mRNA_M-pyrifera_M_contig84038.19606.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84038.19606.1
Unique NamemRNA_M-pyrifera_M_contig84038.19606.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A7Y2DK64_9ACTN (DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DK64_9ACTN)

HSP 1 Score: 265 bits (678), Expect = 8.420e-81
Identity = 150/283 (53.00%), Postives = 180/283 (63.60%), Query Frame = 1
Query:    4 GNAGLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWVATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            G  G LTP   D  VPT+TAH  E  EA  IA+ +R  R   E W+ QAVLVRTNAQL+ IEQAL  +GIPVR+RGG GPLA+ EVK  +R L RPG+D A++V                   D  ADE  D    PP           L+P E +R  N  AL  LVRDYLA D  P+GP   AW+AT+Q+ EV  + DAV+L+TFH AKGLEW VVH+AG+E GFVPISYA+TG QLAEE+RLLYVAVTRA RELH+++A  R F T+   R  SPYL +I
Sbjct:  297 GKGGDLTPQTSDGPVPTVTAHDDENEEATAIAERVRQTRDPAEGWNGQAVLVRTNAQLVVIEQALAAAGIPVRMRGGKGPLATPEVKEIIRRLGRPGIDFAQAV-------------------DAFADELED----PP---------DDLSPNEAERHANRQALLRLVRDYLAEDSQPSGPNFLAWLATVQSNEVHRDADAVDLSTFHGAKGLEWSVVHIAGLEQGFVPISYAETGAQLAEERRLLYVAVTRARRELHLSFAEQRTFRTKPAARRPSPYLAEI 547          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A7Y2N9M1_9ACTN (DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9M1_9ACTN)

HSP 1 Score: 261 bits (668), Expect = 2.640e-79
Identity = 140/287 (48.78%), Postives = 185/287 (64.46%), Query Frame = 1
Query:    4 GNAGLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSV----ADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWVATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            G    L  ++ D  VPT+ ++  E  EA+GIADA+R +R+  E W+ QAVLVRTNAQL+PIEQAL  +GIPVR+RGG GPLA+ EV+  ++ + RPG+D +++V    A+LE  +  P                                    +P E +R  N  AL  ++R+Y  VDP P+GP   AW+ATIQA EV  ++DAV+L+TFH +KGLEWPVVHLAG+E GFVPISYA+TG QLAEE+RLLYVA+TRAERELH+++A  R F T+   R  SPYL +I
Sbjct:  297 GKGNDLIANQGDGPVPTVESYEDETAEAIGIADAVRQSRAPSEGWNGQAVLVRTNAQLVPIEQALAGAGIPVRIRGGKGPLATPEVREVIKRIGRPGIDFSQAVETFAAELEEPLEDP------------------------------------SPNEAERYANKQALLQVIRNYTVVDPRPSGPDFLAWLATIQANEVHRDSDAVDLSTFHGSKGLEWPVVHLAGLEQGFVPISYAETGAQLAEERRLLYVAITRAERELHLSYAEERTFRTKPTSRRPSPYLGEI 547          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: UPI0020176A22 (ATP-dependent DNA helicase UvrD2 n=2 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI0020176A22)

HSP 1 Score: 238 bits (607), Expect = 6.350e-70
Identity = 138/281 (49.11%), Postives = 169/281 (60.14%), Query Frame = 1
Query:   13 GLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWV-ATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            G L   R +  VPT+TAH  +  EA GIA A+R     G PWS QAVLVRTNAQ+  +E+AL + GIP RVRGG   L   EVK+ LR + R       ++ADLE +VA PD   G  +E                                +RR NL AL  L  DY AV+P+P+ PG   W+ AT +A +   + DAVE+ATFH+AKGLEWPVVHLAG+E G VPI +A+TG  LAEE RL YVA+TRAEREL +TWAA R FGTR+ KR  SPYLE +
Sbjct:  325 GALVATRPEGPVPTVTAHDDDRAEARGIARAVRDQHRPGSPWSAQAVLVRTNAQITLLEEALHEVGIPFRVRGGAALLDQPEVKAALRTVQRATGGFPEALADLEAAVADPDGTEGDRAE--------------------------------ERRANLEALVRLAHDYTAVEPVPSVPGFLTWLRATTRADQPDRHGDAVEIATFHAAKGLEWPVVHLAGLEQGLVPIGHARTGEALAEELRLFYVALTRAERELCLTWAAERTFGTRAMKRDRSPYLETV 573          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: UPI001F3B463F (ATP-dependent DNA helicase UvrD2 n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F3B463F)

