mRNA_M-pyrifera_M_contig84032.19604.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84032.19604.1
Unique NamemRNA_M-pyrifera_M_contig84032.19604.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A6H5J7G6_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7G6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.600e-47
Identity = 82/92 (89.13%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVDDDDSGLL 276
            SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPL FSCLFWYTEDT+LPG PYLIA +VCLAAL+LS+E+PD++DDDDSGLL
Sbjct:  352 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTLLPGCPYLIAAVVCLAALLLSYEIPDAIDDDDSGLL 443          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A836CJ60_9STRA (Hippocampus abundant transcript 1 protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ60_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.300e-28
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVDD 258
            SLLSNLVYP++SSL+SRSV+T+ QGEVLG INGVRALTEGFGPL F  L    E T+LPG PYLIAG V + ALV SF +PD  DD
Sbjct:  348 SLLSNLVYPAMSSLVSRSVSTAAQGEVLGTINGVRALTEGFGPLIFGALMSQFEGTLLPGAPYLIAGGVSVGALVYSFGIPDETDD 433          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A7S2SCZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCZ5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-23
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELP 243
            SL SNLVYPS+ SL+SR+V   KQG   G+INGV+ALTEGFGPL F  L    EDT LPG PYLI G + L A+ ++F +P
Sbjct:   15 SLFSNLVYPSLCSLVSRNVPADKQGAAQGSINGVKALTEGFGPLAFGLLMNVFEDTALPGAPYLIGGFITLLAVAVTFRIP 95          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A6V3A0Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A0Z0_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 3.220e-22
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVD 255
            S+ SNLVYPS+SSL+SR V   +QGE LGA+NGV+ALTEGFGPL F  L    E T++PG PYL+A      ALV SF LP+  D
Sbjct:  339 SVFSNLVYPSLSSLVSRGVGAGRQGEALGALNGVKALTEGFGPLLFGHLLAAFEGTVVPGAPYLVAAAFAAGALVTSFALPEDPD 423          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A4D9D9X9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9X9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.140e-21
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVD 255
            S L+NLVYP++SSL+SRSV  SKQGE LGA+NG+RALTEGFGPL F  L +  +DT  PG PYL+A    +AAL+ + +LP   +
Sbjct:  378 STLANLVYPAVSSLVSRSVPPSKQGEALGAMNGIRALTEGFGPLLFGSLMFLCQDTRAPGAPYLLASACSVAALLQTNKLPSEAE 462          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A7S2XVJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.910e-21
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPD 246
            S+LSNLVYP++SS++SR V  ++ G  LGA+NGV+ALTEGFGPL F  L +  EDT LPG PYLIA +  + AL+ S+ L +
Sbjct:  141 SVLSNLVYPALSSMVSRGVGPNQVGVALGAMNGVKALTEGFGPLCFGALLFQFEDTRLPGAPYLIAAMFAIGALLASYSLKE 222          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A6U3VK78_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VK78_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.490e-21
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVDDDD 264
            S LS+LVYPS++SL+S +V   K GE LGA+NG+++LTEGFGPL F  L   +E+++LPG PYL+A LV   A   S  LP   D  D
Sbjct:   38 STLSHLVYPSLASLVSTTVPPEKVGEALGAVNGIKSLTEGFGPLCFGVLMTLSEESVLPGWPYLLAALVAYGAYKRSLLLPTEDDSKD 125          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A1Z5JPM2_FISSO (MFS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPM2_FISSO)

