mRNA_M-pyrifera_M_contig84069.19615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84069.19615.1
Unique NamemRNA_M-pyrifera_M_contig84069.19615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A7S1SKJ8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SKJ8_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 1.790e-29
Identity = 57/140 (40.71%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            WYV NL++ NA  LE+VSL  WDQDDE  +  +G HA++  G   +V  LAEG+ I FN  V+ +        +  V + T +G   TAD  + T+PLG+LK+  + F PPLPP+K+++ + +  G+LNK+++ F   FW
Sbjct:  122 WYVANLEFANASTLEKVSLTEWDQDDEYEL--QGSHALVSGGNVRLVEGLAEGLDIMFNTVVERISYS-----RSSVTIRTTAGQTLTADAALVTVPLGILKRDLITFDPPLPPAKRDTIQRIGFGVLNKVVMLFPRAFW 254          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A0D6QZQ4_ARACU (SWIRM domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QZQ4_ARACU)

HSP 1 Score: 117 bits (294), Expect = 5.650e-28
Identity = 64/140 (45.71%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W++ NL+Y NA  L ++SL  WDQDD   +   GDH  +P G   IV  LAEG+PI ++  V+AVR    G     V+V    G I  ADMV+CT+PLGVLK G++ F P LP  K E+   +  GLLNK+++ F T FW
Sbjct:  434 WHLANLEYANAALLSKLSLAFWDQDDPYEM--AGDHCFLPGGNARIVQALAEGLPIFYDKTVQAVRYGSDG-----VQVVAG-GQIFQADMVLCTVPLGVLKSGSIKFEPELPQRKLEAIRRLGFGLLNKVVMLFPTAFW 565          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A830BN95_9LAMI (Lysine-specific histone demethylase 1 homolog 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BN95_9LAMI)

HSP 1 Score: 115 bits (289), Expect = 2.630e-27
Identity = 60/140 (42.86%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W++ NL+Y NA  +  +S+  WDQDD   +   GDH  +P G E +V  LAE +PI ++  V++VR    G +     V    GH   +DMV+CT+PLGVLKKG + F P LP  KK++ E +  GLLNK+ I F   FW
Sbjct:  396 WHLANLEYANATLMSNLSMAFWDQDDPYEM--GGDHCFIPGGNERLVRALAEDLPIFYDRPVESVRYGSDGVI-----VHAGGGHEYQSDMVLCTVPLGVLKKGGIEFVPELPQRKKDAIERLGFGLLNKVAILFPYDFW 528          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: S8BWJ6_9LAMI (SWIRM domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8BWJ6_9LAMI)

HSP 1 Score: 115 bits (288), Expect = 3.600e-27
Identity = 60/140 (42.86%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W+V NL+Y NA  + R+SL  WDQDD   +   GDH  +P G   +V  +AE +PI+F   V+AVR    G     V+V    G   T DMV+CT+PLGVLK G++ F P LP  K ++   +  GLLNK+ + F   FW
Sbjct:  393 WHVANLEYANASLISRLSLAFWDQDDPYDM--GGDHCFLPGGNGRLVQAMAENVPIQFEKTVQAVRYGSDG-----VQVSVVGGQTYTGDMVLCTVPLGVLKSGSIKFVPELPQRKLDAIRRLGFGLLNKVALVFPNAFW 525          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A7I3ZZ16_PHYPA (SWIRM domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I3ZZ16_PHYPA)

HSP 1 Score: 114 bits (286), Expect = 6.790e-27
Identity = 60/140 (42.86%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W+  NL+Y NA  L  +SL +WDQDD   +   GDH  +P G    +  L E +PI +   VK +R  D G     V+VET     E  +MV+CT+PLGVLKKG ++F PPLPP K ++ + +  GLLNK+++ F   FW
Sbjct:  518 WHFANLEYANAQLLTNLSLSDWDQDDPYEM--GGDHCFLPGGNVQFIEVLCEHVPILYGKTVKRIRYGDSG-----VKVETADETFE-GEMVLCTVPLGVLKKGMINFDPPLPPYKVDAIQRLGFGLLNKVVMLFPKVFW 649          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: R1C8F2_EMIHU (Amino_oxidase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C8F2_EMIHU)

HSP 1 Score: 114 bits (285), Expect = 7.100e-27
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W+  NL+Y N   L  +S R WD DDE      G H ++P G+  ++  +A G+ IR    VK V+   +G + E   V   S  I TAD+ IC+LPLGVLK GAV F PPLPP K+E+ E +  G LNK+++ F  PFW
Sbjct:  247 WHWANLEYANGTQLHSLSNRWWDADDEFDF--GGGHYLLPDGYGGLLRKVAAGLDIRLGHEVKTVKKEPRGVLVE--AVNGGSPVIFTADVAICSLPLGVLKAGAVVFEPPLPPRKQEAIERLGFGSLNKVLLGFERPFW 382          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: R1E2Z3_EMIHU (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2Z3_EMIHU)

