mRNA_M-pyrifera_M_contig84004.19599.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84004.19599.1
Unique NamemRNA_M-pyrifera_M_contig84004.19599.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A8J5FUY6_ZINOF (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FUY6_ZINOF)

HSP 1 Score: 85.5 bits (210), Expect = 1.490e-19
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   49 IKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            IK++VLFFAR+RDLT V E  LE+ D ST G     L+ +FP+L  +       VL++N EYA ES++L+  DE+A+IPP+SGG
Sbjct:   27 IKIKVLFFARARDLTGVSETSLEMPDGSTAGDCMRNLLVKFPSLQEIYNS---MVLAINEEYAAESTLLTSKDELAIIPPISGG 107
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BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A8B8JLV4_ABRPR (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JLV4_ABRPR)

HSP 1 Score: 83.6 bits (205), Expect = 7.640e-19
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   25 HSNLSTPMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            HS   + M+K++VLFFAR+RDLT + E+ LEV   ST       L+T FP+L  + RG    VL+LN EY  ES+++   DE+A+IPP+SGG
Sbjct:   15 HSKKESSMVKIKVLFFARARDLTGLSEMPLEVSSGSTTHDCLKKLLTNFPSLEEI-RG--CMVLALNEEYTTESAIVKDTDELAIIPPISGG 103
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BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: I3T2W6_LOTJA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3T2W6_LOTJA)

HSP 1 Score: 82.4 bits (202), Expect = 2.180e-18
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   22 LHSNLSTPMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            +HS   + ++K++VLFFAR+RDLT + E+ LEV   ST       L+ +FP+L  +   +   VL+LN EY  ES+++   DE+A+IPP+SGG
Sbjct:   14 MHSKKESALVKIKVLFFARARDLTGLSEVPLEVTSGSTTRDCLKKLLAQFPSLEEI---QGCMVLALNEEYTTESTIVKDTDELAIIPPISGG 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A6P5GRX2_ANACO (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GRX2_ANACO)

HSP 1 Score: 83.2 bits (204), Expect = 2.450e-18
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   49 IKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            I+++VLFFAR+RDLT + E  +E+ + ST G     L+T+FP L  +    +  VL+LN EYA ES+VL   DE+A+IPP+SGG
Sbjct:   54 IEIKVLFFARARDLTGLSETSIELPEGSTAGDCMSKLLTKFPNLEEI---SNSMVLALNEEYAPESTVLKNRDELAIIPPISGG 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A8J5F8M5_ZINOF (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F8M5_ZINOF)

HSP 1 Score: 85.5 bits (210), Expect = 4.100e-18
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   49 IKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            IK++VLFFAR+RDLT V E  LE+ D ST G     L+ +FP+L  +       VL++N EYA ES++L+  DE+A+IPP+SGG
Sbjct:  176 IKIKVLFFARARDLTGVSETSLEMPDGSTAGDCMRNLLVKFPSLQEIYNS---MVLAINEEYAAESTLLTSKDELAIIPPISGG 256
[Close]
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A2I4G4U9_JUGRE (Molybdopterin synthase sulfur carrier subunit n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4G4U9_JUGRE)

HSP 1 Score: 81.3 bits (199), Expect = 6.550e-18
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   43 PMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            P +K++VLFFAR+RDLT + E+ LEV   S+     + L+ RFP L  +       VL+LN EY  ES+++ + DE+A+IPP+SGG
Sbjct:   23 PSVKIKVLFFARARDLTSLTEMPLEVPSGSSADDCLNDLVARFPGLEEI---RECMVLALNEEYTTESTIVKEKDELAIIPPISGG 105
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BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A5P1FG10_ASPOF (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FG10_ASPOF)

HSP 1 Score: 81.3 bits (199), Expect = 6.720e-18
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   46 MIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            +I+++VLFFAR+RDLT   EI L++   ST G     L+T+FP L  +       VL+LN EYA E++VL   DE+A+IPP+SGG
Sbjct:   25 LIEIKVLFFARARDLTGSKEIPLKLPAGSTAGDCMSKLLTQFPQLGEIYNS---VVLALNEEYAPETAVLKNKDELAIIPPISGG 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A7C9CUX5_OPUST (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CUX5_OPUST)

HSP 1 Score: 80.9 bits (198), Expect = 8.570e-18
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   25 HSNLSTPMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            H      ++K++VLFFAR+RDLT + E+ LEV   +T     D L+T FP L  + RG    VL+LN EYA ES+++   DE+A+IPP+SGG
Sbjct:   14 HEMSEKSLVKLKVLFFARARDLTGLTEMPLEVTSGTTAHGCLDKLVTLFPGLEEI-RG--CMVLALNEEYASESAIVKDKDELAIIPPISGG 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A4S8K7D7_MUSBA (Molybdopterin synthase sulfur carrier subunit n=4 Tax=Musaceae TaxID=4637 RepID=A0A4S8K7D7_MUSBA)

HSP 1 Score: 80.9 bits (198), Expect = 1.030e-17
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   43 PMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            P IK++VLFFAR+RDLT   E+ LE+ D ST     + L+  FP L  +       VL+LN EYA ES++L   DE+A+IPP+SGG
Sbjct:   27 PYIKIKVLFFARARDLTGSTELCLEMPDGSTARDCMNKLLIEFPNLREIYNS---MVLALNEEYAPESTILRNKDELAIIPPISGG 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Match: A0A2I0VXW9_9ASPA (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VXW9_9ASPA)