HSP 1 Score: 213 bits (542), Expect = 6.320e-61
Identity = 126/284 (44.37%), Postives = 165/284 (58.10%), Query Frame = 1
Query:    4 GNAGLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWV-ATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            G AG L  HR D  VP + + P E  EA GIA A+R     G  W+ QAVLVRTNAQ+  +E+A   + +P RVRG G  L   +VK++LREL +   +LA ++ADLE + A    EL    +D                            A  +R  N+ AL  L RDY A+DP  +  G  AW+  T +A +     DAVE+ATFH+AKGLEWP+VH+AG+E G VPI++A+T   LAEE+RLLYVAVTRAE++L  +WA  R +G R+  R  SPYLE I
Sbjct:  277 GQAGALRAHRPDGPVPLVRSFPHERAEAAGIARAVRDHHHPGARWASQAVLVRTNAQIALLEEAFRAARVPFRVRGNGALLDQPDVKARLRELHQTARELATAIADLEVAAA----ELRAADDD----------------------------ASAERAGNVEALVQLARDYAALDPAGSVEGFLAWLRTTTRADQPDVVGDAVEIATFHAAKGLEWPIVHIAGLEQGLVPIAHARTPAALAEERRLLYVAVTRAEQQLLCSWAEHRTYGERTVPREASPYLEAI 528          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A6J6JLY4_9ZZZZ (DNA helicase n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6JLY4_9ZZZZ)

HSP 1 Score: 197 bits (500), Expect = 4.890e-57
Identity = 124/279 (44.44%), Postives = 159/279 (56.99%), Query Frame = 1
Query:   13 GLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWV-ATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLE 846
            G  +  R D  VP++   P E  EA  IA A R     G  WS+QAVLVRTNAQL  IE+A+  +GIP RVRG    L   EVK+ L +L R     + ++ DL  SV + D+     SE                    ++R+A       +RR NL AL  + RDY+A++  P   G   W+ AT +A +   N +A+EL TFH+AKGLEWP+VHLAGIE G+VPI +AKT G  AEE+RL YVA TRAEREL  TWA SR FG R+  R  S +L+
Sbjct:   12 GTQSATRPDGGVPSVRELPDERAEAAAIARAARDRHGPGARWSNQAVLVRTNAQLPIIEEAMKSAGIPFRVRGATPLLDQPEVKAALGDLRRTPRPFSDAIHDLALSVVVDDE-----SE--------------------SDRAA-------ERRANLDALVQMARDYMAIESPPTANGFFLWLTATTRADQPDPNGEAIELLTFHAAKGLEWPIVHLAGIEQGYVPIGHAKTPGAWAEERRLFYVAATRAERELLCTWAKSRTFGERAIPRDRSEFLD 258          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A538GW74_9ACTN (DNA helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538GW74_9ACTN)

HSP 1 Score: 203 bits (517), Expect = 8.920e-57
Identity = 127/281 (45.20%), Postives = 156/281 (55.52%), Query Frame = 1
Query:   19 LTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPG--VDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWVA-TIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            L P+R D  VPT+T HP++  EA  +A A+R     G PWS  AVL RTNAQ +  E+A   + +P RVRGGG  L   EVK  L +L R    V  A  +ADLE   AM  DE GG  E                                 RR ++ AL  L R+Y A DP  +  G   W+A T++A E     DAV+L TFH AKGLEWPVV LAG+E G VPI +A T    AEE+RLLYVA+TRAERELH +WA  R FG+R++ RT SPYL  +
Sbjct:  372 LRPNRGDGPVPTVTCHPTDVDEARAVARALRDRHGPGRPWSQLAVLTRTNAQSVLFEEAFRAARVPYRVRGGGAFLDQPEVKDALADLRRSPARVPFASQLADLE---AMAVDE-GGTDE---------------------------------RRLHIDALVRLGREYTAADPAASASGFLGWLAATVRADEPEQAGDAVQLVTFHRAKGLEWPVVFLAGLERGLVPIGHATTPEDRAEERRLLYVAITRAERELHCSWAERRTFGSRTQTRTASPYLSAV 615          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A5Q2RNP1_9ACTN (DNA helicase n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RNP1_9ACTN)

