mRNA_M-pyrifera_M_contig84042.19608.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84042.19608.1
Unique NamemRNA_M-pyrifera_M_contig84042.19608.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A6H5IUI4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IUI4_9HYME)

HSP 1 Score: 60.1 bits (144), Expect = 6.800e-9
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            + A D+KG T LH A  N NE +I  LL +DADPN+ D+ GSTPLH+
Sbjct:  237 INARDNKGNTPLHSAMRNSNEKMIELLLRNDADPNIVDVEGSTPLHI 283          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A6H5I5Q9_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I5Q9_9HYME)

HSP 1 Score: 57.8 bits (138), Expect = 4.390e-8
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            + A D  GRT LH+A + DN+ L   LL  +ADPNV DL+GSTPLH+
Sbjct:  654 IDAQDKLGRTPLHYALARDNKKLAEMLLRRNADPNVADLDGSTPLHI 700          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A6H5J5W4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J5W4_9HYME)

HSP 1 Score: 57.4 bits (137), Expect = 6.020e-8
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            +   D+KG T LHFA SN+  ++  FLLE+ ADPN ++  GSTPLHL
Sbjct:  292 INTRDNKGNTPLHFAVSNNRPEVTKFLLEYGADPNASNQEGSTPLHL 338          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: UPI0006C97472 (ankyrin-3-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C97472)

HSP 1 Score: 55.8 bits (133), Expect = 2.080e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   70 AADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            A D  GRT LH+A + DN+ L   LL  +ADPNV DL+GSTPLH+
Sbjct:  471 AQDKLGRTPLHYALARDNKKLAEMLLIRNADPNVADLDGSTPLHI 515          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A6H5IYG2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IYG2_9HYME)

HSP 1 Score: 55.5 bits (132), Expect = 2.830e-7
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            V A D+KGRT LH A   +N D++ ++L+  ADPN+TD  G TPLH+
Sbjct:  228 VDARDNKGRTPLHLALERENNDVVKYVLKRGADPNLTDEEGFTPLHV 274          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A6H5J531_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J531_9HYME)

HSP 1 Score: 55.5 bits (132), Expect = 2.850e-7
Identity = 28/46 (60.87%), Postives = 29/46 (63.04%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLH 201
            V A D KGRT LH A S    DL A LL   ADPN+ DL GSTPLH
Sbjct:  290 VNAQDKKGRTPLHLALSRGYNDLAALLLISGADPNLADLEGSTPLH 335          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A226D2W8_FOLCA (Transient receptor potential channel pyrexia n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226D2W8_FOLCA)

HSP 1 Score: 53.9 bits (128), Expect = 1.010e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLL-EHDADPNVTDLNGSTPLHL 204
            V   D+KGRT+LH+AA++   DLIA LL + +ADPN+ D  G TPLH+
Sbjct:  111 VNLRDTKGRTALHYAAASRRPDLIAKLLNDFEADPNIVDAEGCTPLHI 158          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: A0A6P6XNI3_DERPT (uncharacterized protein LOC113789128 n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6XNI3_DERPT)

HSP 1 Score: 52.8 bits (125), Expect = 2.610e-6
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   85 GRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            G T LH+A+ N ++D++  LLEH A+PNV D NGS+PLHL
Sbjct:   52 GFTCLHYASLNGHKDIVRILLEHGANPNVVDHNGSSPLHL 91          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: UPI0006C94860 (ankyrin-3-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C94860)

HSP 1 Score: 52.0 bits (123), Expect = 4.800e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   64 VRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            + A D+ GRT+LH A  ND E++  FLL+ DA+PN+ +  G TPLH+
Sbjct:   61 IDARDNFGRTALHLAVYNDLEEITEFLLDRDANPNLANDKGETPLHV 107          
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Match: UPI0018A08841 (ankyrin repeat domain-containing protein 22 n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI0018A08841)

