mRNA_M-pyrifera_M_contig8404.19607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8404.19607.1
Unique NamemRNA_M-pyrifera_M_contig8404.19607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8404.19607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8404contigM-pyrifera_M_contig8404:5103..6594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8404.19607.1prot_M-pyrifera_M_contig8404.19607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8404 5103..6579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.6937628-CDS-M-pyrifera_M_contig8404:5102..53481622816747.6937628-CDS-M-pyrifera_M_contig8404:5102..5348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8404 5103..5348 -
1692278154.485993-CDS-M-pyrifera_M_contig8404:5102..53481692278154.485993-CDS-M-pyrifera_M_contig8404:5102..5348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8404 5103..5348 -
1622816747.7042937-CDS-M-pyrifera_M_contig8404:6543..65791622816747.7042937-CDS-M-pyrifera_M_contig8404:6543..6579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8404 6544..6579 -
1692278154.5072467-CDS-M-pyrifera_M_contig8404:6543..65791692278154.5072467-CDS-M-pyrifera_M_contig8404:6543..6579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8404 6544..6579 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.716557-UTR-M-pyrifera_M_contig8404:6579..65941622816747.716557-UTR-M-pyrifera_M_contig8404:6579..6594Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8404 6580..6594 -
1692278154.5209098-UTR-M-pyrifera_M_contig8404:6579..65941692278154.5209098-UTR-M-pyrifera_M_contig8404:6579..6594Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8404 6580..6594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8404.19607.1

>prot_M-pyrifera_M_contig8404.19607.1 ID=prot_M-pyrifera_M_contig8404.19607.1|Name=mRNA_M-pyrifera_M_contig8404.19607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MRRGGDARGHQKGSSASDSKPGQADLTNGPTTLKQTPLLGKKSTPSRRPR
ELSSSDAATTPRSGSKSSVSAPGSSTTPSRSPHDGSTDVITSAR
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mRNA from alignment at M-pyrifera_M_contig8404:5103..6594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8404.19607.1 ID=mRNA_M-pyrifera_M_contig8404.19607.1|Name=mRNA_M-pyrifera_M_contig8404.19607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1492bp|location=Sequence derived from alignment at M-pyrifera_M_contig8404:5103..6594- (Macrocystis pyrifera P11B4 male)
GAGTTATTGACGAATATGAGACGTGGCGGGGATGCACGCGGGCATCAGAA
GGTACCGTGTGATTCGTATATAGCTCGCGACATCCTGCTTCTCCCGCAAT
GATTTATGACGTGTAAATATACTTCGTATGAAGAACAGAACAAGGGAAGT
TCACTTATAATACGCAGGAAGCTGTTTCTTCCGACCGGGTATCTTCTATT
TTTTTTTACTCCGACGGTACGCGCCAGAGCCTGTACGCACAGTCGTGTCG
CGCTAGCCTTTTGAGATTCATTTTGTTTCACACTTGAAAAGCCTGAGTGA
GTGTTTATTGGTAGTGCTGCATGTCGCTTGTGCCGTTGTAATTTTTGTCT
TTCAGTTGGACGACTGGACTCTGAATCCTTCGTTCTGCAGCCTCACCCCG
CCGGTGGAACATCAATGACTCAACCATTCGTTGCGTCGTGTAACCGACGC
TTGCCGTCAGACGCCTGCCCGACTGCGACGATATCTCCGTCAATGGCAAC
CACGTTCCTCTCCGATTTTTTTTCAACCGTTGTATTGTCCGAAAGTTATA
ACCACGATACTCCCCGACACTTACAACTCAGGGTACTCTCCGAAAACTAC
AACCATGATACTCGATGGAGATGGCGAAACGGGCACTACATTTCGTTATC
AACACATTACACGACAGCATACTATTAAAGAACGCCACACACCTTTCAGC
ACAAAAGCACGTTATTTTTCTTCGGCCTCACTACGTAGGCATAGGCGTTA
CACGTATTTGCCCAGCTTGGCGGCGTGGTTCGACGTACCTTACAACACGC
AAGACACCACACACCCCCGTGAGATAATGTCAGAGCCGACCTTCTCCAAA
AGCCAGGGGGGGGGGGCTCACACATACAACGAAAAATGGCGGCATTGAGA
ATAATTTCGTCGAGATATTTCCGTGTATAGACTCATCGCCCGTCGTTGGC
ACTCTCTCCGTTGTTGAGATAAAAAAAACAGCTCGGAAATCCGTCCGAGT
GTTATTTCATCGCCCGTGTGGTACAGTATATGCTATCACGGCACGGTCGC
TTTTGAATACCTCGGCTGCGTTCCACGCCTGCCATTACCTCGTGCGCTGT
CAGGACAATTTTCTTGCATCGACACCGAAGAAGCACGATCCACCAGCTAT
CTTTTTCCAGGATTTAAGAGGGCTCCATGATAATTATAGCCATTCGCCCT
CCCTGCCTCACAGATCCTACTGACCCTCTTTTCTTCTTTGCCGCAGGGCT
CTTCCGCTTCGGATTCTAAGCCTGGGCAAGCCGACCTCACGAATGGACCA
ACAACTCTGAAACAAACGCCTTTACTCGGAAAGAAGTCCACCCCTTCCCG
GAGACCCCGTGAACTCAGTAGTAGCGATGCCGCAACGACTCCGCGAAGCG
GATCTAAATCGTCGGTTAGCGCTCCGGGTTCGTCGACGACACCTTCTCGG
TCACCTCACGACGGTTCAACCGACGTCATCACTAGCGCGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8404:5103..6594-

>mRNA_M-pyrifera_M_contig8404.19607.1 ID=mRNA_M-pyrifera_M_contig8404.19607.1|Name=mRNA_M-pyrifera_M_contig8404.19607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig8404:5103..6594- (Macrocystis pyrifera P11B4 male)
ATGAGACGTGGCGGGGATGCACGCGGGCATCAGAAGATGAGACGTGGCGG
GGATGCACGCGGGCATCAGAAGGGCTCTTCCGCTTCGGATTCTAAGCCTG
GGCAAGCCGACCTCACGAATGGACCAACAACTCTGAAACAAACGCCTTTA
CTCGGAAAGAAGTCCACCCCTTCCCGGAGACCCCGTGAACTCAGTAGTAG
CGATGCCGCAACGACTCCGCGAAGCGGATCTAAATCGTCGGTTAGCGCTC
CGGGTTCGTCGACGACACCTTCTCGGTCACCTCACGACGGTTCAACCGAC
GTCATCACTAGCGCGCGAGGCTCTTCCGCTTCGGATTCTAAGCCTGGGCA
AGCCGACCTCACGAATGGACCAACAACTCTGAAACAAACGCCTTTACTCG
GAAAGAAGTCCACCCCTTCCCGGAGACCCCGTGAACTCAGTAGTAGCGAT
GCCGCAACGACTCCGCGAAGCGGATCTAAATCGTCGGTTAGCGCTCCGGG
TTCGTCGACGACACCTTCTCGGTCACCTCACGACGGTTCAACCGACGTCA
TCACTAGCGCGCGA
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