mRNA_M-pyrifera_M_contig83999.19596.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83999.19596.1
Unique NamemRNA_M-pyrifera_M_contig83999.19596.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A2E3MGJ0_9GAMM (Lipid A export permease/ATP-binding protein MsbA n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MGJ0_9GAMM)

HSP 1 Score: 363 bits (932), Expect = 1.960e-119
Identity = 191/277 (68.95%), Postives = 220/277 (79.42%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ-PHETLVEELVE 828
            IF+L+D+P E D G + +DRV GD+  K + F Y   + NVLENISF +S+G T+A VGRSGSGKSTL NLLPRFYD   G I IDG    D KL +LR+QFA+V+Q VTLFNDT+ NNIAYGRL D+V+D  I  AA AAHAMEFI ++P GL TLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALE VM+NRTTLVIAHRLSTIENAD+I+VLD+G +VE GTHS+LL   G YA+ H LQF+ P   +V  L E
Sbjct:  325 IFELIDEPAERDTGTLELDRVHGDIIYKDVGFSYNQSNGNVLENISFTVSSGKTIAFVGRSGSGKSTLVNLLPRFYDHDTGTITIDGNDVNDIKLSSLRQQFALVTQHVTLFNDTIANNIAYGRLGDDVTDADIEQAAKAAHAMEFIQELPEGLHTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALEEVMRNRTTLVIAHRLSTIENADQIVVLDKGHIVETGTHSELLAKEGHYAKLHRLQFKDPRAAIVNPLGE 601          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: UPI0012BBAEF7 (lipid A export permease/ATP-binding protein MsbA n=1 Tax=Sansalvadorimonas verongulae TaxID=2172824 RepID=UPI0012BBAEF7)

HSP 1 Score: 343 bits (879), Expect = 2.340e-111
Identity = 173/275 (62.91%), Postives = 222/275 (80.73%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPHETLVEELV 825
            +F+LVD+  E D+G +++DRV+G +E K + F YP  D   L++ISF +  G T+ALVGRSGSGK+TLA+LLPRFY+   G+I +DG+   +++L+NLR+Q A+V+QQV+LFNDT+ NNIAYG LRD   DD IR AA +A AMEFI+ MP G +TL+GENGVLLSGGQRQR+AIARAILKDAP+LILDEATSALDTESERHIQ+AL+ +M+NRTTLVIAHRLSTIENAD I+V+D+G ++E GTHS+LL  +G YAR H LQF+     V E++
Sbjct:  338 VFELVDEDTEKDDGTLAVDRVQGALEFKNLTFTYPNADSPALKDISFTVKPGETIALVGRSGSGKTTLASLLPRFYNYDSGDILLDGQPIGNYRLKNLRKQIALVNQQVSLFNDTVSNNIAYGDLRDTEEDD-IRLAARSAFAMEFIENMPEGFNTLVGENGVLLSGGQRQRLAIARAILKDAPLLILDEATSALDTESERHIQSALDNIMKNRTTLVIAHRLSTIENADRILVMDKGRILESGTHSELLARDGAYARLHHLQFEEQAETVTEII 611          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A0D6T0U0_9PSED (Lipid A export ATP-binding/permease protein MsbA n=7 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0D6T0U0_9PSED)

HSP 1 Score: 327 bits (837), Expect = 7.810e-109
Identity = 168/265 (63.40%), Postives = 213/265 (80.38%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795
            IF+ +D+  EID G +  +RV+G +E++ +NF+YPG +K VL++ISF    G  VALVGRSGSGKSTLANL+PRFY  ++GE+ +DG   +D++L+NLR   A+V+Q VTLFNDT+ NNIAYG L     +D ++ AA AA A EFI+KMP G DTL+GENGVLLSGGQRQR+AIARA+LK+AP+LILDEATSALDTESERHIQAAL+ VM+ RTTLVIAHRLSTIE AD I+V+D+G +VE+GTH +LL  NG+YAR H  QF+
Sbjct:   50 IFEQLDEEPEIDRGTVERERVEGRLEVRHLNFQYPGSEKPVLDDISFVAEPGQMVALVGRSGSGKSTLANLIPRFYHHENGEVLLDGVEIEDYRLRNLRRHIALVTQHVTLFNDTVTNNIAYGDLAGAPLED-VKAAAEAAFAAEFIEKMPQGYDTLVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHRELLSLNGYYARLHAKQFE 313          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A1G0G0Q7_9GAMM (Lipid A export permease/ATP-binding protein MsbA n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_35_23 TaxID=1798274 RepID=A0A1G0G0Q7_9GAMM)

