mRNA_M-pyrifera_M_contig8407.19616.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8407.19616.1
Unique NamemRNA_M-pyrifera_M_contig8407.19616.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A6H5K8I7_9PHAE (PFK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8I7_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.040e-83
Identity = 123/149 (82.55%), Postives = 134/149 (89.93%), Query Frame = 1 
Query:    1 MCEVPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIY---EHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            MCEVPNL+V+F  SL  NREITVNTQGSPTCYN+LLGPRDCIIY   +HVRD++KPPTAKAFLRAGPR ELHF PT+VRGAIVTCGGLCPGLNSV+HHLV T+L TYKA KVFGIRGGFAGFYDE TP +E+TSEGVE LQHQPGSVLG
Sbjct:    1 MCEVPNLNVKFPSSLAPNREITVNTQGSPTCYNKLLGPRDCIIYGECQHVRDKNKPPTAKAFLRAGPRPELHFNPTEVRGAIVTCGGLCPGLNSVVHHLVETMLVTYKADKVFGIRGGFAGFYDEATPAVELTSEGVEFLQHQPGSVLG 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: D7G165_ECTSI (Pyrophosphate-dependent phosphofructose kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G165_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.760e-53
Identity = 87/143 (60.84%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:   10 VPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            VPNL  +F PS   N +I  ++ GS T Y +L+G +D ++YEHVR   + P AK FLRAGPR  LHF PT+VR A+VTCGGLCPGLNSVIHHLV TL   Y A KVFGI GGFAGF+DE  PP EM+ + VEL+QH+ GS+LG
Sbjct:  190 VPNLKTKFKPSGVANLDIASDSLGSVTHYTKLIGEQDIVLYEHVRGPGRMPAAKGFLRAGPRASLHFKPTEVRAAVVTCGGLCPGLNSVIHHLVLTLFNIYDAEKVFGIVGGFAGFWDENHPPREMSVKDVELVQHEGGSILG 332
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BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A835ZIU1_9STRA (Pyrophosphate-dependent phosphofructose kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIU1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.690e-52
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:    1 MCEVPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMT-SEGVELLQHQPGSVLG 438
            +C+VPNL++R   +   N EI  N+ G  T YN+LLG  DCIIYEHVRD+ K P A+AFLRAGPR +LHF PT V   IVTCG LCPGLNSVIHHLV+TL   Y A K++GIRGG+ GF+D   PP+++  S+ +E LQ + GS+LG
Sbjct:   48 LCQVPNLALRMPTAGVANHEIVKNSSGGSTFYNKLLGDEDCIIYEHVRDKTKAPVARAFLRAGPRAKLHFDPTTVNACIVTCGLLCPGLNSVIHHLVDTLKNNYNAGKIYGIRGGWGGFWDPEKPPIQLCQSKDLEFLQSRAGSILG 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A6H5KDC4_9PHAE (PFK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC4_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.090e-50
Identity = 84/143 (58.74%), Postives = 103/143 (72.03%), Query Frame = 1 
Query:   10 VPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            VPNL  +F PS   N +I  ++ G  T Y +L+G +D ++Y+HVR   + P AK FLRAGPR  LHF P +VR A+VTCGGLCPGLNSVIHHLV TL   Y A KVFGI GGFAGF+DE  PP EM+ + VEL+QH+ GS+LG
