mRNA_M-pyrifera_M_contig8400.19597.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8400.19597.1
Unique NamemRNA_M-pyrifera_M_contig8400.19597.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8400.19597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8400contigM-pyrifera_M_contig8400:2207..2734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.2873664-UTR-M-pyrifera_M_contig8400:2206..24281622816747.2873664-UTR-M-pyrifera_M_contig8400:2206..2428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8400 2207..2428 +
1692278154.2679112-UTR-M-pyrifera_M_contig8400:2206..24281692278154.2679112-UTR-M-pyrifera_M_contig8400:2206..2428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8400 2207..2428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.2983403-CDS-M-pyrifera_M_contig8400:2428..27341622816747.2983403-CDS-M-pyrifera_M_contig8400:2428..2734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8400 2429..2734 +
1692278154.2796648-CDS-M-pyrifera_M_contig8400:2428..27341692278154.2796648-CDS-M-pyrifera_M_contig8400:2428..2734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8400 2429..2734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8400.19597.1prot_M-pyrifera_M_contig8400.19597.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8400 2429..2734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8400.19597.1

>prot_M-pyrifera_M_contig8400.19597.1 ID=prot_M-pyrifera_M_contig8400.19597.1|Name=mRNA_M-pyrifera_M_contig8400.19597.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MDTASSTTPWSHSGQNQRNNTKTAPSVVSLPVSPVTPETPTRISLLPPRE
INYSFRNTTAMETATTKHNNRTKQIKNTYSYVLLIFIVVIRTDQKRIEKR
GL
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mRNA from alignment at M-pyrifera_M_contig8400:2207..2734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8400.19597.1 ID=mRNA_M-pyrifera_M_contig8400.19597.1|Name=mRNA_M-pyrifera_M_contig8400.19597.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig8400:2207..2734+ (Macrocystis pyrifera P11B4 male)
CCCTGGTTGTCTAGCTCACGCATCATACGGAGGGGGGGCAATAGACCAAA
CAGGCACGCATGCAGGCGTATCTGCGCCACGTATTTTATTTGCCGCTCGT
GTTGTTTTGTGAAAAAGTAGCACCATTATTAAGTATCCCAGTAGTAATAC
AATAATTAGAACCTGACTGGGTGTATTGAAAAGGCCACGTCCCCATGATC
CATATCATCGTCACGTAGCGGGATGGACACAGCAAGCAGCACTACCCCAT
GGTCACACAGCGGCCAAAATCAACGAAATAACACGAAAACGGCTCCCTCC
GTTGTATCACTGCCTGTATCGCCCGTGACACCAGAAACGCCTACCAGGAT
ATCTCTGTTGCCACCGCGAGAAATTAACTACTCCTTCCGCAACACTACAG
CAATGGAAACAGCGACAACAAAACATAACAATAGAACGAAACAAATTAAA
AACACGTACTCATACGTACTACTGATATTTATTGTCGTAATTCGGACTGA
TCAGAAACGGATTGAAAAAAGGGGACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8400:2207..2734+

>mRNA_M-pyrifera_M_contig8400.19597.1 ID=mRNA_M-pyrifera_M_contig8400.19597.1|Name=mRNA_M-pyrifera_M_contig8400.19597.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig8400:2207..2734+ (Macrocystis pyrifera P11B4 male)
ATGGACACAGCAAGCAGCACTACCCCATGGTCACACAGCGGCCAAAATCA
ACGAAATAACACGAAAACGGCTCCCTCCGTTGTATCACTGCCTGTATCGC
CCGTGACACCAGAAACGCCTACCAGGATATCTCTGTTGCCACCGCGAGAA
ATTAACTACTCCTTCCGCAACACTACAGCAATGGAAACAGCGACAACAAA
ACATAACAATAGAACGAAACAAATTAAAAACACGTACTCATACGTACTAC
TGATATTTATTGTCGTAATTCGGACTGATCAGAAACGGATTGAAAAAAGG
GGACTGATGGACACAGCAAGCAGCACTACCCCATGGTCACACAGCGGCCA
AAATCAACGAAATAACACGAAAACGGCTCCCTCCGTTGTATCACTGCCTG
TATCGCCCGTGACACCAGAAACGCCTACCAGGATATCTCTGTTGCCACCG
CGAGAAATTAACTACTCCTTCCGCAACACTACAGCAATGGAAACAGCGAC
AACAAAACATAACAATAGAACGAAACAAATTAAAAACACGTACTCATACG
TACTACTGATATTTATTGTCGTAATTCGGACTGATCAGAAACGGATTGAA
AAAAGGGGACTG
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