HSP 1 Score: 114 bits (285), Expect = 9.450e-27
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W+  NL+Y N   L  +S R WD DDE      G H ++P G+  ++  +A G+ IR    VK V+   +G + E   V   S  I TAD+ IC+LPLGVLK GAV F PPLPP K+E+ E +  G LNK+++ F  PFW
Sbjct:  851 WHWANLEYANGTQLHSLSNRWWDADDEFDF--GGGHYLLPDGYGGLLRKVAAGLDIRLGHEVKTVKKEPRGVLVE--AVNGGSPVIFTADVAICSLPLGVLKAGAVVFEPPLPPRKQEAIERLGFGSLNKVLLGFERPFW 986          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A022RGK2_ERYGU (SWIRM domain-containing protein (Fragment) n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RGK2_ERYGU)

HSP 1 Score: 112 bits (280), Expect = 3.930e-26
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W++ NL+Y NA  +  +S+  WDQDD   +   GDH  +P G E ++  LAE +PI FN  V++VR    G +          G    +D+V+CT+PLGVLKKG + FSP LP  KK++ E +  GLLNK+ I F   FW
Sbjct:  352 WHLANLEYANATLMSNLSMAFWDQDDPYEM--GGDHCFIPGGNERLIRALAEDLPIFFNRPVESVRYGSDGVIIHA------GGQEYQSDVVLCTVPLGVLKKGTIEFSPELPQRKKDAIERLGFGLLNKVAILFPYDFW 483          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A3L6RQT3_PANMI (SWIRM domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6RQT3_PANMI)

HSP 1 Score: 112 bits (280), Expect = 4.080e-26
Identity = 60/140 (42.86%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W++ NL+Y NA PL  +S+  WDQDD   +   GDH  +P G    V  LA+GIPI +   V+ V+    G M  H + ++  G     DMV+CT+PLGVLKKG + F P LP  KKE+ + +  GLLNK+++ F   FW
Sbjct:  428 WHLANLEYANAAPLADLSMAFWDQDDPYEM--GGDHCFIPGGNSQFVRALADGIPIFYGQNVRRVQYGRDGVMV-HTDKQSFCG-----DMVLCTVPLGVLKKGDIKFVPELPAQKKEAIQRLGFGLLNKVVMLFPYDFW 559          
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Match: A0A5J9TU40_9POAL (SWIRM domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TU40_9POAL)

HSP 1 Score: 112 bits (279), Expect = 5.840e-26
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPLAEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGVLKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW 420
            W++ NL+Y NA  L R+SL  WDQDD   +   GDH  +P G   +V  LAE +PI +   V  +R    G     V+V  N GH+   DMV+CT+PLGVLK G + F P LP  K +S + +  GLLNK+ + F   FW
Sbjct:  345 WHLANLEYANAGFLSRLSLAYWDQDDPYDM--GGDHCFLPGGNGRLVQALAENMPIIYERTVHTIRYGGDG-----VQVVVNGGHVYEGDMVLCTIPLGVLKTGGIKFVPELPQRKLDSIKRLGFGLLNKVSMLFPHCFW 477          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84069.19615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1SKJ8_9CHLO1.790e-2940.71Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A0D6QZQ4_ARACU5.650e-2845.71SWIRM domain-containing protein n=2 Tax=Araucariac... [more]
A0A830BN95_9LAMI2.630e-2742.86Lysine-specific histone demethylase 1 homolog 1 n=... [more]
S8BWJ6_9LAMI3.600e-2742.86SWIRM domain-containing protein (Fragment) n=1 Tax... [more]
A0A7I3ZZ16_PHYPA6.790e-2742.86SWIRM domain-containing protein n=4 Tax=Physcomitr... [more]
R1C8F2_EMIHU7.100e-2743.57Amino_oxidase domain-containing protein n=1 Tax=Em... [more]
R1E2Z3_EMIHU9.450e-2743.57AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A022RGK2_ERYGU3.930e-2642.14SWIRM domain-containing protein (Fragment) n=2 Tax... [more]
A0A3L6RQT3_PANMI4.080e-2642.86SWIRM domain-containing protein n=1 Tax=Panicum mi... [more]
A0A5J9TU40_9POAL5.840e-2642.86SWIRM domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84069contigM-pyrifera_M_contig84069:400..819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score117.5
Seed ortholog evalue5.1e-24
Seed eggNOG ortholog3218.PP1S145_84V6.1
Preferred nameFLD
KEGG koko:K11450
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009791,GO:0009987,GO:0010228,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022414,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048608,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0061458,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
EggNOG free text desc.Lysine-specific histone demethylase 1 homolog
EggNOG OGs37IHR@33090,3G7FJ@35493,COG1231@1,KOG0029@2759
COG Functional cat.Q
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.978257-CDS-M-pyrifera_M_contig84069:399..8191622816747.978257-CDS-M-pyrifera_M_contig84069:399..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84069 400..819 +
1692278154.6414073-CDS-M-pyrifera_M_contig84069:399..8191692278154.6414073-CDS-M-pyrifera_M_contig84069:399..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84069 400..819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84069.19615.1prot_M-pyrifera_M_contig84069.19615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84069 400..819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84069.19615.1