Sbjct:  227 VPNLKTKFKPSGVANLDIASDSLGKVTHYTKLIGEKDIVLYDHVRGPGRMPAAKGFLRAGPRASLHFKPEEVRAAVVTCGGLCPGLNSVIHHLVLTLFNIYGAEKVFGIVGGFAGFWDENHPPKEMSVKDVELIQHEGGSILG 369
[Close]
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A835YV15_9STRA (Pyrophosphate-dependent phosphofructose kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV15_9STRA)

HSP 1 Score: 175 bits (444), Expect = 6.090e-50
Identity = 85/151 (56.29%), Postives = 104/151 (68.87%), Query Frame = 1 
Query:    1 MCEVPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSE-----GVELLQHQPGSVLG 438
            +C+VP LS +   +   N EI  NT G PT YNRL G  +CII EHVRD+ K P AKAFLRAGPR +LHF P KV  A+VTCG LCPGLNSVIHHL +TL   Y A KV+G+RGG+ GF++  TP +E+  +     G E LQH+ GS+LG
Sbjct:   48 LCQVPRLSAKLPSAGVPNLEIKSNTSGQPTYYNRLTGDTECIIDEHVRDERKAPVAKAFLRAGPRAKLHFDPVKVNAAVVTCGTLCPGLNSVIHHLRDTLTTIYGAQKVYGVRGGWGGFHNPHTPVIELHDDALDVSGRESLQHRAGSILG 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A836C7Q7_9STRA (Pyrophosphate-dependent phosphofructokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q7_9STRA)

HSP 1 Score: 167 bits (423), Expect = 4.880e-47
Identity = 81/146 (55.48%), Postives = 99/146 (67.81%), Query Frame = 1 
Query:    1 MCEVPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            MCEVPNL+  F P    N  +T  + G P+ +NRLLGPRDCI+ EHV    K    KA LRAGPR  LHF P +   AIVTCGGLCPGLNSVIH++  TLL+ Y A +V GI+GGF GFYD    P+E+T + V  LQ+Q G++LG
Sbjct:   18 MCEVPNLNEAFPPCNMRNDCMTQQSTGEPSLWNRLLGPRDCILLEHVCGPGKARKLKALLRAGPRPLLHFPPKETVAAIVTCGGLCPGLNSVIHYVTETLLQNYGARRVIGIKGGFGGFYDADLEPLELTMDAVNGLQNQGGTLLG 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A835ZA90_9STRA (Pyrophosphate-dependent phosphofructokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA90_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.100e-43
Identity = 78/148 (52.70%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:    1 MCEVPNLSVRFAPSLTLNREITVN--TQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            + EVP LS  F PS+ +  ++ V   + GSP  +NRLLGP DC+I + +    +P   KA LRAGPR  LHF P K   AIVTCGGLCPGLNSVIHHL  TL++ Y A +V G+RGGFAGFY+    P+++T   V+ LQHQ G++LG
Sbjct:   79 LAEVPCLSDYF-PSMNIRNDMMVQALSGGSPAFWNRLLGPDDCVIIDPICGPDRPGHKKALLRAGPRPLLHFDPQKTVAAIVTCGGLCPGLNSVIHHLTETLVKNYSAQRVIGVRGGFAGFYNRQLTPLDLTVSRVDRLQHQGGTLLG 225
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BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: H6WB78_VAULI (Pyrophosphate-dependant phosphofructokinase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB78_VAULI)

HSP 1 Score: 154 bits (390), Expect = 6.540e-42
Identity = 75/144 (52.08%), Postives = 96/144 (66.67%), Query Frame = 1 