HSP 1 Score: 48.9 bits (115), Expect = 4.960e-6
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   61 NVRAADSKGRTSLHFAASNDNEDLIAFLLEHDADPNVTDLNGSTPLHL 204
            NV A D KG T+LH+     ++ L+  LLE +ADPN+ + +G TPL +
Sbjct:   10 NVDAVDYKGNTALHYVCQRKSQRLVPLLLERNADPNIQNYDGETPLDI 57          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84042.19608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5IUI4_9HYME6.800e-955.32Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5I5Q9_9HYME4.390e-855.32Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5J5W4_9HYME6.020e-853.19Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI0006C974722.080e-757.78ankyrin-3-like n=1 Tax=Trichogramma pretiosum TaxI... [more]
A0A6H5IYG2_9HYME2.830e-751.06Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5J531_9HYME2.850e-760.87Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A226D2W8_FOLCA1.010e-654.17Transient receptor potential channel pyrexia n=1 T... [more]
A0A6P6XNI3_DERPT2.610e-657.50uncharacterized protein LOC113789128 n=1 Tax=Derma... [more]
UPI0006C948604.800e-648.94ankyrin-3-like n=1 Tax=Trichogramma pretiosum TaxI... [more]
UPI0018A088414.960e-643.75ankyrin repeat domain-containing protein 22 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84042contigM-pyrifera_M_contig84042:637..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.744921-CDS-M-pyrifera_M_contig84042:636..8431622816747.744921-CDS-M-pyrifera_M_contig84042:636..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84042 637..843 -
1692278154.5322337-CDS-M-pyrifera_M_contig84042:636..8431692278154.5322337-CDS-M-pyrifera_M_contig84042:636..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84042 637..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84042.19608.1prot_M-pyrifera_M_contig84042.19608.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84042 637..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84042.19608.1

>prot_M-pyrifera_M_contig84042.19608.1 ID=prot_M-pyrifera_M_contig84042.19608.1|Name=mRNA_M-pyrifera_M_contig84042.19608.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MARNPTYAACTDTFPATGRANVRAADSKGRTSLHFAASNDNEDLIAFLLE
HDADPNVTDLNGSTPLHL*
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mRNA from alignment at M-pyrifera_M_contig84042:637..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84042.19608.1 ID=mRNA_M-pyrifera_M_contig84042.19608.1|Name=mRNA_M-pyrifera_M_contig84042.19608.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig84042:637..843- (Macrocystis pyrifera P11B4 male)
ATGGCTCGCAACCCAACTTATGCAGCGTGCACTGACACCTTCCCGGCTAC AGGGAGGGCAAACGTGAGGGCGGCAGACTCCAAAGGCCGAACGAGCCTCC ACTTCGCTGCAAGCAACGACAATGAGGACCTCATTGCTTTCCTGCTGGAG CATGACGCAGACCCCAACGTGACAGACCTCAACGGCAGCACCCCACTCCA CTTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84042:637..843-

>mRNA_M-pyrifera_M_contig84042.19608.1 ID=mRNA_M-pyrifera_M_contig84042.19608.1|Name=mRNA_M-pyrifera_M_contig84042.19608.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig84042:637..843- (Macrocystis pyrifera P11B4 male)
ATGGCTCGCAACCCAACTTATGCAGCGTGCACTGACACCTTCCCGGCTAC
AGGGAGGGCAAACGTGAGGGCGGCAGACTCCAAAGGCCGAACGAGCCTCC
ACTTCGCTGCAAGCAACGACAATGAGGACCTCATTGCTTTCCTGCTGGAG
CATGACGCAGACCCCAACGTGACAGACCTCAACGGCAGCACCCCACTCCA
CTTGTAAATGGCTCGCAACCCAACTTATGCAGCGTGCACTGACACCTTCC
CGGCTACAGGGAGGGCAAACGTGAGGGCGGCAGACTCCAAAGGCCGAACG
AGCCTCCACTTCGCTGCAAGCAACGACAATGAGGACCTCATTGCTTTCCT
GCTGGAGCATGACGCAGACCCCAACGTGACAGACCTCAACGGCAGCACCC
CACTCCACTTGTAA
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