>prot_M-pyrifera_M_contig84069.19615.1 ID=prot_M-pyrifera_M_contig84069.19615.1|Name=mRNA_M-pyrifera_M_contig84069.19615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
WYVHNLDYGNALPLERVSLRNWDQDDETTIFSRGDHAIMPKGFESIVSPL
AEGIPIRFNDAVKAVRVCDQGTMKEHVEVETNSGHIETADMVICTLPLGV
LKKGAVHFSPPLPPSKKESAEAMDAGLLNKIIIHFRTPFW
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mRNA from alignment at M-pyrifera_M_contig84069:400..819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84069.19615.1 ID=mRNA_M-pyrifera_M_contig84069.19615.1|Name=mRNA_M-pyrifera_M_contig84069.19615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig84069:400..819+ (Macrocystis pyrifera P11B4 male)
TGGTATGTACACAACTTGGATTATGGAAATGCTCTACCTTTGGAGAGAGT GTCTCTTCGAAATTGGGACCAAGATGACGAAACTACAATTTTCTCACGTG GTGATCACGCAATCATGCCAAAAGGCTTTGAGTCTATCGTATCTCCATTG GCTGAGGGTATTCCAATTCGTTTCAATGATGCTGTGAAAGCTGTGCGTGT TTGCGATCAAGGTACCATGAAAGAGCATGTTGAAGTGGAGACAAACTCTG GCCATATTGAAACGGCAGATATGGTAATATGCACACTTCCTCTTGGTGTG TTGAAGAAAGGAGCAGTTCACTTCTCTCCTCCATTGCCCCCATCGAAGAA AGAAAGTGCGGAAGCCATGGATGCAGGGTTGTTGAACAAAATCATTATAC ATTTTCGAACGCCGTTTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84069:400..819+

>mRNA_M-pyrifera_M_contig84069.19615.1 ID=mRNA_M-pyrifera_M_contig84069.19615.1|Name=mRNA_M-pyrifera_M_contig84069.19615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig84069:400..819+ (Macrocystis pyrifera P11B4 male)
TGGTATGTACACAACTTGGATTATGGAAATGCTCTACCTTTGGAGAGAGT
GTCTCTTCGAAATTGGGACCAAGATGACGAAACTACAATTTTCTCACGTG
GTGATCACGCAATCATGCCAAAAGGCTTTGAGTCTATCGTATCTCCATTG
GCTGAGGGTATTCCAATTCGTTTCAATGATGCTGTGAAAGCTGTGCGTGT
TTGCGATCAAGGTACCATGAAAGAGCATGTTGAAGTGGAGACAAACTCTG
GCCATATTGAAACGGCAGATATGGTAATATGCACACTTCCTCTTGGTGTG
TTGAAGAAAGGAGCAGTTCACTTCTCTCCTCCATTGCCCCCATCGAAGAA
AGAAAGTGCGGAAGCCATGGATGCAGGGTTGTTGAACAAAATCATTATAC
ATTTTCGAACGCCGTTTTGGTGGTATGTACACAACTTGGATTATGGAAAT
GCTCTACCTTTGGAGAGAGTGTCTCTTCGAAATTGGGACCAAGATGACGA
AACTACAATTTTCTCACGTGGTGATCACGCAATCATGCCAAAAGGCTTTG
AGTCTATCGTATCTCCATTGGCTGAGGGTATTCCAATTCGTTTCAATGAT
GCTGTGAAAGCTGTGCGTGTTTGCGATCAAGGTACCATGAAAGAGCATGT
TGAAGTGGAGACAAACTCTGGCCATATTGAAACGGCAGATATGGTAATAT
GCACACTTCCTCTTGGTGTGTTGAAGAAAGGAGCAGTTCACTTCTCTCCT
CCATTGCCCCCATCGAAGAAAGAAAGTGCGGAAGCCATGGATGCAGGGTT
GTTGAACAAAATCATTATACATTTTCGAACGCCGTTTTGG
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