mRNA_M-pyrifera_M_contig84057.19611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84057.19611.1
Unique NamemRNA_M-pyrifera_M_contig84057.19611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A7S1SM16_9CHLO (ER membrane protein complex subunit 6 n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SM16_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 1.840e-12
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   16 LAPAGLPAGASVEGEEQLVVDPQSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKL-KRALNLDLLGLVRLGLLDEVVPFVFFWSFAYTIVHVF 366
            + PA  P G+  + +++ + + Q+   N  V  ++R +  ++GGVVTGI+GVTG++GIL  +V Q   +G++ LK G    K  L    + L +      ++ F+ FW+FAY+IV+VF
Sbjct:    1 MMPAAPPDGSLEQPKDRELFNMQNHMHNKQVVYFMRVYAAIVGGVVTGIIGVTGFFGILHLVVWQSLFAGLLLLKKGVNTGKYFLRTSEMALDQAFSSTTLLTFILFWTFAYSIVYVF 118          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A0D6R5G7_ARACU (ER membrane protein complex subunit 6 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R5G7_ARACU)

HSP 1 Score: 64.7 bits (156), Expect = 6.200e-11
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   73 VDPQSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRL-GLLDEVVPFVFFWSFAYTIVHVF 366
            + P++L+ N  V  Y R FL ++GGVV GILG+TG+ G + Y V+    S  V  KA   +      D    V L G+   ++ FV FW+FAY IVH+F
Sbjct:   25 ISPENLQNNMRVIYYSRTFLSIIGGVVAGILGLTGWKGFIFYFVMMALTSLGVIAKAKFDIHE--YFDSWNRVILDGISGGLMSFVLFWTFAYDIVHIF 121          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A388L316_CHABU (ER membrane protein complex subunit 6 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L316_CHABU)

HSP 1 Score: 63.2 bits (152), Expect = 2.040e-10
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   85 SLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKR------ALNLDLLGLVRLGLLDEVVPFVFFWSFAYTIVHVF 366
            +++ N  +  Y R FL ++GG VTGILG+TG  GIL Y +    A+  +F+K G  +        AL LD       G+   V+ F  FW+  Y IVH+F
Sbjct:   21 NIQHNQRIVYYSRMFLSIVGGCVTGILGLTGIGGILCYFITMAIATLALFVKTGFSVDAYFVSWYALGLD-------GIFSGVMSFFLFWTLVYDIVHIF 113          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A9P1K8_PICSI (ER membrane protein complex subunit 6 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P1K8_PICSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.540e-10
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1
Query:   28 GLPAGASVEG-----EEQLVVDPQSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRL-GLLDEVVPFVFFWSFAYTIVHVF 366
            G PA AS +       E +    ++L+ N  V  Y R FL ++GGVV GILG+TG  G + Y ++    S  V  KA   +      D    V L G+   ++ FV FW+FAY IVH+F
Sbjct:    6 GSPASASEKKLSNFENELMAFSAENLQNNMKVTFYSRTFLSIIGGVVAGILGLTGLKGFILYFIIMAVGSLGVITKAKFDIHE--YFDSWNRVILDGITGGLMSFVLFWTFAYDIVHIF 122          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A3S3Q5G7_9MAGN (ER membrane protein complex subunit 6 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3Q5G7_9MAGN)

HSP 1 Score: 62.0 bits (149), Expect = 6.720e-10
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   70 VVDPQSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRL-GLLDEVVPFVFFWSFAYTIVHVF 366
            + + ++L+ N  V  Y R FL ++GGVV GILG+TG  G + Y ++    S  + L A  K       D    + L G L  ++ FV FW+FAY I+H+F
Sbjct:   23 IFNAENLQTNMKVIYYSRTFLSIIGGVVAGILGLTGLMGFIFYFLIMAITS--IGLAAKAKFSVHSYFDCWNRIILDGFLSGLMSFVLFWTFAYDIIHIF 120          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A6P4QDS3_GOSAR (ER membrane protein complex subunit 6 n=17 Tax=Gossypium TaxID=3633 RepID=A0A6P4QDS3_GOSAR)