HSP 1 Score: 202 bits (513), Expect = 1.670e-56
Identity = 127/284 (44.72%), Postives = 159/284 (55.99%), Query Frame = 1
Query:   19 LTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSV-----AMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWV-ATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            L  +R D   P I + PS+  EA GIA A+R AR+    WS QAVLVRTNAQ   + +AL  +GIP RVRGG G L   EV++ L  L R       ++ADLE ++     A PDDE      D                          + A  +RR NL  L  L RDY  +D  P   G  AW+ AT+  G  A + DAV++ TFH+AKGLEWPVVHLAG+E G+VPI +A T   LAEE+RL YVAVTRAE  L  +WA +R FG R+ +R  SPYL Q+
Sbjct:  301 LRANRPDGPAPLIRSFPSDAAEARGIARAVRDARAPNARWSTQAVLVRTNAQTALLSEALQAAGIPHRVRGGTGLLEQAEVRTALAGLRRHHGAFDVAIADLEATIEPEPTADPDDEAAAAPTDT-------------------------SDAVAERRANLEMLVRLARDYQRIDLAPTSDGFLAWLRATV--GSDAPDRDAVDVTTFHAAKGLEWPVVHLAGLEQGYVPIGHATTPAALAEERRLFYVAVTRAEERLLCSWAETRTFGQRTAQREPSPYLVQV 557          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A538LRF8_9ACTN (DNA helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LRF8_9ACTN)

HSP 1 Score: 202 bits (514), Expect = 1.760e-56
Identity = 129/285 (45.26%), Postives = 159/285 (55.79%), Query Frame = 1
Query:    7 NAGLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGV--DLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWVATIQAGEVATNN-DAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLEQI 852
            NA LL   + D  VPT+TA  S+  EA  IA  +R  R  G PW+H AVL RTNAQL+ +E+AL  + IP RV GG   L   EV+  L +L R  V       +ADLE  VA       G+          +              + P  P E DRR +L  L  L R+Y A+DP  +  G +AW+A     E A +  DAVEL TFH AKGLEWPVV LAG+E G VPI  A T    AEE+RLLYVA+TRAERELH +WA  R FG+R+  RT SPYL+ +
Sbjct:  305 NADLLRATQADGPVPTVTASDSDVSEARTIASRLRRTRRPGMPWAHLAVLTRTNAQLVLLEEALRSARIPYRVSGGEAFLERPEVRDALDDLRRAPVRTPFGARLADLEARVA-------GIGTAGPGGRPEETXXXXXXXXXXXXTAGPGRPDEDDRRSHLEGLVRLGREYEAMDPAASAEGFSAWLAATVRSEGAEDGADAVELTTFHRAKGLEWPVVFLAGLERGLVPIGRAATPAAEAEERRLLYVALTRAERELHCSWAERRTFGSRTVTRTRSPYLDAV 582          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A7K1BKC4_9ACTN (DNA helicase n=15 Tax=root TaxID=1 RepID=A0A7K1BKC4_9ACTN)