Query:    7 EVPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            +V NLS  F+ S   N  +   + G  + +NRL+G  DC++++ +    +PP  +AFLRAGPR  LHF P     AIVTCGGLCPGLNSVIHHL  TL+R YKA +V GIRGGFAGF D+   P+E+T   V  LQHQ G++LG
Sbjct:   63 KVQNLSDDFSSSEIKNDLMVQESSGESSYWNRLVGELDCVLFDVICGPDRPPQKQAFLRAGPRPVLHFEPKNTVAAIVTCGGLCPGLNSVIHHLTETLVRNYKAKRVIGIRGGFAGFVDKNLEPIELTLIKVNRLQHQGGTLLG 206
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BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: K8Z818_NANGC (6-phosphofructo-2-kinase / fructose-2,6-bisphosphatase (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z818_NANGC)

HSP 1 Score: 146 bits (368), Expect = 1.280e-38
Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:    1 MCEVPNLSVRFAPSLTLN-REITVNTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHK-VFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG 438
            + E+PNL   F  +   N  +++  T G    YN+LLG +D II + VR +  PP  K ++RAGPR+ELHF P KVR AIVTCGGLCPGLN+VI  LVN+L   Y+A   V+GIRGGF+GF+D    P+ +T E V+ + H+ G++LG
Sbjct:   90 LLEIPNLGKTFKGAHVQNLSQMSGTTSGESIAYNKLLGHQDGIIADIVRREGLPPETKVYVRAGPRKELHFEPEKVRAAIVTCGGLCPGLNNVIRELVNSLFHLYRAQSGVYGIRGGFSGFHDAHRLPIMLTPELVDQIHHEGGTILG 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Match: A0A7S2JWY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JWY3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.940e-36
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:   70 NTQGSPTCYNRLLGPRDCIIYEHVRDQHKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTLLRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVL 435
            N   + T YN+++G +D II + VR  +    ++A++RAGPR++LHF P +VR AIVTCGGLCPGLN+V+  L N L   Y A KV GI GG+ GFYD   PP+++T E VE + HQ G+ L
Sbjct:  126 NKAKAGTPYNKVIGEKDAIIADPVRKPNGTTVSRAYIRAGPREKLHFNPREVRAAIVTCGGLCPGLNNVVRSLTNALFHLYGARKVTGIAGGYKGFYDPEYPPIDLTPEVVEFIHHQGGTFL 247
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8407.19616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8I7_9PHAE1.040e-8382.55PFK domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G165_ECTSI3.760e-5360.84Pyrophosphate-dependent phosphofructose kinase n=1... [more]
A0A835ZIU1_9STRA1.690e-5257.82Pyrophosphate-dependent phosphofructose kinase n=1... [more]
A0A6H5KDC4_9PHAE1.090e-5058.74PFK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YV15_9STRA6.090e-5056.29Pyrophosphate-dependent phosphofructose kinase n=1... [more]
A0A836C7Q7_9STRA4.880e-4755.48Pyrophosphate-dependent phosphofructokinase n=1 Ta... [more]
A0A835ZA90_9STRA3.100e-4352.70Pyrophosphate-dependent phosphofructokinase n=1 Ta... [more]
H6WB78_VAULI6.540e-4252.08Pyrophosphate-dependant phosphofructokinase n=1 Ta... [more]
K8Z818_NANGC1.280e-3849.326-phosphofructo-2-kinase / fructose-2,6-bisphospha... [more]
