mRNA_M-pyrifera_M_contig8403.19603.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8403.19603.1
Unique NamemRNA_M-pyrifera_M_contig8403.19603.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: D8LMQ3_ECTSI (Nitroreductase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ3_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.800e-34
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    1 QFSLAVNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            +F LAVNLFSGEG VGN VRNAVT++ASPMQPAPEV SAEAWSFKNTALA QT+ILSC AHGL TAPMEGFDARR
Sbjct:  177 KFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARR 251          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A835Z3C4_9STRA (Putative nitroreductase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.360e-19
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   16 VNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            + LF GEGA    +R  VT+  SP++P P V S EAWS+K+  LAAQT++L+  AHGLATAPMEGFD RR
Sbjct:  107 IGLFGGEGAAAEALRRGVTAALSPLKPMPSVTSTEAWSYKHAGLAAQTYLLAATAHGLATAPMEGFDGRR 176          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A7S1Z9L0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9L0_TRICV)

HSP 1 Score: 81.3 bits (199), Expect = 4.360e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   13 AVNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            A +  SGEG +   ++ A T   SP+QP P V S +AW++KN  + AQT+IL+CE+HGLAT  MEGFDARR
Sbjct:  134 ASSFLSGEGHLATWLKQAATDALSPIQPMPTVDSVQAWAYKNAGMMAQTYILACESHGLATCAMEGFDARR 204          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A7S4DH27_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH27_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 2.000e-15
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   16 VNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            V L SG G +    ++ + +  SP+QP P   + EAW+FKNT L  QTFIL C AHGLA+APMEGFDARR
Sbjct:  143 VGLLSGGGPLVGHAKDLLLTGLSPLQPMPTPNAPEAWAFKNTMLFVQTFILGCTAHGLASAPMEGFDARR 212          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: D0NC21_PHYIT (Nitroreductase family, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NC21_PHYIT)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-15
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   16 VNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            V LFSGEG V + +R A+ +  SP+ P P   S EAW+FK TALAA TF+ + +AH LAT PMEGFD  R
Sbjct:  172 VRLFSGEGVVASGLRAAIATAVSPLLPVPSNVSTEAWAFKQTALAAATFLYAAQAHDLATCPMEGFDQIR 241          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A4D9DF56_9STRA (Nitroreductase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF56_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.810e-15
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   13 AVNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            +V   +G+G + +  ++  T+  SP+QP P V + EAWS+KNTA+AA  ++LSC  HGL T PMEGFD RR
Sbjct:  188 SVAFLAGKGHLAHAFKDLFTTAMSPLQPMPSVSTLEAWSYKNTAIAASWYMLSCSVHGLDTCPMEGFDGRR 258          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A8J2SEC5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEC5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.470e-13
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   10 LAVNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            LAV  ++  G + ++V+    +  SP+ PAP+     AW++K+  LAAQT++L+  AHGLATAPMEGFDA R
Sbjct:  134 LAVGYYATHGKLASLVKGVAANALSPVAPAPQPEGRRAWAYKSAMLAAQTYLLAATAHGLATAPMEGFDAAR 205          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A7S1UTI7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UTI7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.310e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   10 LAVNLFSGEGAVGNVVRNAVTS-MASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            +A    +GEG +   ++ A T+ ++S  QP P +   +AWS+KNTAL AQT++L+  +HGLAT  MEGFD RR
Sbjct:   32 IATRFLTGEGHLATALKQAATAALSSLQQPMPTIEPVQAWSYKNTALMAQTYVLAATSHGLATCIMEGFDGRR 104          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A7S3PX76_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX76_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.960e-13
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   10 LAVNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            +  +   GEG V  +++   T   SP++P P + S +AWS+KNTAL AQTF  +  +HGL+T  MEG+D RR
Sbjct:  124 IVTSFLMGEGKVATLMKQVATDAMSPVKPMPTIDSIQAWSYKNTALVAQTFTFAATSHGLSTCLMEGYDCRR 195          
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Match: A0A6S8C805_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8C805_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.240e-13
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   52 VVRNAVTSMASPMQPAPEVGSAEAWSFKNTALAAQTFILSCEAHGLATAPMEGFDARR 225
            VV+  + S  S +   P + S+E W+FKNT  AAQTFIL C A+GLATAPMEGFDARR
Sbjct:  188 VVKKTLFSTISQVTQMPTINSSEGWAFKNTMTAAQTFILGCHAYGLATAPMEGFDARR 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8403.19603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LMQ3_ECTSI1.800e-3485.33Nitroreductase domain-containing protein n=2 Tax=E... [more]
A0A835Z3C4_9STRA1.360e-1958.57Putative nitroreductase family n=1 Tax=Tribonema m... [more]
A0A7S1Z9L0_TRICV4.360e-1753.52Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4DH27_HETAK2.000e-1555.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D0NC21_PHYIT3.060e-1555.71Nitroreductase family, putative n=3 Tax=Phytophtho... [more]
A0A4D9DF56_9STRA3.810e-1549.30Nitroreductase domain-containing protein n=2 Tax=M... [more]
A0A8J2SEC5_9STRA1.470e-1347.22Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1UTI7_9STRA2.310e-1346.58Hypothetical protein (Fragment) n=2 Tax=Grammatoph... [more]
A0A7S3PX76_9STRA2.960e-1344.44Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6S8C805_9STRA7.240e-1360.34Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8403contigM-pyrifera_M_contig8403:10964..11713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog2880.D8LMQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nitroreductase family
EggNOG OGs2RZ0D@2759,COG0778@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.533125-CDS-M-pyrifera_M_contig8403:10963..110861622816747.533125-CDS-M-pyrifera_M_contig8403:10963..11086Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8403 10964..11086 -
1692278154.3884766-CDS-M-pyrifera_M_contig8403:10963..110861692278154.3884766-CDS-M-pyrifera_M_contig8403:10963..11086Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8403 10964..11086 -
1622816747.5468442-CDS-M-pyrifera_M_contig8403:11608..117131622816747.5468442-CDS-M-pyrifera_M_contig8403:11608..11713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8403 11609..11713 -
1692278154.4057343-CDS-M-pyrifera_M_contig8403:11608..117131692278154.4057343-CDS-M-pyrifera_M_contig8403:11608..11713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8403 11609..11713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8403.19603.1prot_M-pyrifera_M_contig8403.19603.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8403 10964..11713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8403.19603.1