HSP 1 Score: 197 bits (502), Expect = 7.080e-55
Identity = 124/279 (44.44%), Postives = 159/279 (56.99%), Query Frame = 1
Query:   13 GLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWV-ATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLE 846
            G  +  R D  VP++   P E  EA  IA A R     G  WS+QAVLVRTNAQL  IE+A+  +GIP RVRG    L   E+K+ L +L R     + ++ DL  SV + D+     SE                    ++R+A       +RR NL AL  + RDY+A++  P   G   W+ AT +A +   N +A+EL TFH+AKGLEWP+VHLAGIE G+VPI +AKT G  AEE+RL YVA TRAEREL  TWA SR FG RS  R  S +L+
Sbjct:  306 GTQSATRPDGGVPSVRELPDERAEAAAIARAARDRHGPGARWSNQAVLVRTNAQLPIIEEAMKSAGIPFRVRGATPLLDQPEIKAALGDLRRTPRPFSDAIHDLALSVVVDDE-----SE--------------------SDRAA-------ERRANLDALVQMARDYMAIESPPTANGFFLWLTATTRADQPDPNGEAIELLTFHAAKGLEWPIVHLAGIEQGYVPIGHAKTPGAWAEERRLFYVAATRAERELLCTWAKSRTFGERSIPRDRSEFLD 552          
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Match: A0A6J7IRY6_9ZZZZ (DNA helicase n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7IRY6_9ZZZZ)

HSP 1 Score: 197 bits (501), Expect = 1.060e-54
Identity = 124/279 (44.44%), Postives = 160/279 (57.35%), Query Frame = 1
Query:   13 GLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQAVLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVDLARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAPLTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWV-ATIQAGEVATNNDAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVAVTRAERELHITWAASRIFGTRSRKRTVSPYLE 846
            G  +  R D  VP++   P E  EA  IA A R     G  WS+QAVLVRTNAQL  IE+A+  +GIP RVRG    L   EVK+ L +L R     + ++ DL  SV + D+     SE                    ++R+A       +RR NL AL  + RDY+A++  P+  G   W+ AT +A +   N +A+EL TFH+AKGLEWP+VHLAGIE G+VPI +AKT G  AEE+RL YVA TRAEREL  TWA SR FG R+  R  S +L+
Sbjct:  312 GTQSATRPDGGVPSVRELPDERAEAAAIARAARDRHGPGARWSNQAVLVRTNAQLPIIEEAMKSAGIPFRVRGATPLLDQPEVKAALGDLRRTPRPFSDAIHDLALSVVVDDE-----SE--------------------SDRAA-------ERRANLDALVQMARDYMAIESPPSANGFFLWLTATTRADQPDPNGEAIELLTFHAAKGLEWPIVHLAGIEQGYVPIGHAKTPGAWAEERRLFYVAATRAERELLCTWAKSRTFGERAIPRDRSEFLD 558          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84038.19606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DK64_9ACTN8.420e-8153.00DNA helicase n=1 Tax=Acidimicrobiales bacterium Ta... [more]
A0A7Y2N9M1_9ACTN2.640e-7948.78DNA helicase n=1 Tax=Acidimicrobiales bacterium Ta... [more]
UPI0020176A226.350e-7049.11ATP-dependent DNA helicase UvrD2 n=2 Tax=Rhabdothe... [more]
UPI001F3B463F6.320e-6144.37ATP-dependent DNA helicase UvrD2 n=1 Tax=Rhabdothe... [more]
A0A6J6JLY4_9ZZZZ4.890e-5744.44DNA helicase n=1 Tax=freshwater metagenome TaxID=4... [more]
A0A538GW74_9ACTN8.920e-5745.20DNA helicase n=1 Tax=Actinomycetia bacterium TaxID... [more]
A0A5Q2RNP1_9ACTN1.670e-5644.72DNA helicase n=1 Tax=Actinomarinicola tropica TaxI... [more]
A0A538LRF8_9ACTN1.760e-5645.26DNA helicase n=1 Tax=Actinomycetia bacterium TaxID... [more]
A0A7K1BKC4_9ACTN7.080e-5544.44DNA helicase n=15 Tax=root TaxID=1 RepID=A0A7K1BKC... [more]
A0A6J7IRY6_9ZZZZ1.060e-5444.44DNA helicase n=1 Tax=freshwater metagenome TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84038contigM-pyrifera_M_contig84038:29..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score199.5
Seed ortholog evalue2.1e-48
Seed eggNOG ortholog1229780.BN381_10320
Preferred nameuvrD2
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0006996,GO:0008094,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0040007,GO:0042623,GO:0043167,GO:0043169,GO:0046872,GO:0051276,GO:0071103,GO:0071840,GO:0140097
EggNOG free text desc.UvrD-like helicase C-terminal domain
EggNOG OGs2GKRW@201174,3UW87@52018,COG0210@1,COG0210@2
EC3.6.4.12
COG Functional cat.L
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size852
Cds size852
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.6587977-CDS-M-pyrifera_M_contig84038:28..8801622816747.6587977-CDS-M-pyrifera_M_contig84038:28..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84038 29..880 +
1692278154.4675303-CDS-M-pyrifera_M_contig84038:28..8801692278154.4675303-CDS-M-pyrifera_M_contig84038:28..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84038 29..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84038.19606.1prot_M-pyrifera_M_contig84038.19606.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84038 29..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84038.19606.1

