mRNA_M-pyrifera_M_contig84061.19612.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84061.19612.1
Unique NamemRNA_M-pyrifera_M_contig84061.19612.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84061.19612.1 vs. uniprot
Match: A0A2E2BZM2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2BZM2_9PLAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.860e-16
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    1 VADDRTQRERNDAIIEAFNANGGRAVWHPIAASPEDR-TEVMVWKHVGTVPRESRLTPLFQLRGLSKLLVYNFYTRDSDLAGIDQMEDLPGLLIRGQITDEGLRHL 315
            + + +  R RND  + A+N +GG A WH      +   +E+MV +   T  R S   PLFQ+RG+SK++++     D++L GI +M+DLP LLI G+ITD+GLRHL
Sbjct:   20 IVEAQEHRVRNDEYLAAYNDSGGWAYWHDSKRGQDPHGSELMVRRSNRTELRVST-KPLFQMRGVSKVILHGVDFTDAELDGISEMKDLPSLLINGKITDDGLRHL 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84061.19612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E2BZM2_9PLAN1.860e-1642.45Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84061contigM-pyrifera_M_contig84061:153..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.8711715-CDS-M-pyrifera_M_contig84061:152..7101622816747.8711715-CDS-M-pyrifera_M_contig84061:152..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84061 153..710 +
1692278154.606056-CDS-M-pyrifera_M_contig84061:152..7101692278154.606056-CDS-M-pyrifera_M_contig84061:152..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84061 153..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84061.19612.1prot_M-pyrifera_M_contig84061.19612.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84061 153..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84061.19612.1

>prot_M-pyrifera_M_contig84061.19612.1 ID=prot_M-pyrifera_M_contig84061.19612.1|Name=mRNA_M-pyrifera_M_contig84061.19612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
VADDRTQRERNDAIIEAFNANGGRAVWHPIAASPEDRTEVMVWKHVGTVP
RESRLTPLFQLRGLSKLLVYNFYTRDSDLAGIDQMEDLPGLLIRGQITDE
GLRHLSDAKSLRKLWIYGTKVRGHGLRHLQHLDQLELLWIDGELSDEGIA
ELKRMTHLKHLHVDHAGYEVGEILEKSLPDTEVVY*
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mRNA from alignment at M-pyrifera_M_contig84061:153..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84061.19612.1 ID=mRNA_M-pyrifera_M_contig84061.19612.1|Name=mRNA_M-pyrifera_M_contig84061.19612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig84061:153..710+ (Macrocystis pyrifera P11B4 male)
GTTGCCGACGATCGTACGCAACGCGAGCGGAACGATGCAATCATCGAGGC
TTTCAACGCCAATGGTGGTCGCGCTGTTTGGCATCCGATTGCAGCATCGC
CCGAGGATCGAACCGAGGTTATGGTTTGGAAGCACGTCGGTACAGTGCCA
CGGGAATCACGGTTGACCCCGCTGTTTCAATTGCGGGGCCTTTCCAAGCT
ACTGGTATACAACTTCTACACCCGGGACTCGGATCTCGCCGGTATCGACC
AAATGGAGGACTTACCGGGACTGCTGATTCGAGGTCAAATCACTGACGAA
GGCTTGCGTCATCTTTCCGATGCAAAATCGCTACGAAAGCTATGGATTTA
CGGCACTAAAGTTCGTGGACACGGATTGAGACACCTGCAGCATCTAGACC
AACTTGAACTTCTTTGGATTGACGGAGAACTCAGCGACGAAGGAATTGCG
GAGCTCAAGCGAATGACCCACCTCAAGCACTTGCACGTCGATCATGCGGG
GTACGAGGTCGGAGAGATTTTGGAAAAATCGCTACCAGATACGGAAGTGG
TATACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84061:153..710+

>mRNA_M-pyrifera_M_contig84061.19612.1 ID=mRNA_M-pyrifera_M_contig84061.19612.1|Name=mRNA_M-pyrifera_M_contig84061.19612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig84061:153..710+ (Macrocystis pyrifera P11B4 male)
GTTGCCGACGATCGTACGCAACGCGAGCGGAACGATGCAATCATCGAGGC
TTTCAACGCCAATGGTGGTCGCGCTGTTTGGCATCCGATTGCAGCATCGC
CCGAGGATCGAACCGAGGTTATGGTTTGGAAGCACGTCGGTACAGTGCCA
CGGGAATCACGGTTGACCCCGCTGTTTCAATTGCGGGGCCTTTCCAAGCT
ACTGGTATACAACTTCTACACCCGGGACTCGGATCTCGCCGGTATCGACC
AAATGGAGGACTTACCGGGACTGCTGATTCGAGGTCAAATCACTGACGAA
GGCTTGCGTCATCTTTCCGATGCAAAATCGCTACGAAAGCTATGGATTTA
CGGCACTAAAGTTCGTGGACACGGATTGAGACACCTGCAGCATCTAGACC
AACTTGAACTTCTTTGGATTGACGGAGAACTCAGCGACGAAGGAATTGCG
GAGCTCAAGCGAATGACCCACCTCAAGCACTTGCACGTCGATCATGCGGG
GTACGAGGTCGGAGAGATTTTGGAAAAATCGCTACCAGATACGGAAGTGG
TATACTAGGTTGCCGACGATCGTACGCAACGCGAGCGGAACGATGCAATC
ATCGAGGCTTTCAACGCCAATGGTGGTCGCGCTGTTTGGCATCCGATTGC
AGCATCGCCCGAGGATCGAACCGAGGTTATGGTTTGGAAGCACGTCGGTA
CAGTGCCACGGGAATCACGGTTGACCCCGCTGTTTCAATTGCGGGGCCTT
TCCAAGCTACTGGTATACAACTTCTACACCCGGGACTCGGATCTCGCCGG
TATCGACCAAATGGAGGACTTACCGGGACTGCTGATTCGAGGTCAAATCA
CTGACGAAGGCTTGCGTCATCTTTCCGATGCAAAATCGCTACGAAAGCTA
TGGATTTACGGCACTAAAGTTCGTGGACACGGATTGAGACACCTGCAGCA
TCTAGACCAACTTGAACTTCTTTGGATTGACGGAGAACTCAGCGACGAAG
GAATTGCGGAGCTCAAGCGAATGACCCACCTCAAGCACTTGCACGTCGAT
CATGCGGGGTACGAGGTCGGAGAGATTTTGGAAAAATCGCTACCAGATAC
GGAAGTGGTATACTAG
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