>prot_M-pyrifera_M_contig8403.19603.1 ID=prot_M-pyrifera_M_contig8403.19603.1|Name=mRNA_M-pyrifera_M_contig8403.19603.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
QFSLAVNLFSGEGAVGNVVRNAVTSMASPMQPAPEVGSAEAWSFKNTALA
AQTFILSCEAHGLATAPMEGFDARR*
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mRNA from alignment at M-pyrifera_M_contig8403:10964..11713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8403.19603.1 ID=mRNA_M-pyrifera_M_contig8403.19603.1|Name=mRNA_M-pyrifera_M_contig8403.19603.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig8403:10964..11713- (Macrocystis pyrifera P11B4 male)
CAGTTTTCACTTGCGGTGAATCTGTTCAGCGGCGAAGGAGCCGTCGGCAA CGTGGTGCGGAACGCTGTCACCAGCATGGCGTCTCCAATGCAGCCAGCGC CCGAGGTAAGAGCGGGAAATGCAGGCTGGACGAAATCATTTGACTAAATC CGACTCATTAGGGGATACTGCACCCGACAGTACCGATACAGCAGTACGTA CGCGATATCACTTGGTCTCTTTAGAACCGCACCCACGTTTTAGGGGACAA GATACTTGAAAACAATGCAAGACAATTTTCACAGTTCTAAAGCACCTATT AAAAGGCTGTTCACGGGCCGGGTCAAAAATCGCGACTCGGGTCGGATGGG GTCACTTAACCCGACCCGACTCGACCCGACCCTTGAGATTGCGAATGCCT CCTGACCCAGCCCGACTCGACCCGTGGGTTTTGAAAGACCTCTTGATTCG ACCCGCGGGTCGGTTCTTGACCCGTGAACAGCCTTACGGTAATTTGAGTC AGACTGAAAGTATCATGTGAGGCAGGGTGTGTCGCTTGCTAAGTTCTGTA TAAAAAAACATTTTTTTTTGTTCCGTGCAACATACTTTGTGGGCCGTTTT GGACCTTTTGTTTTATTTTCGTGGCAGGTTGGATCTGCTGAGGCGTGGTC TTTCAAGAACACCGCCTTGGCCGCCCAGACGTTTATCCTGTCTTGCGAGG CCCACGGCCTGGCCACAGCACCAATGGAAGGCTTCGATGCTCGAAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8403:10964..11713-

>mRNA_M-pyrifera_M_contig8403.19603.1 ID=mRNA_M-pyrifera_M_contig8403.19603.1|Name=mRNA_M-pyrifera_M_contig8403.19603.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig8403:10964..11713- (Macrocystis pyrifera P11B4 male)
CAGTTTTCACTTGCGGTGAATCTGTTCAGCGGCGAAGGAGCCGTCGGCAA
CGTGGTGCGGAACGCTGTCACCAGCATGGCGTCTCCAATGCAGCCAGCGC
CCGAGCAGTTTTCACTTGCGGTGAATCTGTTCAGCGGCGAAGGAGCCGTC
GGCAACGTGGTGCGGAACGCTGTCACCAGCATGGCGTCTCCAATGCAGCC
AGCGCCCGAGGTTGGATCTGCTGAGGCGTGGTCTTTCAAGAACACCGCCT
TGGCCGCCCAGACGTTTATCCTGTCTTGCGAGGCCCACGGCCTGGCCACA
GCACCAATGGAAGGCTTCGATGCTCGAAGGTGAGTTGGATCTGCTGAGGC
GTGGTCTTTCAAGAACACCGCCTTGGCCGCCCAGACGTTTATCCTGTCTT
GCGAGGCCCACGGCCTGGCCACAGCACCAATGGAAGGCTTCGATGCTCGA
AGGTGA
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