HSP 1 Score: 93.2 bits (230), Expect = 3.510e-20
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVDDD 261
            SLL NLVYPS+SSL+S SV     GE LGAING++ALTEG GPL F  L   +E + LPG PYL+A L+  AA  ++ ELPD  +DD
Sbjct:  400 SLLGNLVYPSLSSLVSGSVEPDAVGEALGAINGIKALTEGIGPLVFGSLMTLSEASPLPGWPYLLASLLVFAAYRVADELPDLEEDD 486          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A836CPP9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.810e-20
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 LSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAAL 222
            LSNL YPS+SSL+S+SV+   QGEVLG INGVRALTEGFGPL F  L  Y E + LPG PYLIA  V +AAL
Sbjct:  413 LSNLFYPSMSSLVSKSVSLEAQGEVLGTINGVRALTEGFGPLVFGALMSYFETSALPGAPYLIASAVGVAAL 484          
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Match: A0A8J2S4T1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4T1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.750e-19
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLFWYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVDDDDSG 270
            SL+SNLVYP++S+L++R    ++ GE LGA+NGV+ALTEG GPL F  +    E T LPGLPYL    + L A  LS  LPD   D+D G
Sbjct:  314 SLVSNLVYPALSALVARRAEATEVGEALGALNGVKALTEGVGPLGFGLVMVEFERTALPGLPYLACAALALLAWALSHRLPDLQKDEDEG 403          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84032.19604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5J7G6_9PHAE2.600e-4789.13MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJ60_9STRA6.300e-2869.77Hippocampus abundant transcript 1 protein (Fragmen... [more]
A0A7S2SCZ5_9STRA2.200e-2359.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V3A0Z0_HETAK3.220e-2258.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9X9_9STRA1.140e-2157.65MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2XVJ1_9STRA4.910e-2156.10Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6U3VK78_9STRA8.490e-2152.27Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JPM2_FISSO3.510e-2057.47MFS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A836CPP9_9STRA3.810e-2068.06Major facilitator superfamily domain-containing pr... [more]
A0A8J2S4T1_9STRA2.750e-1952.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84032contigM-pyrifera_M_contig84032:129..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.1e-38
Seed eggNOG ortholog2880.D7FX29
Preferred nameHIAT1
KEGG koko:K10393
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.folate import across plasma membrane
EggNOG OGsKOG2816@1,KOG2816@2759
Ec32 ortholog descriptionHippocampus abundant transcript 1 protein (Putative tetracycline transporter-like protein)
Ec32 orthologEc-10_004070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.582116-CDS-M-pyrifera_M_contig84032:128..4041622816747.582116-CDS-M-pyrifera_M_contig84032:128..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84032 129..404 +
1692278154.4168127-CDS-M-pyrifera_M_contig84032:128..4041692278154.4168127-CDS-M-pyrifera_M_contig84032:128..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84032 129..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84032.19604.1prot_M-pyrifera_M_contig84032.19604.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84032 129..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84032.19604.1

>prot_M-pyrifera_M_contig84032.19604.1 ID=prot_M-pyrifera_M_contig84032.19604.1|Name=mRNA_M-pyrifera_M_contig84032.19604.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLTFSCLF
WYTEDTILPGLPYLIAGLVCLAALVLSFELPDSVDDDDSGLL
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mRNA from alignment at M-pyrifera_M_contig84032:129..404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84032.19604.1 ID=mRNA_M-pyrifera_M_contig84032.19604.1|Name=mRNA_M-pyrifera_M_contig84032.19604.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig84032:129..404+ (Macrocystis pyrifera P11B4 male)
TCCCTGCTGAGCAACCTCGTGTACCCGTCGATCTCCAGCCTCATCTCCCG GTCCGTGGCCACCTCAAAGCAGGGCGAGGTGCTAGGTGCCATAAACGGCG TCCGCGCTCTCACAGAGGGCTTCGGCCCCCTGACCTTCTCTTGCCTCTTC TGGTACACGGAGGACACCATTCTCCCCGGCCTTCCCTACCTCATAGCGGG CCTCGTCTGTCTCGCGGCGCTGGTTTTGTCGTTCGAGCTGCCGGACTCCG TGGACGACGACGATTCGGGTCTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84032:129..404+

>mRNA_M-pyrifera_M_contig84032.19604.1 ID=mRNA_M-pyrifera_M_contig84032.19604.1|Name=mRNA_M-pyrifera_M_contig84032.19604.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig84032:129..404+ (Macrocystis pyrifera P11B4 male)
TCCCTGCTGAGCAACCTCGTGTACCCGTCGATCTCCAGCCTCATCTCCCG
GTCCGTGGCCACCTCAAAGCAGGGCGAGGTGCTAGGTGCCATAAACGGCG
TCCGCGCTCTCACAGAGGGCTTCGGCCCCCTGACCTTCTCTTGCCTCTTC
TGGTACACGGAGGACACCATTCTCCCCGGCCTTCCCTACCTCATAGCGGG
CCTCGTCTGTCTCGCGGCGCTGGTTTTGTCGTTCGAGCTGCCGGACTCCG
TGGACGACGACGATTCGGGTCTCCTGTCCCTGCTGAGCAACCTCGTGTAC
CCGTCGATCTCCAGCCTCATCTCCCGGTCCGTGGCCACCTCAAAGCAGGG
CGAGGTGCTAGGTGCCATAAACGGCGTCCGCGCTCTCACAGAGGGCTTCG
GCCCCCTGACCTTCTCTTGCCTCTTCTGGTACACGGAGGACACCATTCTC
CCCGGCCTTCCCTACCTCATAGCGGGCCTCGTCTGTCTCGCGGCGCTGGT
TTTGTCGTTCGAGCTGCCGGACTCCGTGGACGACGACGATTCGGGTCTCC
TG
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