A0A7S2JWY3_9STRA2.940e-3650.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8407contigM-pyrifera_M_contig8407:7044..10265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.5
Seed ortholog evalue1.9e-69
Seed eggNOG ortholog2880.D7FRM0
Preferred namepfk
KEGG rclassRC00002,RC00017
KEGG koko:K00850,ko:K01412
KEGG ReactionR00756,R03236,R03237,R03238,R03239,R04779
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230
KEGG ModuleM00001,M00345
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003872,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0016020,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0020015,GO:0022622,GO:0030154,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042579,GO:0042866,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0090558,GO:0090627,GO:0097159,GO:0097367,GO:0099402,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1905392
EggNOG free text desc.6-phosphofructokinase activity
EggNOG OGsCOG0205@1,KOG2440@2759
Ec32 ortholog descriptionPhosphofructokinase
Ec32 orthologEc-12_002540.1
EC2.7.1.11,3.4.24.64
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01009,ko03019,ko03029
Exons4
Model size441
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8407.19616.1prot_M-pyrifera_M_contig8407.19616.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8407 7044..10265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.0108523-CDS-M-pyrifera_M_contig8407:7043..71601622816748.0108523-CDS-M-pyrifera_M_contig8407:7043..7160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 7044..7160 -
1692278154.6558533-CDS-M-pyrifera_M_contig8407:7043..71601692278154.6558533-CDS-M-pyrifera_M_contig8407:7043..7160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 7044..7160 -
1622816748.0241542-CDS-M-pyrifera_M_contig8407:7729..78661622816748.0241542-CDS-M-pyrifera_M_contig8407:7729..7866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 7730..7866 -
1692278154.671485-CDS-M-pyrifera_M_contig8407:7729..78661692278154.671485-CDS-M-pyrifera_M_contig8407:7729..7866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 7730..7866 -
1622816748.0413394-CDS-M-pyrifera_M_contig8407:9127..91811622816748.0413394-CDS-M-pyrifera_M_contig8407:9127..9181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 9128..9181 -
1692278154.708566-CDS-M-pyrifera_M_contig8407:9127..91811692278154.708566-CDS-M-pyrifera_M_contig8407:9127..9181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 9128..9181 -
1622816748.0548573-CDS-M-pyrifera_M_contig8407:10132..102651622816748.0548573-CDS-M-pyrifera_M_contig8407:10132..10265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 10133..10265 -