HSP 1 Score: 60.8 bits (146), Expect = 1.880e-9
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   82 QSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWG-ILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRL-GLLDEVVPFVFFWSFAYTIVHVF 366
            ++L+ N  V  Y R FL ++GG ++GILG+TG  G IL +IV+ + + G++   A  K       D    + L G L  ++ FV FW+FAY IVH+F
Sbjct:   27 ENLQNNMKVVYYSRTFLSIIGGAISGILGLTGCMGFILYFIVMAITSIGLI---AKAKFSLHSYFDCWNRIILDGFLGGLMSFVLFWTFAYDIVHIF 120          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: UPI0001CBB68A (ER membrane protein complex subunit 6-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB68A)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   85 SLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRLGLLDEVVPFVFFWSFAYTIVHVF 366
            SLR N  V  Y R  +  L G   GILG+TG +G + Y++  LC S ++ +KAG   K+   +    L+  G +  +  ++ FW+F Y +VHV+
Sbjct:   18 SLRGNRSVMEYCRTSMSALSGATAGILGLTGLYGFIFYLITSLCLSIMLVVKAGSGWKKYF-ISRTPLLTNGFMGGLFTYILFWTFLYGMVHVY 110          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: UPI0005D370DB (ER membrane protein complex subunit 6 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D370DB)

HSP 1 Score: 58.2 bits (139), Expect = 2.120e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   82 QSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRLGLLDEVVPFVFFWSFAYTIVHVF 366
            ++L+ N  V  Y R FL ++GGV+ GILG+TG  G + Y ++   AS  +  KA   +    +     +V   +L  ++ FV FW+FAY IVH+F
Sbjct:   28 ENLQSNMKVIYYSRTFLSIIGGVIAGILGLTGLKGFVLYFLIMALASLGLAAKARFSIHEYFD-SWNRVVLDAVLGGLMSFVLFWTFAYDIVHIF 121          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A068U343_COFCA (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A068U343_COFCA)

HSP 1 Score: 58.5 bits (140), Expect = 3.230e-8
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   82 QSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKR---ALNLDLLGLVRLGLLDEVVPFVFFWSFAYTIVHVF 366
            ++++ N  V  Y R F+ ++GGVV GILG+TG  G + Y ++    S  +  KAG  +     + N  LL     G    ++ FV FW+FAY IVH+F
Sbjct:   67 ENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSAGLAAKAGFSIHSYFDSWNKILLD----GFFGGLMSFVLFWTFAYDIVHIF 160          
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Match: A0A6P6SSX2_COFAR (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SSX2_COFAR)

HSP 1 Score: 57.4 bits (137), Expect = 4.110e-8
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   82 QSLRENYGVAMYLRAFLFVLGGVVTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKR---ALNLDLLGLVRLGLLDEVVPFVFFWSFAYTIVHVF 366
            ++++ N  V  Y R F+ ++GGVV GILG+TG  G + Y ++    S  +  KAG  +     + N  LL     G    ++ FV FW+FAY IVH+F
Sbjct:   27 ENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSVGLAAKAGFSIHSYFDSWNKILLD----GFFGGLMSFVLFWTFAYDIVHIF 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84057.19611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1SM16_9CHLO1.840e-1234.75ER membrane protein complex subunit 6 n=1 Tax=Tetr... [more]
A0A0D6R5G7_ARACU6.200e-1140.40ER membrane protein complex subunit 6 n=2 Tax=Arau... [more]
A0A388L316_CHABU2.040e-1037.00ER membrane protein complex subunit 6 n=1 Tax=Char... [more]
A9P1K8_PICSI3.540e-1036.97ER membrane protein complex subunit 6 n=1 Tax=Pice... [more]
A0A3S3Q5G7_9MAGN6.720e-1037.00ER membrane protein complex subunit 6 n=1 Tax=Cinn... [more]
A0A6P4QDS3_GOSAR1.880e-939.18ER membrane protein complex subunit 6 n=17 Tax=Gos... [more]
UPI0001CBB68A2.980e-935.11ER membrane protein complex subunit 6-like n=1 Tax... [more]
UPI0005D370DB2.120e-836.84ER membrane protein complex subunit 6 n=1 Tax=Ambo... [more]
A0A068U343_COFCA3.230e-836.73ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A0A6P6SSX2_COFAR4.110e-836.73ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84057contigM-pyrifera_M_contig84057:8..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog88036.EFJ28208
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ER membrane protein complex subunit
EggNOG OGs37VPK@33090,3GJST@35493,KOG4455@1,KOG4455@2759
Ec32 ortholog descriptionER membrane protein complex subunit 6
Ec32 orthologEc-23_001080.1
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.839299-CDS-M-pyrifera_M_contig84057:7..3761622816747.839299-CDS-M-pyrifera_M_contig84057:7..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84057 8..376 +
1692278154.5906956-CDS-M-pyrifera_M_contig84057:7..3761692278154.5906956-CDS-M-pyrifera_M_contig84057:7..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84057 8..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84057.19611.1prot_M-pyrifera_M_contig84057.19611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84057 8..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84057.19611.1

