mRNA_M-pyrifera_M_contig83999.19596.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A2E3MGJ0_9GAMM (Lipid A export permease/ATP-binding protein MsbA n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MGJ0_9GAMM) HSP 1 Score: 363 bits (932), Expect = 1.960e-119 Identity = 191/277 (68.95%), Postives = 220/277 (79.42%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ-PHETLVEELVE 828 IF+L+D+P E D G + +DRV GD+ K + F Y + NVLENISF +S+G T+A VGRSGSGKSTL NLLPRFYD G I IDG D KL +LR+QFA+V+Q VTLFNDT+ NNIAYGRL D+V+D I AA AAHAMEFI ++P GL TLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALE VM+NRTTLVIAHRLSTIENAD+I+VLD+G +VE GTHS+LL G YA+ H LQF+ P +V L E Sbjct: 325 IFELIDEPAERDTGTLELDRVHGDIIYKDVGFSYNQSNGNVLENISFTVSSGKTIAFVGRSGSGKSTLVNLLPRFYDHDTGTITIDGNDVNDIKLSSLRQQFALVTQHVTLFNDTIANNIAYGRLGDDVTDADIEQAAKAAHAMEFIQELPEGLHTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALEEVMRNRTTLVIAHRLSTIENADQIVVLDKGHIVETGTHSELLAKEGHYAKLHRLQFKDPRAAIVNPLGE 601
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: UPI0012BBAEF7 (lipid A export permease/ATP-binding protein MsbA n=1 Tax=Sansalvadorimonas verongulae TaxID=2172824 RepID=UPI0012BBAEF7) HSP 1 Score: 343 bits (879), Expect = 2.340e-111 Identity = 173/275 (62.91%), Postives = 222/275 (80.73%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPHETLVEELV 825 +F+LVD+ E D+G +++DRV+G +E K + F YP D L++ISF + G T+ALVGRSGSGK+TLA+LLPRFY+ G+I +DG+ +++L+NLR+Q A+V+QQV+LFNDT+ NNIAYG LRD DD IR AA +A AMEFI+ MP G +TL+GENGVLLSGGQRQR+AIARAILKDAP+LILDEATSALDTESERHIQ+AL+ +M+NRTTLVIAHRLSTIENAD I+V+D+G ++E GTHS+LL +G YAR H LQF+ V E++ Sbjct: 338 VFELVDEDTEKDDGTLAVDRVQGALEFKNLTFTYPNADSPALKDISFTVKPGETIALVGRSGSGKTTLASLLPRFYNYDSGDILLDGQPIGNYRLKNLRKQIALVNQQVSLFNDTVSNNIAYGDLRDTEEDD-IRLAARSAFAMEFIENMPEGFNTLVGENGVLLSGGQRQRLAIARAILKDAPLLILDEATSALDTESERHIQSALDNIMKNRTTLVIAHRLSTIENADRILVMDKGRILESGTHSELLARDGAYARLHHLQFEEQAETVTEII 611
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A0D6T0U0_9PSED (Lipid A export ATP-binding/permease protein MsbA n=7 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0D6T0U0_9PSED) HSP 1 Score: 327 bits (837), Expect = 7.810e-109 Identity = 168/265 (63.40%), Postives = 213/265 (80.38%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795 IF+ +D+ EID G + +RV+G +E++ +NF+YPG +K VL++ISF G VALVGRSGSGKSTLANL+PRFY ++GE+ +DG +D++L+NLR A+V+Q VTLFNDT+ NNIAYG L +D ++ AA AA A EFI+KMP G DTL+GENGVLLSGGQRQR+AIARA+LK+AP+LILDEATSALDTESERHIQAAL+ VM+ RTTLVIAHRLSTIE AD I+V+D+G +VE+GTH +LL NG+YAR H QF+ Sbjct: 50 IFEQLDEEPEIDRGTVERERVEGRLEVRHLNFQYPGSEKPVLDDISFVAEPGQMVALVGRSGSGKSTLANLIPRFYHHENGEVLLDGVEIEDYRLRNLRRHIALVTQHVTLFNDTVTNNIAYGDLAGAPLED-VKAAAEAAFAAEFIEKMPQGYDTLVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHRELLSLNGYYARLHAKQFE 313
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A1G0G0Q7_9GAMM (Lipid A export permease/ATP-binding protein MsbA n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_35_23 TaxID=1798274 RepID=A0A1G0G0Q7_9GAMM) HSP 1 Score: 333 bits (855), Expect = 5.270e-108 Identity = 175/274 (63.87%), Postives = 214/274 (78.10%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPHETLVEEL 822 +F L+D E D G + + RVKGD+ K +NF YPG DK VL N+SF + +G T+ALVGRSGSGKSTL NLLPRFYD + G I IDG ++ L++LR Q AIVSQ VTLFNDT+ NNIAYG ++ + +++I +AA AA+A EFI ++PNG+ TLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESER+IQAALE +++NRTT+VIAHRLSTIENA+ I+V+ EG VVE GTH +LL N +YA+ H LQF + E L Sbjct: 319 VFALLDDETERDTGTLEVSRVKGDISYKCLNFVYPGTDKQVLFNVSFQVKSGETIALVGRSGSGKSTLVNLLPRFYDCKAGSINIDGVNINNYTLRSLRNQIAIVSQHVTLFNDTIANNIAYG-IKKDAPEEEIIEAAKAAYAWEFISQLPNGIHTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERYIQAALEKLIRNRTTIVIAHRLSTIENANRIVVMHEGCVVESGTHQELLAQNQYYAKLHALQFSDVKIAAEGL 591