1692278154.727566-CDS-M-pyrifera_M_contig8407:10132..102651692278154.727566-CDS-M-pyrifera_M_contig8407:10132..10265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8407 10133..10265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8407.19616.1

>prot_M-pyrifera_M_contig8407.19616.1 ID=prot_M-pyrifera_M_contig8407.19616.1|Name=mRNA_M-pyrifera_M_contig8407.19616.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MCEVPNLSVRFAPSLTLNREITVNTQGSPTCYNRLLGPRDCIIYEHVRDQ
HKPPTAKAFLRAGPRQELHFTPTKVRGAIVTCGGLCPGLNSVIHHLVNTL
LRTYKAHKVFGIRGGFAGFYDETTPPMEMTSEGVELLQHQPGSVLG*
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mRNA from alignment at M-pyrifera_M_contig8407:7044..10265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8407.19616.1 ID=mRNA_M-pyrifera_M_contig8407.19616.1|Name=mRNA_M-pyrifera_M_contig8407.19616.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3222bp|location=Sequence derived from alignment at M-pyrifera_M_contig8407:7044..10265- (Macrocystis pyrifera P11B4 male)
ATGTGCGAGGTCCCCAACCTGAGCGTGAGGTTTGCGCCGTCGCTGACTCT
CAACCGGGAAATCACGGTGAACACGCAGGGAAGCCCGACGTGCTACAACA
GGCTCCTCGGACCGAGAGATTGCATCATTTATGGCGAGTACTCCTACTGA
TATAATAGTGATCTGTTAATAGACCTATTCGTGTGTTGCAGTGATAAGAG
TATGATTGTATGGGTTGCATGGTTGGTGCGATTGAGGAGTAGGGCGCCAC
GAAGAGCACAACATCACCCACTTGCGACAACGTGAAGAGGGCATCTACTA
TTAATGTTACTACTTGGAGGGAAATTAGTGATCAGAACTTAGGCCATGGA
TGGGTTAGGGTTGTAACGGAGGGGGATACATGCATGGCTTTTGGGTTCTG
ATTAATACGAGGTATCTGGTACCAGGTATGTATTACTGCAGCAGTATGTA
TTAGGATCACTGCTCCCATTTAAAGCTACAGTAGAAATAGTACTTCCTTC
AGCCGTGTTGGTTGTAGTTGTACTTGCACTTGCAGTCTATTCGCCAAGGG
ACTAGCTAATAGGGTGGGGGGGGGCGTACACATTTCTTGCTTGCCTTAGC
CATTTGACCATTGACCGCGCATCCCTTTCGAGACGGAGCACCGTTCCTGC
TCGTAATAGAAACACGTCGAACAATTGGGCGCTCACTACGTTGTTTCAAC
ATAGCACATAAAACGTTTTAGCTATTCTTATCCCCTTCCTGCTTGGCCGC
TTGTGGCCACCATCTATCTCCTAGGATAGCGATCGTTTTCTCGTTGCTAT
CTAGTGCATCAAATTCCTGCATGTCACATTTGTCACGTTCCCTCATCTCT
TGTAAGGTGGGGGGGAAATAATGTATTGAAGTCTTGGTCAGACGAGATGA
GTTGTCCTGCGCTATCATAGTGCATAATGGTGTTGTTGATGATGCTGCTG
CTAACCCCTAACCCCTTGTCACTCGCTCGTTGACGCTCGCACTGCTTGTG
TATTGTTGACAACTGGTCTGCTTCTTTATTGTTGACGGCTGAGCTGTGTG
TTTTACTGTGTGTTGACTGTGTGTATTGGCGCAGAACACGTGCGAGACCA
GCACAAGCCACCAACTGCCAAGGCATTCCTTAGAGCAGGTGAGATTGAAA
TGTCGCTGTTTTCTGCAGTTCAACTCCCGTCCTGTAGACAGGTTGAAGCT
AAAATTCGGATCTCGCAATTGTACGGTTTGCATCTTCCACGAAAATCGCC
ATCCCGATATGTTTATTTACTCTCTACTGCTTTCGAATCGTGCCCGTAGT
TTGTAGCGGGGATGTATGCTATCTAGATATCTATTTACGTATGTACTATT
AATATGTAACATTCCTGCTACCAGGCGTATGATACGTGTGGCAGATGAGC
TGATTGTTTCGTATGCACTGGTACTGGTGCTGGTACTGATGCTGGTACTG
GTACTGATGCTGATTCTGGCGGGCGCCTGGAAATCAGAGCAGCGAGCGTA
GTCCTTCGTCTCTTATGGATATGGAGTGTTGCATTGTGCCCTGTTGTGCT
ATACTGGTCTGTGTGGTATATTATACGTGGTGTATCGTATTATGGTGCAA
TGTCCGTGTCGTTTTTAAATCGCTTCGCCCGAAGTCATTTGCGATGTTGC
GATGCTGCCGTTGACATCGCCATCTTACGACAGCAGTGTTAAGTATACCT
GGCCCAAGTAATATGAAAAGTATCCTTCACTATTTTGTTTTATTTTTTCT
