D0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K7D0_9PLAN)

HSP 1 Score: 106 bits (264), Expect = 7.780e-27
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   10 CLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDL 291
            C+ V+   F +    TT+ ++S IE LGGGVR D AWG+T+YEIV+L+DT ATD+D++ VR L P  GVYL+NT ITD GLK LHGL++ EIDL
Sbjct:   24 CITVILVIFGLIDYQTTS-SISHIENLGGGVRHDMAWGATVYEIVSLDDTDATDADMKYVRNLWPCHGVYLKNTKITDDGLKELHGLSLYEIDL 116          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A518FLQ8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FLQ8_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.890e-24
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNLNDTPATDSDLECVRKLQP 204
            +MGC++V+GGGF IY LD+T +A S IE LGG V  DTAWGST+YE V+LNDTPATD DL  VRK QP
Sbjct:   10 VMGCIVVIGGGFTIYCLDSTQHASSHIEDLGGSVLHDTAWGSTVYEKVDLNDTPATDDDLRYVRKHQP 77          
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Match: A0A518FLQ7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FLQ7_9PLAN)

HSP 1 Score: 82.4 bits (202), Expect = 1.760e-18
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  214 VYLRNTNITDQGLKHLHGLAVDEIDLTGADVSDSAIAELLATIPADVKCHIIRDP 378
            +YLRNTNITD+GLK LHGLAV EIDLT   VSD+A+AELLATIPA + C IIR P
Sbjct:    1 MYLRNTNITDEGLKQLHGLAVYEIDLTETRVSDAAVAELLATIPAYLDCQIIRKP 55          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84076.19618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A517PT61_9PLAN3.670e-90100.00Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518FLV0_9PLAN1.310e-5064.29Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A6I6AK76_9PLAN2.890e-3689.71Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A3D3R4V3_9PLAN1.580e-3155.86Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518A418_9PLAN3.670e-3160.22Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517X715_9PLAN8.030e-3052.21Uncharacterized protein n=3 Tax=Gimesia maris TaxI... [more]
A0A517W1Z1_9PLAN6.500e-2949.19Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A350K7D0_9PLAN7.780e-2757.45Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518FLQ8_9PLAN1.890e-2467.65Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518FLQ7_9PLAN1.760e-1874.55Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84076contigM-pyrifera_M_contig84076:335..727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.1340837-CDS-M-pyrifera_M_contig84076:334..7271622816748.1340837-CDS-M-pyrifera_M_contig84076:334..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84076 335..727 -
1692278154.7656739-CDS-M-pyrifera_M_contig84076:334..7271692278154.7656739-CDS-M-pyrifera_M_contig84076:334..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84076 335..727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84076.19618.1prot_M-pyrifera_M_contig84076.19618.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84076 335..727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84076.19618.1

>prot_M-pyrifera_M_contig84076.19618.1 ID=prot_M-pyrifera_M_contig84076.19618.1|Name=mRNA_M-pyrifera_M_contig84076.19618.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MMGCLIVVGGGFIIYHLDTTNYAVSRIEKLGGGVRSDTAWGSTLYEIVNL
NDTPATDSDLECVRKLQPYSGVYLRNTNITDQGLKHLHGLAVDEIDLTGA
DVSDSAIAELLATIPADVKCHIIRDPKTGM*
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mRNA from alignment at M-pyrifera_M_contig84076:335..727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84076.19618.1 ID=mRNA_M-pyrifera_M_contig84076.19618.1|Name=mRNA_M-pyrifera_M_contig84076.19618.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig84076:335..727- (Macrocystis pyrifera P11B4 male)
ATGATGGGCTGCCTCATCGTCGTGGGCGGCGGTTTCATCATCTATCACCT GGACACAACGAATTATGCAGTTTCGCGCATCGAGAAACTGGGGGGAGGGG TTCGTTCCGACACCGCCTGGGGATCAACCCTCTACGAAATCGTCAATCTC AACGACACGCCTGCTACGGACAGTGATCTCGAATGTGTGCGGAAGCTTCA ACCGTACTCAGGTGTCTATCTCAGAAATACGAACATCACGGATCAGGGCC TCAAACATCTGCATGGTCTCGCGGTAGACGAAATCGACCTGACCGGCGCC GATGTTTCAGATTCCGCAATCGCAGAGCTGCTGGCCACAATCCCCGCAGA CGTAAAGTGTCACATCATACGTGATCCGAAGACTGGGATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84076:335..727-

>mRNA_M-pyrifera_M_contig84076.19618.1 ID=mRNA_M-pyrifera_M_contig84076.19618.1|Name=mRNA_M-pyrifera_M_contig84076.19618.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig84076:335..727- (Macrocystis pyrifera P11B4 male)
ATGATGGGCTGCCTCATCGTCGTGGGCGGCGGTTTCATCATCTATCACCT
GGACACAACGAATTATGCAGTTTCGCGCATCGAGAAACTGGGGGGAGGGG
TTCGTTCCGACACCGCCTGGGGATCAACCCTCTACGAAATCGTCAATCTC
AACGACACGCCTGCTACGGACAGTGATCTCGAATGTGTGCGGAAGCTTCA
ACCGTACTCAGGTGTCTATCTCAGAAATACGAACATCACGGATCAGGGCC
TCAAACATCTGCATGGTCTCGCGGTAGACGAAATCGACCTGACCGGCGCC
GATGTTTCAGATTCCGCAATCGCAGAGCTGCTGGCCACAATCCCCGCAGA
CGTAAAGTGTCACATCATACGTGATCCGAAGACTGGGATGTAGATGATGG
GCTGCCTCATCGTCGTGGGCGGCGGTTTCATCATCTATCACCTGGACACA
ACGAATTATGCAGTTTCGCGCATCGAGAAACTGGGGGGAGGGGTTCGTTC
CGACACCGCCTGGGGATCAACCCTCTACGAAATCGTCAATCTCAACGACA
CGCCTGCTACGGACAGTGATCTCGAATGTGTGCGGAAGCTTCAACCGTAC
TCAGGTGTCTATCTCAGAAATACGAACATCACGGATCAGGGCCTCAAACA
TCTGCATGGTCTCGCGGTAGACGAAATCGACCTGACCGGCGCCGATGTTT
CAGATTCCGCAATCGCAGAGCTGCTGGCCACAATCCCCGCAGACGTAAAG
TGTCACATCATACGTGATCCGAAGACTGGGATGTAG
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