HSP 1 Score: 333 bits (855), Expect = 5.270e-108
Identity = 175/274 (63.87%), Postives = 214/274 (78.10%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPHETLVEEL 822
            +F L+D   E D G + + RVKGD+  K +NF YPG DK VL N+SF + +G T+ALVGRSGSGKSTL NLLPRFYD + G I IDG    ++ L++LR Q AIVSQ VTLFNDT+ NNIAYG ++ +  +++I +AA AA+A EFI ++PNG+ TLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESER+IQAALE +++NRTT+VIAHRLSTIENA+ I+V+ EG VVE GTH +LL  N +YA+ H LQF   +   E L
Sbjct:  319 VFALLDDETERDTGTLEVSRVKGDISYKCLNFVYPGTDKQVLFNVSFQVKSGETIALVGRSGSGKSTLVNLLPRFYDCKAGSINIDGVNINNYTLRSLRNQIAIVSQHVTLFNDTIANNIAYG-IKKDAPEEEIIEAAKAAYAWEFISQLPNGIHTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERYIQAALEKLIRNRTTIVIAHRLSTIENANRIVVMHEGCVVESGTHQELLAQNQYYAKLHALQFSDVKIAAEGL 591          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A6I1NLM4_9PSED (Lipid A export permease/ATP-binding protein MsbA n=2 Tax=Pseudomonas TaxID=286 RepID=A0A6I1NLM4_9PSED)

HSP 1 Score: 334 bits (856), Expect = 5.630e-108
Identity = 172/265 (64.91%), Postives = 215/265 (81.13%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795
            IF+ +D+P E+D+G +  +RV+G +E++ ++++YP  DK VL++ISF +  G  VALVGRSGSGKSTLA+L+PRFY  Q G+I +DGE  Q F L+NLR   A+V+QQVTLFNDT+ NNIAYG L    S +Q+R AA  A+A EFI KMP G DTL+GE+GVLLSGGQRQRIAIARA+LKDAP+LILDEATSALDTESERHIQAAL+ V+ NRTTLVIAHRL+TIE AD I+V+DEG +VE+GTH+QLL  NG+YAR H  +FQ
Sbjct:  329 IFEQLDEPAEVDDGTVEHERVEGRLEVRHLSYQYPDTDKRVLDDISFVVEPGQMVALVGRSGSGKSTLASLIPRFYQHQQGQILLDGEEIQSFTLRNLRRHIALVTQQVTLFNDTVSNNIAYGDLAG-ASAEQVRKAATEAYADEFIIKMPRGYDTLVGEDGVLLSGGQRQRIAIARALLKDAPLLILDEATSALDTESERHIQAALDHVVSNRTTLVIAHRLTTIEKADLILVMDEGRIVERGTHAQLLAQNGYYARLHAKEFQ 592          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A2A2FRL8_9PSED (Lipid A export permease/ATP-binding protein MsbA n=4 Tax=Pseudomonas TaxID=286 RepID=A0A2A2FRL8_9PSED)

HSP 1 Score: 333 bits (854), Expect = 8.090e-108
Identity = 172/269 (63.94%), Postives = 214/269 (79.55%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPHET 807
            IF+ +D+  E+D G +  +RV+G VE++ ++F YPG DK VLE+I+F +  G  VALVGRSGSGKSTLA+L+PRFY    G+I IDG   +D++L+NLR+  A+V+Q VTLFND++  NIAYG L D   +  I  AA AA+A EFI K+P GLDTL+GENGVLLSGGQRQR+AIARA+LKDAPILILDEATSALDTESERHIQAAL+ VMQ RTTLVIAHRLSTIE AD I+V+D+G +VEQG+H++LL  NG+YAR H +QFQ   T
Sbjct:  325 IFEQLDEEPEVDHGTVERERVEGRVEVRNLSFSYPGTDKQVLEDINFTVEPGQMVALVGRSGSGKSTLASLIPRFYHHAAGKILIDGVDVEDYRLRNLRKHIALVTQHVTLFNDSIARNIAYGDLADAPRE-AIEAAAEAAYASEFIGKLPKGLDTLVGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDTESERHIQAALDRVMQGRTTLVIAHRLSTIEKADVIMVMDQGRIVEQGSHAELLARNGYYARLHSMQFQDETT 592          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: UPI0018AA5615 (lipid A export permease/ATP-binding protein MsbA n=3 Tax=Pseudomonas TaxID=286 RepID=UPI0018AA5615)