HSP 1 Score: 80.9 bits (198), Expect = 1.210e-17
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   37 STPMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQDTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG 300
            S P +K+ VLFFA++R++T +P+I L+V   S+ G     L+T+FP L  +       V +LN EYA +S +L   DE+A+IPP+SGG
Sbjct:   31 SEPSVKIEVLFFAKAREITGLPDISLQVPPSSSAGDCLKILLTKFPRLEEICNS---IVFALNEEYAPDSIILKNGDELAIIPPISGG 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84004.19599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5FUY6_ZINOF1.490e-1950.00Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A8B8JLV4_ABRPR7.640e-1947.83Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
I3T2W6_LOTJA2.180e-1843.01Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A6P5GRX2_ANACO2.450e-1848.81Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A8J5F8M5_ZINOF4.100e-1850.00Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A2I4G4U9_JUGRE6.550e-1845.35Molybdopterin synthase sulfur carrier subunit n=3 ... [more]
A0A5P1FG10_ASPOF6.720e-1848.24Molybdopterin synthase sulfur carrier subunit n=2 ... [more]
A0A7C9CUX5_OPUST8.570e-1846.74Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A4S8K7D7_MUSBA1.030e-1748.84Molybdopterin synthase sulfur carrier subunit n=4 ... [more]
A0A2I0VXW9_9ASPA1.210e-1743.18Molybdopterin synthase sulfur carrier subunit n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84004contigM-pyrifera_M_contig84004:507..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog4006.Lus10030343
Preferred nameCNX7
KEGG rclassRC02507
KEGG koko:K03635,ko:K21232
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0006464,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0018315,GO:0019538,GO:0023052,GO:0032870,GO:0036211,GO:0042040,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:1901564
EggNOG free text desc.Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin
EggNOG OGs37WD6@33090,3GKBW@35493,4JQI8@91835,KOG3474@1,KOG3474@2759
EC2.8.1.12
COG Functional cat.C
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.3787725-CDS-M-pyrifera_M_contig84004:506..8091622816747.3787725-CDS-M-pyrifera_M_contig84004:506..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84004 507..809 +
1692278154.313637-CDS-M-pyrifera_M_contig84004:506..8091692278154.313637-CDS-M-pyrifera_M_contig84004:506..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84004 507..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84004.19599.1prot_M-pyrifera_M_contig84004.19599.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84004 507..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84004.19599.1

>prot_M-pyrifera_M_contig84004.19599.1 ID=prot_M-pyrifera_M_contig84004.19599.1|Name=mRNA_M-pyrifera_M_contig84004.19599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MTYIIFQLHSNLSTPMIKVRVLFFARSRDLTKVPEIELEVKDDSTLGSIQ
DTLITRFPALSALLRGESRAVLSLNGEYAEESSVLSKDDEIAVIPPVSGG
*
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mRNA from alignment at M-pyrifera_M_contig84004:507..809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84004.19599.1 ID=mRNA_M-pyrifera_M_contig84004.19599.1|Name=mRNA_M-pyrifera_M_contig84004.19599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig84004:507..809+ (Macrocystis pyrifera P11B4 male)
ATGACCTACATAATATTCCAACTCCATTCGAACCTCAGCACTCCAATGAT
CAAAGTACGAGTATTGTTTTTCGCGCGTTCCAGAGACCTTACTAAAGTTC
CTGAGATTGAACTTGAAGTAAAAGACGATAGTACTCTTGGTAGTATTCAA
GACACATTGATTACTCGTTTCCCTGCGCTGTCAGCATTGCTTCGTGGTGA
AAGTCGAGCTGTGCTCTCCCTCAACGGGGAATACGCGGAGGAGAGTAGTG
TTCTATCAAAGGACGACGAAATTGCAGTGATTCCACCTGTGAGTGGTGGG
TAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84004:507..809+

>mRNA_M-pyrifera_M_contig84004.19599.1 ID=mRNA_M-pyrifera_M_contig84004.19599.1|Name=mRNA_M-pyrifera_M_contig84004.19599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig84004:507..809+ (Macrocystis pyrifera P11B4 male)
ATGACCTACATAATATTCCAACTCCATTCGAACCTCAGCACTCCAATGAT
CAAAGTACGAGTATTGTTTTTCGCGCGTTCCAGAGACCTTACTAAAGTTC
CTGAGATTGAACTTGAAGTAAAAGACGATAGTACTCTTGGTAGTATTCAA
GACACATTGATTACTCGTTTCCCTGCGCTGTCAGCATTGCTTCGTGGTGA
AAGTCGAGCTGTGCTCTCCCTCAACGGGGAATACGCGGAGGAGAGTAGTG
TTCTATCAAAGGACGACGAAATTGCAGTGATTCCACCTGTGAGTGGTGGG
TAGATGACCTACATAATATTCCAACTCCATTCGAACCTCAGCACTCCAAT
GATCAAAGTACGAGTATTGTTTTTCGCGCGTTCCAGAGACCTTACTAAAG
TTCCTGAGATTGAACTTGAAGTAAAAGACGATAGTACTCTTGGTAGTATT
CAAGACACATTGATTACTCGTTTCCCTGCGCTGTCAGCATTGCTTCGTGG
TGAAAGTCGAGCTGTGCTCTCCCTCAACGGGGAATACGCGGAGGAGAGTA
GTGTTCTATCAAAGGACGACGAAATTGCAGTGATTCCACCTGTGAGTGGT
GGGTAG
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