>prot_M-pyrifera_M_contig84038.19606.1 ID=prot_M-pyrifera_M_contig84038.19606.1|Name=mRNA_M-pyrifera_M_contig84038.19606.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=284bp
DGNAGLLTPHRHDAAVPTITAHPSEELEALGIADAIRAARSVGEPWSHQA
VLVRTNAQLIPIEQALVKSGIPVRVRGGGGPLASQEVKSKLRELSRPGVD
LARSVADLERSVAMPDDELGGVSEDLDADEASDRHLVPPVVIDLTERSAP
LTPAEIDRRQNLAALANLVRDYLAVDPMPNGPGLAAWVATIQAGEVATNN
DAVELATFHSAKGLEWPVVHLAGIEAGFVPISYAKTGGQLAEEQRLLYVA
VTRAERELHITWAASRIFGTRSRKRTVSPYLEQI
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mRNA from alignment at M-pyrifera_M_contig84038:29..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84038.19606.1 ID=mRNA_M-pyrifera_M_contig84038.19606.1|Name=mRNA_M-pyrifera_M_contig84038.19606.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig84038:29..880+ (Macrocystis pyrifera P11B4 male)
GACGGCAACGCCGGTCTGCTCACCCCCCATCGCCACGACGCCGCCGTCCC CACCATCACGGCCCACCCCAGCGAAGAGCTCGAGGCACTCGGTATCGCCG ATGCCATTCGTGCTGCTCGGTCGGTCGGCGAGCCCTGGTCACACCAGGCG GTGCTCGTCCGCACCAACGCCCAGCTGATCCCCATCGAGCAGGCCCTGGT CAAGAGCGGCATCCCCGTGCGGGTTCGTGGCGGCGGCGGCCCCCTGGCCA GCCAAGAGGTCAAGTCGAAACTGCGCGAGCTCAGCCGCCCCGGGGTCGAT CTGGCTCGTTCGGTCGCCGACCTCGAGCGCTCGGTGGCCATGCCCGACGA CGAACTCGGCGGAGTGTCGGAAGATCTCGACGCCGACGAGGCCTCCGATC GCCACCTGGTGCCGCCGGTCGTCATCGACCTCACCGAACGAAGCGCTCCG CTGACGCCGGCCGAGATCGACCGACGGCAGAACCTCGCTGCGCTGGCCAA CCTCGTGCGCGACTACTTGGCGGTCGACCCGATGCCGAACGGTCCGGGCC TGGCCGCCTGGGTCGCCACCATCCAGGCCGGCGAAGTCGCCACCAACAAC GACGCCGTCGAGCTGGCAACCTTCCACAGCGCCAAGGGACTCGAGTGGCC GGTGGTCCACCTCGCAGGCATCGAGGCCGGTTTCGTTCCCATCAGCTACG CGAAGACCGGTGGGCAGCTCGCCGAAGAACAGCGTCTGCTCTATGTGGCG GTCACCCGGGCCGAGCGTGAGCTGCACATCACCTGGGCGGCCAGCCGAAT CTTCGGTACTCGGTCCCGCAAGCGCACGGTCTCGCCCTACCTCGAACAGA TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84038:29..880+

