mRNA_M-pyrifera_M_contig84000.19598.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84000.19598.1
Unique NamemRNA_M-pyrifera_M_contig84000.19598.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84000.19598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84000contigM-pyrifera_M_contig84000:146..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.3326676-CDS-M-pyrifera_M_contig84000:145..2351622816747.3326676-CDS-M-pyrifera_M_contig84000:145..235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84000 146..235 -
1692278154.289054-CDS-M-pyrifera_M_contig84000:145..2351692278154.289054-CDS-M-pyrifera_M_contig84000:145..235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84000 146..235 -
1622816747.3437073-CDS-M-pyrifera_M_contig84000:340..5081622816747.3437073-CDS-M-pyrifera_M_contig84000:340..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84000 341..508 -
1692278154.3031063-CDS-M-pyrifera_M_contig84000:340..5081692278154.3031063-CDS-M-pyrifera_M_contig84000:340..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84000 341..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84000.19598.1prot_M-pyrifera_M_contig84000.19598.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84000 146..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84000.19598.1

>prot_M-pyrifera_M_contig84000.19598.1 ID=prot_M-pyrifera_M_contig84000.19598.1|Name=mRNA_M-pyrifera_M_contig84000.19598.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
KRRIHGRKGLKFVEKGVFSRAGEEMRKELAEEEQKRAVRRGKTAMHPIKH
MGLDRKLPAGSVQSSPLGLLSCVPDLEWWDVALLPQ
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mRNA from alignment at M-pyrifera_M_contig84000:146..508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84000.19598.1 ID=mRNA_M-pyrifera_M_contig84000.19598.1|Name=mRNA_M-pyrifera_M_contig84000.19598.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig84000:146..508- (Macrocystis pyrifera P11B4 male)
AAGAGGCGCATTCATGGACGCAAAGGGTTGAAGTTTGTGGAGAAAGGGGT
GTTTTCGCGGGCAGGGGAAGAGATGCGTAAGGAACTGGCGGAAGAAGAGC
AGAAGCGCGCGGTTCGACGAGGAAAGACAGCAATGCACCCTATCAAGCAC
ATGGGCTTGGATCGAAAGGTGGCGCGGGAGGAGGAAGGGGGTGGTTTGAG
TGGGAAGGGGGAGGTGGATGGGGTGATAGAGGATGCCACGCTGCGAAAAG
GAGCAGCAGCTCTTGGAATCGAGCTTCCTGCTGGAAGTGTGCAATCGTCA
CCGCTGGGATTGCTCTCTTGTGTGCCTGACCTCGAGTGGTGGGATGTGGC
GTTGCTTCCACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84000:146..508-

>mRNA_M-pyrifera_M_contig84000.19598.1 ID=mRNA_M-pyrifera_M_contig84000.19598.1|Name=mRNA_M-pyrifera_M_contig84000.19598.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig84000:146..508- (Macrocystis pyrifera P11B4 male)
AAGAGGCGCATTCATGGACGCAAAGGGTTGAAGTTTGTGGAGAAAGGGGT
GTTTTCGCGGGCAGGGGAAGAGATGCGTAAGGAACTGGCGGAAGAAGAGC
AGAAGCGCGCGGTTCGACGAGGAAAGACAGCAATGCACCCTATCAAGCAC
ATGGGCTTGGATCGAAAGAAGAGGCGCATTCATGGACGCAAAGGGTTGAA
GTTTGTGGAGAAAGGGGTGTTTTCGCGGGCAGGGGAAGAGATGCGTAAGG
AACTGGCGGAAGAAGAGCAGAAGCGCGCGGTTCGACGAGGAAAGACAGCA
ATGCACCCTATCAAGCACATGGGCTTGGATCGAAAGCTTCCTGCTGGAAG
TGTGCAATCGTCACCGCTGGGATTGCTCTCTTGTGTGCCTGACCTCGAGT
GGTGGGATGTGGCGTTGCTTCCACAGCTTCCTGCTGGAAGTGTGCAATCG
TCACCGCTGGGATTGCTCTCTTGTGTGCCTGACCTCGAGTGGTGGGATGT
GGCGTTGCTTCCACAG
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