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A6I1NLM4_9PSED (Lipid A export permease/ATP-binding protein MsbA n=2 Tax=Pseudomonas TaxID=286 RepID=A0A6I1NLM4_9PSED) HSP 1 Score: 334 bits (856), Expect = 5.630e-108 Identity = 172/265 (64.91%), Postives = 215/265 (81.13%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795 IF+ +D+P E+D+G + +RV+G +E++ ++++YP DK VL++ISF + G VALVGRSGSGKSTLA+L+PRFY Q G+I +DGE Q F L+NLR A+V+QQVTLFNDT+ NNIAYG L S +Q+R AA A+A EFI KMP G DTL+GE+GVLLSGGQRQRIAIARA+LKDAP+LILDEATSALDTESERHIQAAL+ V+ NRTTLVIAHRL+TIE AD I+V+DEG +VE+GTH+QLL NG+YAR H +FQ Sbjct: 329 IFEQLDEPAEVDDGTVEHERVEGRLEVRHLSYQYPDTDKRVLDDISFVVEPGQMVALVGRSGSGKSTLASLIPRFYQHQQGQILLDGEEIQSFTLRNLRRHIALVTQQVTLFNDTVSNNIAYGDLAG-ASAEQVRKAATEAYADEFIIKMPRGYDTLVGEDGVLLSGGQRQRIAIARALLKDAPLLILDEATSALDTESERHIQAALDHVVSNRTTLVIAHRLTTIEKADLILVMDEGRIVERGTHAQLLAQNGYYARLHAKEFQ 592
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A2A2FRL8_9PSED (Lipid A export permease/ATP-binding protein MsbA n=4 Tax=Pseudomonas TaxID=286 RepID=A0A2A2FRL8_9PSED) HSP 1 Score: 333 bits (854), Expect = 8.090e-108 Identity = 172/269 (63.94%), Postives = 214/269 (79.55%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPHET 807 IF+ +D+ E+D G + +RV+G VE++ ++F YPG DK VLE+I+F + G VALVGRSGSGKSTLA+L+PRFY G+I IDG +D++L+NLR+ A+V+Q VTLFND++ NIAYG L D + I AA AA+A EFI K+P GLDTL+GENGVLLSGGQRQR+AIARA+LKDAPILILDEATSALDTESERHIQAAL+ VMQ RTTLVIAHRLSTIE AD I+V+D+G +VEQG+H++LL NG+YAR H +QFQ T Sbjct: 325 IFEQLDEEPEVDHGTVERERVEGRVEVRNLSFSYPGTDKQVLEDINFTVEPGQMVALVGRSGSGKSTLASLIPRFYHHAAGKILIDGVDVEDYRLRNLRKHIALVTQHVTLFNDSIARNIAYGDLADAPRE-AIEAAAEAAYASEFIGKLPKGLDTLVGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDTESERHIQAALDRVMQGRTTLVIAHRLSTIEKADVIMVMDQGRIVEQGSHAELLARNGYYARLHSMQFQDETT 592
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: UPI0018AA5615 (lipid A export permease/ATP-binding protein MsbA n=3 Tax=Pseudomonas TaxID=286 RepID=UPI0018AA5615) HSP 1 Score: 333 bits (853), Expect = 1.590e-107 Identity = 173/265 (65.28%), Postives = 211/265 (79.62%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795 IF+ VD+P E+DEG + RV G +E++G++F YPG DK VL++ISF AG VALVGRSGSGKSTLANL+PRFY G+I +DGE Q ++L NLR A+V+Q VTLFNDT+ NNIAYG L + +I+ AA AA+A EFI++MP+G TL+GENGVLLSGGQRQR+AIARA+LKDAP+LILDEATSALDTESERHIQ AL+ VM+NRTTLVIAHRLSTIE AD I+V+DEG +VE+GTH +LL NG YAR H QF+ Sbjct: 329 IFEQVDEPAELDEGQLEPQRVSGRLEVRGLSFTYPGTDKQVLDDISFVAEAGQMVALVGRSGSGKSTLANLVPRFYQHSQGQILLDGEEIQRYRLHNLRRHTALVTQSVTLFNDTVANNIAYGDLAGAPLE-RIKRAAAAAYADEFIERMPDGYQTLVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQGALDEVMKNRTTLVIAHRLSTIEKADLILVMDEGRIVERGTHGELLARNGHYARLHARQFE 592