HSP 1 Score: 333 bits (853), Expect = 1.590e-107
Identity = 173/265 (65.28%), Postives = 211/265 (79.62%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795
            IF+ VD+P E+DEG +   RV G +E++G++F YPG DK VL++ISF   AG  VALVGRSGSGKSTLANL+PRFY    G+I +DGE  Q ++L NLR   A+V+Q VTLFNDT+ NNIAYG L     + +I+ AA AA+A EFI++MP+G  TL+GENGVLLSGGQRQR+AIARA+LKDAP+LILDEATSALDTESERHIQ AL+ VM+NRTTLVIAHRLSTIE AD I+V+DEG +VE+GTH +LL  NG YAR H  QF+
Sbjct:  329 IFEQVDEPAELDEGQLEPQRVSGRLEVRGLSFTYPGTDKQVLDDISFVAEAGQMVALVGRSGSGKSTLANLVPRFYQHSQGQILLDGEEIQRYRLHNLRRHTALVTQSVTLFNDTVANNIAYGDLAGAPLE-RIKRAAAAAYADEFIERMPDGYQTLVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQGALDEVMKNRTTLVIAHRLSTIEKADLILVMDEGRIVERGTHGELLARNGHYARLHARQFE 592          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: F3KG54_9GAMM (Lipid A export ATP-binding/permease protein MsbA n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KG54_9GAMM)

HSP 1 Score: 325 bits (832), Expect = 3.510e-107
Identity = 165/264 (62.50%), Postives = 211/264 (79.92%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQF 792
            IF+++D+  E+DEG  ++ R KG +E+K + F+YPG D+N L NI+  I  G TVA VGRSGSGK+TL NL+PRF ++ DG+I +D    +D++L +LR Q AIV+QQV LF DT+ +NIAYG L   VS+D I  AA AAHAMEFI+K+P GL T +GE+GV+LSGGQRQR+A+ARAILKDAP+LILDEATSALDTESER+IQ AL  VM+NRTTLVIAHRLSTIENAD+I+V+D+G++VE G+H QLL  +G YA+ H LQF
Sbjct:  119 IFEMMDEEAEVDEGATALQRAKGRLELKDVCFRYPGSDRNALNNINLTIEPGETVAFVGRSGSGKTTLVNLMPRFNNVSDGQIMLDDVPLEDYRLADLRRQVAIVNQQVVLFQDTVAHNIAYGDLAG-VSEDDIIQAATAAHAMEFIEKLPEGLQTQVGEDGVMLSGGQRQRLALARAILKDAPLLILDEATSALDTESERYIQQALNRVMKNRTTLVIAHRLSTIENADKIVVMDQGQIVEVGSHQQLLEKDGAYAQLHRLQF 381          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: M1FG87_9GAMM (Lipid A export ATP-binding/permease protein MsbA n=9 Tax=Marinobacter TaxID=2742 RepID=M1FG87_9GAMM)

HSP 1 Score: 330 bits (847), Expect = 3.960e-107
Identity = 173/267 (64.79%), Postives = 207/267 (77.53%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQPH 801
            +F+ +D+  E D G  +  RVKGD+E + + F Y      VL NIS  + AG +VALVGRSGSGKSTL +LLPRFYD  DGEIRIDG L +DF LQ LR Q A+V+Q V LFNDT+  NIAYG LRD  S + IRDAA  AHA+EFID+MP GL+T+IG+NGV+LSGGQRQR+AIARA+LKDAPILILDEATSALDTESER+IQ A+ETVM+ RTTLVIAHRLSTIENAD I+V+D G +VE G H +LL   G YA+ H++QF  H
Sbjct:  298 VFETLDERPEPDSGIFAPQRVKGDIEFRDVGFSYRDQLDKVLNNISLTVPAGQSVALVGRSGSGKSTLVSLLPRFYDYTDGEIRIDGHLLEDFTLQALRAQIALVTQSVVLFNDTIAANIAYGALRD-CSPEAIRDAADKAHALEFIDRMPEGLNTMIGDNGVMLSGGQRQRLAIARALLKDAPILILDEATSALDTESERYIQNAMETVMKGRTTLVIAHRLSTIENADCILVMDNGRIVESGRHQELLDQGGAYAQLHQMQFSEH 563          
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Match: A0A3N4B740_9PSED (Lipid A export permease/ATP-binding protein MsbA n=4 Tax=root TaxID=1 RepID=A0A3N4B740_9PSED)

