mRNA_M-pyrifera_M_contig84050.19610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84050.19610.1
Unique NamemRNA_M-pyrifera_M_contig84050.19610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84050.19610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84050contigM-pyrifera_M_contig84050:108..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.6
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog1278073.MYSTI_04774
KEGG koko:K11891
KEGG TC3.A.23.1
KEGG Pathwayko02025,ko03070,map02025,map03070
KEGG ModuleM00334
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein conserved in bacteria
EggNOG OGs1MV3D@1224,2WM2G@28221,2YUGS@29,42PG2@68525,COG3523@1,COG3523@2
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.804981-CDS-M-pyrifera_M_contig84050:107..8151622816747.804981-CDS-M-pyrifera_M_contig84050:107..815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84050 108..815 -
1692278154.5624194-CDS-M-pyrifera_M_contig84050:107..8151692278154.5624194-CDS-M-pyrifera_M_contig84050:107..815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84050 108..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84050.19610.1prot_M-pyrifera_M_contig84050.19610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84050 108..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84050.19610.1

>prot_M-pyrifera_M_contig84050.19610.1 ID=prot_M-pyrifera_M_contig84050.19610.1|Name=mRNA_M-pyrifera_M_contig84050.19610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=236bp
QGLLSINDLFNKNDFNQNEDWLLELFTKPIQLQWQQLQDTYWQETARVWS
EEIIDWASSEIYPYYPFNPHGKDLPLNRFKQFMHPKSGKLAEFMQSYITP
FQQQTNRALAIKSPLLNGELTKLNHLTKIGKLFWSTESDLTLGFSLYPEP
HSKINHFSIQYANQHLDYRNGLQEWNAWQWPQKAGHIIDASLEAHSEAKN
LLYMREIGEWSLFRLLGRASRVVSINSHVCRVTWPL
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mRNA from alignment at M-pyrifera_M_contig84050:108..815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84050.19610.1 ID=mRNA_M-pyrifera_M_contig84050.19610.1|Name=mRNA_M-pyrifera_M_contig84050.19610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig84050:108..815- (Macrocystis pyrifera P11B4 male)
CAGGGCTTGCTAAGTATTAATGACTTGTTTAATAAAAATGACTTTAACCA
AAATGAGGATTGGCTTCTTGAATTATTCACCAAGCCCATACAACTACAGT
GGCAGCAACTGCAAGACACATACTGGCAAGAAACCGCACGTGTGTGGTCT
GAAGAAATTATTGATTGGGCCAGCTCGGAAATTTATCCCTATTACCCTTT
CAATCCGCACGGGAAAGATTTACCCCTTAATCGTTTTAAACAATTCATGC
ATCCTAAATCAGGGAAGCTTGCTGAGTTTATGCAGTCGTACATAACACCT
TTCCAACAACAAACCAACCGTGCGCTTGCTATAAAATCGCCTTTGCTGAA
CGGTGAGTTGACAAAGCTCAATCACCTCACCAAAATTGGCAAGCTATTTT
GGTCAACAGAGTCTGATCTAACCCTAGGGTTTAGCCTTTATCCAGAACCT
CATTCTAAAATAAATCATTTCTCGATCCAATATGCTAATCAACACTTAGA
TTATCGTAATGGATTACAAGAATGGAATGCGTGGCAATGGCCACAAAAAG
CAGGTCATATTATAGATGCTAGCCTTGAAGCTCACAGTGAAGCAAAAAAT
CTGCTCTATATGCGCGAAATAGGCGAGTGGAGCCTCTTTCGCCTGCTTGG
TCGTGCTAGTAGAGTCGTTAGCATAAATTCACACGTGTGCCGCGTCACAT
GGCCATTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84050:108..815-

>mRNA_M-pyrifera_M_contig84050.19610.1 ID=mRNA_M-pyrifera_M_contig84050.19610.1|Name=mRNA_M-pyrifera_M_contig84050.19610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1416bp|location=Sequence derived from alignment at M-pyrifera_M_contig84050:108..815- (Macrocystis pyrifera P11B4 male)
CAGGGCTTGCTAAGTATTAATGACTTGTTTAATAAAAATGACTTTAACCA
AAATGAGGATTGGCTTCTTGAATTATTCACCAAGCCCATACAACTACAGT
GGCAGCAACTGCAAGACACATACTGGCAAGAAACCGCACGTGTGTGGTCT
GAAGAAATTATTGATTGGGCCAGCTCGGAAATTTATCCCTATTACCCTTT
CAATCCGCACGGGAAAGATTTACCCCTTAATCGTTTTAAACAATTCATGC
ATCCTAAATCAGGGAAGCTTGCTGAGTTTATGCAGTCGTACATAACACCT
TTCCAACAACAAACCAACCGTGCGCTTGCTATAAAATCGCCTTTGCTGAA
CGGTGAGTTGACAAAGCTCAATCACCTCACCAAAATTGGCAAGCTATTTT
GGTCAACAGAGTCTGATCTAACCCTAGGGTTTAGCCTTTATCCAGAACCT
CATTCTAAAATAAATCATTTCTCGATCCAATATGCTAATCAACACTTAGA
TTATCGTAATGGATTACAAGAATGGAATGCGTGGCAATGGCCACAAAAAG
CAGGTCATATTATAGATGCTAGCCTTGAAGCTCACAGTGAAGCAAAAAAT
CTGCTCTATATGCGCGAAATAGGCGAGTGGAGCCTCTTTCGCCTGCTTGG
TCGTGCTAGTAGAGTCGTTAGCATAAATTCACACGTGTGCCGCGTCACAT
GGCCATTACAGGGCTTGCTAAGTATTAATGACTTGTTTAATAAAAATGAC
TTTAACCAAAATGAGGATTGGCTTCTTGAATTATTCACCAAGCCCATACA
ACTACAGTGGCAGCAACTGCAAGACACATACTGGCAAGAAACCGCACGTG
TGTGGTCTGAAGAAATTATTGATTGGGCCAGCTCGGAAATTTATCCCTAT
TACCCTTTCAATCCGCACGGGAAAGATTTACCCCTTAATCGTTTTAAACA
ATTCATGCATCCTAAATCAGGGAAGCTTGCTGAGTTTATGCAGTCGTACA
TAACACCTTTCCAACAACAAACCAACCGTGCGCTTGCTATAAAATCGCCT
TTGCTGAACGGTGAGTTGACAAAGCTCAATCACCTCACCAAAATTGGCAA
GCTATTTTGGTCAACAGAGTCTGATCTAACCCTAGGGTTTAGCCTTTATC
CAGAACCTCATTCTAAAATAAATCATTTCTCGATCCAATATGCTAATCAA
CACTTAGATTATCGTAATGGATTACAAGAATGGAATGCGTGGCAATGGCC
ACAAAAAGCAGGTCATATTATAGATGCTAGCCTTGAAGCTCACAGTGAAG
CAAAAAATCTGCTCTATATGCGCGAAATAGGCGAGTGGAGCCTCTTTCGC
CTGCTTGGTCGTGCTAGTAGAGTCGTTAGCATAAATTCACACGTGTGCCG
CGTCACATGGCCATTA
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