TGCGACACGGACGGCGAGAGGAAACCCCTGTCCACACTTACTGTATTCCT
CTACAGTAGCTTTCGTGTACCGGTTCGAGCCCGGTTCGTTTCTTCCACCT
TCCTCGGGCCTGTCTCTGACCGTGCCGTCGTCAAAGAGTGGTTTACTCCG
AGATGTAGGCACCTGAGTCTGGATTTTATCTCTCCCGACTCAGGTAGTGT
AGGAGTTGAACCCACTAAAACCTCTCAATAGTCTCCACAGCTTGACTCAG
TGCACGAGTCACCCTACGCATCTGGGCGTTGGCCCGCATGTCCTTGACAA
TTGTAAACGATTTGCCGTTGTAAACGTTTTGCTCTACTCTCGAGTCGTTA
TATGTAGTACTGTACGTGGCTGTTCTTGTTGGTGTTGTTGTCTTTGGCCG
TTGTTGGACAGCCAACCTATCGCGGAGCTTCTGTATGATATGCATGCAAG
CATACGGATACAAATATATACCAGGTATGAACATTTCCCCCGCCCTGACT
GGGCGCTGCTGTGCCATTATGTCAGTGCTACCATGCTATGAGTATGATGC
TAGTAGTTTGAACACCCTACCACTCTGTGATATATCACACTGACACTGCC
TGACATGATGTTAACGTTATGATGGTGACATATGTGATGCTGGCTGTAGG
CCCTCGACAGGAGCTCCACTTCACCCCGACCAAAGTTCGAGGAGCGATCG
TGACGTGCGGCGGACTGTGTCCAGGGCTCAACAGTGTCATTCACCACCTC
GTCAACACGCTCCTGCGTACCTACAAAGCTCACAAGGTCGGTCTGTCACA
GTACTGGGGTTTCCAACAGTAGCATGTTTAGTGCTCTTTATATACAAATT
TATTCACTATTGCGGGGGACCATAGTAAATAGGACCTACGGTACGCACAC
AAAAAGCCGTGTATTTCCCTATTTTTACTAATAATACTTGGGCCTACTTA
CTATGGCCCCCCGTATTAGTACTACCTGGTACTGTGCTGTACGAGTAGCC
ATGTCGTGTCATGACATGTGATGCCGTGTGAAGTCTGTCGTGTCATGGTG
TGAAGTAATGCTGACGTGATATGATGTGATGTTATGCCTGCTGTAGGGTT
TCTAGGTTCATGCCCTCGCCTAGTCCCACTAATTTTTCCTTGAGGATTAG
GGTTAGAGTACGTGTTGCCTTTTCTCACCGTGAAGTATGCGCTACCTTTT
CTCACCGTGAAGCCATAGAAACGTCGCCACTATTTTGAGCCGATGCTGAA
CTTGATCGATATCGTCTTGTCTTGTCTAGAGGGGACTGAGAACTTTGGGA
TTTTGGAATCGGGCGAGCATTGCTGACTACACAGTGCCTCCCCACTCCGT
GACAGGTATTCGGGATCAGGGGAGGGTTTGCAGGGTTTTACGATGAGACC
ACCCCACCGATGGAAATGACTAGCGAGGGAGTCGAGCTTCTGCAGCATCA
GCCGGGTTCCGTTCTCGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8407:7044..10265-

>mRNA_M-pyrifera_M_contig8407.19616.1 ID=mRNA_M-pyrifera_M_contig8407.19616.1|Name=mRNA_M-pyrifera_M_contig8407.19616.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig8407:7044..10265- (Macrocystis pyrifera P11B4 male)
ATGTGCGAGGTCCCCAACCTGAGCGTGAGGTTTGCGCCGTCGCTGACTCT
CAACCGGGAAATCACGGTGAACACGCAGGGAAGCCCGACGTGCTACAACA
GGCTCCTCGGACCGAGAGATTGCATCATTTATGATGTGCGAGGTCCCCAA
CCTGAGCGTGAGGTTTGCGCCGTCGCTGACTCTCAACCGGGAAATCACGG
TGAACACGCAGGGAAGCCCGACGTGCTACAACAGGCTCCTCGGACCGAGA
GATTGCATCATTTATGAACACGTGCGAGACCAGCACAAGCCACCAACTGC
CAAGGCATTCCTTAGAGCAGAACACGTGCGAGACCAGCACAAGCCACCAA
CTGCCAAGGCATTCCTTAGAGCAGGCCCTCGACAGGAGCTCCACTTCACC
CCGACCAAAGTTCGAGGAGCGATCGTGACGTGCGGCGGACTGTGTCCAGG
GCTCAACAGTGTCATTCACCACCTCGTCAACACGCTCCTGCGTACCTACA
AAGCTCACAAGGCCCTCGACAGGAGCTCCACTTCACCCCGACCAAAGTTC
GAGGAGCGATCGTGACGTGCGGCGGACTGTGTCCAGGGCTCAACAGTGTC
ATTCACCACCTCGTCAACACGCTCCTGCGTACCTACAAAGCTCACAAGGT
ATTCGGGATCAGGGGAGGGTTTGCAGGGTTTTACGATGAGACCACCCCAC
CGATGGAAATGACTAGCGAGGGAGTCGAGCTTCTGCAGCATCAGCCGGGT
TCCGTTCTCGGGTAAGTATTCGGGATCAGGGGAGGGTTTGCAGGGTTTTA
CGATGAGACCACCCCACCGATGGAAATGACTAGCGAGGGAGTCGAGCTTC
TGCAGCATCAGCCGGGTTCCGTTCTCGGGTAA
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