>mRNA_M-pyrifera_M_contig84038.19606.1 ID=mRNA_M-pyrifera_M_contig84038.19606.1|Name=mRNA_M-pyrifera_M_contig84038.19606.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1704bp|location=Sequence derived from alignment at M-pyrifera_M_contig84038:29..880+ (Macrocystis pyrifera P11B4 male)
GACGGCAACGCCGGTCTGCTCACCCCCCATCGCCACGACGCCGCCGTCCC
CACCATCACGGCCCACCCCAGCGAAGAGCTCGAGGCACTCGGTATCGCCG
ATGCCATTCGTGCTGCTCGGTCGGTCGGCGAGCCCTGGTCACACCAGGCG
GTGCTCGTCCGCACCAACGCCCAGCTGATCCCCATCGAGCAGGCCCTGGT
CAAGAGCGGCATCCCCGTGCGGGTTCGTGGCGGCGGCGGCCCCCTGGCCA
GCCAAGAGGTCAAGTCGAAACTGCGCGAGCTCAGCCGCCCCGGGGTCGAT
CTGGCTCGTTCGGTCGCCGACCTCGAGCGCTCGGTGGCCATGCCCGACGA
CGAACTCGGCGGAGTGTCGGAAGATCTCGACGCCGACGAGGCCTCCGATC
GCCACCTGGTGCCGCCGGTCGTCATCGACCTCACCGAACGAAGCGCTCCG
CTGACGCCGGCCGAGATCGACCGACGGCAGAACCTCGCTGCGCTGGCCAA
CCTCGTGCGCGACTACTTGGCGGTCGACCCGATGCCGAACGGTCCGGGCC
TGGCCGCCTGGGTCGCCACCATCCAGGCCGGCGAAGTCGCCACCAACAAC
GACGCCGTCGAGCTGGCAACCTTCCACAGCGCCAAGGGACTCGAGTGGCC
GGTGGTCCACCTCGCAGGCATCGAGGCCGGTTTCGTTCCCATCAGCTACG
CGAAGACCGGTGGGCAGCTCGCCGAAGAACAGCGTCTGCTCTATGTGGCG
GTCACCCGGGCCGAGCGTGAGCTGCACATCACCTGGGCGGCCAGCCGAAT
CTTCGGTACTCGGTCCCGCAAGCGCACGGTCTCGCCCTACCTCGAACAGA
TCGACGGCAACGCCGGTCTGCTCACCCCCCATCGCCACGACGCCGCCGTC
CCCACCATCACGGCCCACCCCAGCGAAGAGCTCGAGGCACTCGGTATCGC
CGATGCCATTCGTGCTGCTCGGTCGGTCGGCGAGCCCTGGTCACACCAGG
CGGTGCTCGTCCGCACCAACGCCCAGCTGATCCCCATCGAGCAGGCCCTG
GTCAAGAGCGGCATCCCCGTGCGGGTTCGTGGCGGCGGCGGCCCCCTGGC
CAGCCAAGAGGTCAAGTCGAAACTGCGCGAGCTCAGCCGCCCCGGGGTCG
ATCTGGCTCGTTCGGTCGCCGACCTCGAGCGCTCGGTGGCCATGCCCGAC
GACGAACTCGGCGGAGTGTCGGAAGATCTCGACGCCGACGAGGCCTCCGA
TCGCCACCTGGTGCCGCCGGTCGTCATCGACCTCACCGAACGAAGCGCTC
CGCTGACGCCGGCCGAGATCGACCGACGGCAGAACCTCGCTGCGCTGGCC
AACCTCGTGCGCGACTACTTGGCGGTCGACCCGATGCCGAACGGTCCGGG
CCTGGCCGCCTGGGTCGCCACCATCCAGGCCGGCGAAGTCGCCACCAACA
ACGACGCCGTCGAGCTGGCAACCTTCCACAGCGCCAAGGGACTCGAGTGG
CCGGTGGTCCACCTCGCAGGCATCGAGGCCGGTTTCGTTCCCATCAGCTA
CGCGAAGACCGGTGGGCAGCTCGCCGAAGAACAGCGTCTGCTCTATGTGG
CGGTCACCCGGGCCGAGCGTGAGCTGCACATCACCTGGGCGGCCAGCCGA
ATCTTCGGTACTCGGTCCCGCAAGCGCACGGTCTCGCCCTACCTCGAACA
GATC
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