mRNA_M-pyrifera_M_contig84007.19600.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84007.19600.1
Unique NamemRNA_M-pyrifera_M_contig84007.19600.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig84007.19600.1 vs. uniprot
Match: UPI0019A8EF15 (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A8EF15)

HSP 1 Score: 124 bits (312), Expect = 2.260e-33
Identity = 68/151 (45.03%), Postives = 92/151 (60.93%), Query Frame = 1 
Query:   10 KVSPGQKLASSPLRKASVINDVVDAANDYKQRRLGGPSQVNYGTIATDTVRVQNSSGGDLVAGSVLQLGDYLLDALDRRNIWFNADTPTDE--ERFVVLGVPLADGGIGIAHIAGACIARVDVGDTDHTRAYPEASSNVLTSGLFGQAKIL 456
            K  PG+ L + P+  AS  N +VD  + YK++ LG P +     I TD ++V+N SG D  AG VL++G  +L  LDRRNIWFNADT +      + VL  P+  G I  AHI+G C+A+V++  T    A+ EASSNVL SG  GQ K+L
Sbjct:    2 KAVPGKPLITGPIGSASFQNTLVDMVDWYKRKVLGDPQRAPPAPIPTDVIKVKNVSGADRSAGQVLEIGTLVLTTLDRRNIWFNADTISHSVGRSYCVLPRPIPSGEIDDAHISGVCVAKVNIIATTDRYAFVEASSNVLKSGKTGQFKLL 152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84007.19600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019A8EF152.260e-3345.03Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84007contigM-pyrifera_M_contig84007:365..871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.4107761-CDS-M-pyrifera_M_contig84007:364..8711622816747.4107761-CDS-M-pyrifera_M_contig84007:364..871Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84007 365..871 -
1692278154.328971-CDS-M-pyrifera_M_contig84007:364..8711692278154.328971-CDS-M-pyrifera_M_contig84007:364..871Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84007 365..871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84007.19600.1prot_M-pyrifera_M_contig84007.19600.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84007 365..871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84007.19600.1

>prot_M-pyrifera_M_contig84007.19600.1 ID=prot_M-pyrifera_M_contig84007.19600.1|Name=mRNA_M-pyrifera_M_contig84007.19600.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
MADKVSPGQKLASSPLRKASVINDVVDAANDYKQRRLGGPSQVNYGTIAT
DTVRVQNSSGGDLVAGSVLQLGDYLLDALDRRNIWFNADTPTDEERFVVL
GVPLADGGIGIAHIAGACIARVDVGDTDHTRAYPEASSNVLTSGLFGQAK
ILSELTSTGEQDVAILIDH
back to top

mRNA from alignment at M-pyrifera_M_contig84007:365..871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84007.19600.1 ID=mRNA_M-pyrifera_M_contig84007.19600.1|Name=mRNA_M-pyrifera_M_contig84007.19600.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig84007:365..871- (Macrocystis pyrifera P11B4 male)
ATGGCAGATAAAGTCAGTCCCGGTCAAAAGCTTGCATCCTCACCCCTGCG
CAAGGCCAGCGTTATCAATGACGTAGTGGATGCAGCCAACGACTACAAGC
AGAGGCGATTAGGCGGACCATCGCAGGTTAATTACGGCACCATCGCAACT
GACACCGTGAGGGTCCAGAACAGCAGCGGCGGCGACCTGGTTGCGGGAAG
CGTTCTGCAATTGGGGGATTACCTCTTAGATGCTTTGGACCGGCGAAATA
TCTGGTTCAATGCGGACACGCCAACGGATGAAGAGCGGTTTGTCGTGCTG
GGGGTTCCGCTGGCTGATGGTGGAATTGGGATTGCTCATATCGCGGGGGC
TTGCATTGCTCGGGTTGACGTGGGGGACACGGACCACACTCGAGCTTATC
CAGAGGCCAGCAGCAATGTGCTGACGTCGGGGTTATTTGGGCAAGCAAAA
ATACTGTCAGAACTAACATCAACGGGCGAGCAGGATGTCGCGATACTAAT
TGACCAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84007:365..871-

>mRNA_M-pyrifera_M_contig84007.19600.1 ID=mRNA_M-pyrifera_M_contig84007.19600.1|Name=mRNA_M-pyrifera_M_contig84007.19600.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig84007:365..871- (Macrocystis pyrifera P11B4 male)
ATGGCAGATAAAGTCAGTCCCGGTCAAAAGCTTGCATCCTCACCCCTGCG
CAAGGCCAGCGTTATCAATGACGTAGTGGATGCAGCCAACGACTACAAGC
AGAGGCGATTAGGCGGACCATCGCAGGTTAATTACGGCACCATCGCAACT
GACACCGTGAGGGTCCAGAACAGCAGCGGCGGCGACCTGGTTGCGGGAAG
CGTTCTGCAATTGGGGGATTACCTCTTAGATGCTTTGGACCGGCGAAATA
TCTGGTTCAATGCGGACACGCCAACGGATGAAGAGCGGTTTGTCGTGCTG
GGGGTTCCGCTGGCTGATGGTGGAATTGGGATTGCTCATATCGCGGGGGC
TTGCATTGCTCGGGTTGACGTGGGGGACACGGACCACACTCGAGCTTATC
CAGAGGCCAGCAGCAATGTGCTGACGTCGGGGTTATTTGGGCAAGCAAAA
ATACTGTCAGAACTAACATCAACGGGCGAGCAGGATGTCGCGATACTAAT
TGACCACATGGCAGATAAAGTCAGTCCCGGTCAAAAGCTTGCATCCTCAC
CCCTGCGCAAGGCCAGCGTTATCAATGACGTAGTGGATGCAGCCAACGAC
TACAAGCAGAGGCGATTAGGCGGACCATCGCAGGTTAATTACGGCACCAT
CGCAACTGACACCGTGAGGGTCCAGAACAGCAGCGGCGGCGACCTGGTTG
CGGGAAGCGTTCTGCAATTGGGGGATTACCTCTTAGATGCTTTGGACCGG
CGAAATATCTGGTTCAATGCGGACACGCCAACGGATGAAGAGCGGTTTGT
CGTGCTGGGGGTTCCGCTGGCTGATGGTGGAATTGGGATTGCTCATATCG
CGGGGGCTTGCATTGCTCGGGTTGACGTGGGGGACACGGACCACACTCGA
GCTTATCCAGAGGCCAGCAGCAATGTGCTGACGTCGGGGTTATTTGGGCA
AGCAAAAATACTGTCAGAACTAACATCAACGGGCGAGCAGGATGTCGCGA
TACTAATTGACCAC
back to top