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: F3KG54_9GAMM (Lipid A export ATP-binding/permease protein MsbA n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KG54_9GAMM) HSP 1 Score: 325 bits (832), Expect = 3.510e-107 Identity = 165/264 (62.50%), Postives = 211/264 (79.92%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQF 792 IF+++D+ E+DEG ++ R KG +E+K + F+YPG D+N L NI+ I G TVA VGRSGSGK+TL NL+PRF ++ DG+I +D +D++L +LR Q AIV+QQV LF DT+ +NIAYG L VS+D I AA AAHAMEFI+K+P GL T +GE+GV+LSGGQRQR+A+ARAILKDAP+LILDEATSALDTESER+IQ AL VM+NRTTLVIAHRLSTIENAD+I+V+D+G++VE G+H QLL +G YA+ H LQF Sbjct: 119 IFEMMDEEAEVDEGATALQRAKGRLELKDVCFRYPGSDRNALNNINLTIEPGETVAFVGRSGSGKTTLVNLMPRFNNVSDGQIMLDDVPLEDYRLADLRRQVAIVNQQVVLFQDTVAHNIAYGDLAG-VSEDDIIQAATAAHAMEFIEKLPEGLQTQVGEDGVMLSGGQRQRLALARAILKDAPLLILDEATSALDTESERYIQQALNRVMKNRTTLVIAHRLSTIENADKIVVMDQGQIVEVGSHQQLLEKDGAYAQLHRLQF 381
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: M1FG87_9GAMM (Lipid A export ATP-binding/permease protein MsbA n=9 Tax=Marinobacter TaxID=2742 RepID=M1FG87_9GAMM) HSP 1 Score: 330 bits (847), Expect = 3.960e-107 Identity = 173/267 (64.79%), Postives = 207/267 (77.53%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPH 801 +F+ +D+ E D G + RVKGD+E + + F Y VL NIS + AG +VALVGRSGSGKSTL +LLPRFYD DGEIRIDG L +DF LQ LR Q A+V+Q V LFNDT+ NIAYG LRD S + IRDAA AHA+EFID+MP GL+T+IG+NGV+LSGGQRQR+AIARA+LKDAPILILDEATSALDTESER+IQ A+ETVM+ RTTLVIAHRLSTIENAD I+V+D G +VE G H +LL G YA+ H++QF H Sbjct: 298 VFETLDERPEPDSGIFAPQRVKGDIEFRDVGFSYRDQLDKVLNNISLTVPAGQSVALVGRSGSGKSTLVSLLPRFYDYTDGEIRIDGHLLEDFTLQALRAQIALVTQSVVLFNDTIAANIAYGALRD-CSPEAIRDAADKAHALEFIDRMPEGLNTMIGDNGVMLSGGQRQRLAIARALLKDAPILILDEATSALDTESERYIQNAMETVMKGRTTLVIAHRLSTIENADCILVMDNGRIVESGRHQELLDQGGAYAQLHQMQFSEH 563
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A3N4B740_9PSED (Lipid A export permease/ATP-binding protein MsbA n=4 Tax=root TaxID=1 RepID=A0A3N4B740_9PSED) HSP 1 Score: 330 bits (847), Expect = 8.850e-107 Identity = 166/265 (62.64%), Postives = 216/265 (81.51%), Query Frame = 1 Query: 1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795 +F+ +D+ E+D+G + DRV G ++IKG++F+YP +K VLE+I+F+I+ G VALVGRSGSGKSTLANL+PRFY GEI +DG + ++L+NLR A+VSQ VTLFNDT+ +NIAYG L + ++ AA AA+A EFID++P G DTL+GENGVLLSGGQRQR+AIARA+LKDAP+LILDEATSALDTESERHIQAAL+ VMQ RTTLVIAHRLSTIE AD I+V+D+G++VE+G+H++L+ NG+YAR H +QF+ Sbjct: 325 VFEQLDEEPELDQGTLERDRVSGQLDIKGLSFRYPDTEKQVLEDINFSIAPGQMVALVGRSGSGKSTLANLIPRFYHHDQGEILLDGVPIEQYRLRNLRHHMALVSQHVTLFNDTITSNIAYGDLAGAPME-AVKAAAEAAYAKEFIDQLPQGFDTLVGENGVLLSGGQRQRLAIARALLKDAPVLILDEATSALDTESERHIQAALDRVMQGRTTLVIAHRLSTIEKADIILVMDQGKIVERGSHAELMAQNGYYARLHSMQFE 588 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig83999.19596.1 >prot_M-pyrifera_M_contig83999.19596.1 ID=prot_M-pyrifera_M_contig83999.19596.1|Name=mRNA_M-pyrifera_M_contig83999.19596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISback to top mRNA from alignment at M-pyrifera_M_contig83999:54..884- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig83999.19596.1 ID=mRNA_M-pyrifera_M_contig83999.19596.1|Name=mRNA_M-pyrifera_M_contig83999.19596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=831bp|location=Sequence derived from alignment at M-pyrifera_M_contig83999:54..884- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig83999:54..884- >mRNA_M-pyrifera_M_contig83999.19596.1 ID=mRNA_M-pyrifera_M_contig83999.19596.1|Name=mRNA_M-pyrifera_M_contig83999.19596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig83999:54..884- (Macrocystis pyrifera P11B4 male)back to top |