>prot_M-pyrifera_M_contig84057.19611.1 ID=prot_M-pyrifera_M_contig84057.19611.1|Name=mRNA_M-pyrifera_M_contig84057.19611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MGADPLAPAGLPAGASVEGEEQLVVDPQSLRENYGVAMYLRAFLFVLGGV
VTGILGVTGYWGILAYIVLQLCASGVVFLKAGGKLKRALNLDLLGLVRLG
LLDEVVPFVFFWSFAYTIVHVF*
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mRNA from alignment at M-pyrifera_M_contig84057:8..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84057.19611.1 ID=mRNA_M-pyrifera_M_contig84057.19611.1|Name=mRNA_M-pyrifera_M_contig84057.19611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig84057:8..376+ (Macrocystis pyrifera P11B4 male)
ATGGGTGCTGATCCGCTTGCTCCAGCTGGGTTGCCAGCAGGAGCATCCGT GGAAGGGGAAGAACAGTTGGTGGTGGATCCACAATCGTTGAGAGAAAACT ATGGTGTTGCCATGTACCTCCGCGCGTTCTTGTTTGTTCTTGGTGGAGTT GTAACTGGGATTCTAGGAGTTACTGGGTATTGGGGCATCCTTGCCTACAT AGTCTTGCAACTTTGTGCCTCAGGGGTAGTGTTTTTGAAGGCCGGGGGGA AGCTGAAGCGTGCATTGAATTTGGACTTGCTTGGTTTGGTTCGGCTTGGC CTCTTAGATGAGGTTGTTCCGTTCGTTTTCTTCTGGTCCTTTGCTTATAC CATTGTGCATGTCTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84057:8..376+

>mRNA_M-pyrifera_M_contig84057.19611.1 ID=mRNA_M-pyrifera_M_contig84057.19611.1|Name=mRNA_M-pyrifera_M_contig84057.19611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig84057:8..376+ (Macrocystis pyrifera P11B4 male)
ATGGGTGCTGATCCGCTTGCTCCAGCTGGGTTGCCAGCAGGAGCATCCGT
GGAAGGGGAAGAACAGTTGGTGGTGGATCCACAATCGTTGAGAGAAAACT
ATGGTGTTGCCATGTACCTCCGCGCGTTCTTGTTTGTTCTTGGTGGAGTT
GTAACTGGGATTCTAGGAGTTACTGGGTATTGGGGCATCCTTGCCTACAT
AGTCTTGCAACTTTGTGCCTCAGGGGTAGTGTTTTTGAAGGCCGGGGGGA
AGCTGAAGCGTGCATTGAATTTGGACTTGCTTGGTTTGGTTCGGCTTGGC
CTCTTAGATGAGGTTGTTCCGTTCGTTTTCTTCTGGTCCTTTGCTTATAC
CATTGTGCATGTCTTCTAGATGGGTGCTGATCCGCTTGCTCCAGCTGGGT
TGCCAGCAGGAGCATCCGTGGAAGGGGAAGAACAGTTGGTGGTGGATCCA
CAATCGTTGAGAGAAAACTATGGTGTTGCCATGTACCTCCGCGCGTTCTT
GTTTGTTCTTGGTGGAGTTGTAACTGGGATTCTAGGAGTTACTGGGTATT
GGGGCATCCTTGCCTACATAGTCTTGCAACTTTGTGCCTCAGGGGTAGTG
TTTTTGAAGGCCGGGGGGAAGCTGAAGCGTGCATTGAATTTGGACTTGCT
TGGTTTGGTTCGGCTTGGCCTCTTAGATGAGGTTGTTCCGTTCGTTTTCT
TCTGGTCCTTTGCTTATACCATTGTGCATGTCTTCTAG
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