HSP 1 Score: 330 bits (847), Expect = 8.850e-107
Identity = 166/265 (62.64%), Postives = 216/265 (81.51%), Query Frame = 1
Query:    1 IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNISAGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLREQFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKMPNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESERHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLLGCNGFYARYHELQFQ 795
            +F+ +D+  E+D+G +  DRV G ++IKG++F+YP  +K VLE+I+F+I+ G  VALVGRSGSGKSTLANL+PRFY    GEI +DG   + ++L+NLR   A+VSQ VTLFNDT+ +NIAYG L     +  ++ AA AA+A EFID++P G DTL+GENGVLLSGGQRQR+AIARA+LKDAP+LILDEATSALDTESERHIQAAL+ VMQ RTTLVIAHRLSTIE AD I+V+D+G++VE+G+H++L+  NG+YAR H +QF+
Sbjct:  325 VFEQLDEEPELDQGTLERDRVSGQLDIKGLSFRYPDTEKQVLEDINFSIAPGQMVALVGRSGSGKSTLANLIPRFYHHDQGEILLDGVPIEQYRLRNLRHHMALVSQHVTLFNDTITSNIAYGDLAGAPME-AVKAAAEAAYAKEFIDQLPQGFDTLVGENGVLLSGGQRQRLAIARALLKDAPVLILDEATSALDTESERHIQAALDRVMQGRTTLVIAHRLSTIEKADIILVMDQGKIVERGSHAELMAQNGYYARLHSMQFE 588          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83999.19596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3MGJ0_9GAMM1.960e-11968.95Lipid A export permease/ATP-binding protein MsbA n... [more]
UPI0012BBAEF72.340e-11162.91lipid A export permease/ATP-binding protein MsbA n... [more]
A0A0D6T0U0_9PSED7.810e-10963.40Lipid A export ATP-binding/permease protein MsbA n... [more]
A0A1G0G0Q7_9GAMM5.270e-10863.87Lipid A export permease/ATP-binding protein MsbA n... [more]
A0A6I1NLM4_9PSED5.630e-10864.91Lipid A export permease/ATP-binding protein MsbA n... [more]
A0A2A2FRL8_9PSED8.090e-10863.94Lipid A export permease/ATP-binding protein MsbA n... [more]
UPI0018AA56151.590e-10765.28lipid A export permease/ATP-binding protein MsbA n... [more]
F3KG54_9GAMM3.510e-10762.50Lipid A export ATP-binding/permease protein MsbA n... [more]
M1FG87_9GAMM3.960e-10764.79Lipid A export ATP-binding/permease protein MsbA n... [more]
A0A3N4B740_9PSED8.850e-10762.64Lipid A export permease/ATP-binding protein MsbA n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83999contigM-pyrifera_M_contig83999:54..884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score337.4
Seed ortholog evalue6.2e-90
Seed eggNOG ortholog1046724.KB889862_gene1439
Preferred namemsbA
KEGG koko:K02021,ko:K06147,ko:K11085
KEGG TC3.A.1.106,3.A.1.109,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006855,GO:0006869,GO:0008144,GO:0008150,GO:0008289,GO:0008559,GO:0009987,GO:0010876,GO:0015221,GO:0015238,GO:0015399,GO:0015405,GO:0015437,GO:0015893,GO:0015920,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034040,GO:0034204,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042802,GO:0042908,GO:0042910,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071840,GO:0071944,GO:0097035,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901265,GO:1901363,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation
EggNOG OGs1MUBM@1224,1RMUR@1236,465QV@72275,COG1132@1,COG1132@2
COG Functional cat.V
BiGG ReactioniJN746.PP_4935,iPC815.YPO1395,iUMN146_1321.UM146_12980
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons1
Model size831
Cds size831
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.2579553-CDS-M-pyrifera_M_contig83999:53..8841622816747.2579553-CDS-M-pyrifera_M_contig83999:53..884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83999 54..884 -
1692278154.2401173-CDS-M-pyrifera_M_contig83999:53..8841692278154.2401173-CDS-M-pyrifera_M_contig83999:53..884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83999 54..884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83999.19596.1prot_M-pyrifera_M_contig83999.19596.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83999 54..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83999.19596.1

>prot_M-pyrifera_M_contig83999.19596.1 ID=prot_M-pyrifera_M_contig83999.19596.1|Name=mRNA_M-pyrifera_M_contig83999.19596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp
IFDLVDQPLEIDEGDISIDRVKGDVEIKGINFKYPGYDKNVLENISFNIS
AGCTVALVGRSGSGKSTLANLLPRFYDIQDGEIRIDGELQQDFKLQNLRE
QFAIVSQQVTLFNDTLRNNIAYGRLRDEVSDDQIRDAAIAAHAMEFIDKM
PNGLDTLIGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDTESE
RHIQAALETVMQNRTTLVIAHRLSTIENADEIIVLDEGEVVEQGTHSQLL
GCNGFYARYHELQFQPHETLVEELVE*
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mRNA from alignment at M-pyrifera_M_contig83999:54..884-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83999.19596.1 ID=mRNA_M-pyrifera_M_contig83999.19596.1|Name=mRNA_M-pyrifera_M_contig83999.19596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=831bp|location=Sequence derived from alignment at M-pyrifera_M_contig83999:54..884- (Macrocystis pyrifera P11B4 male)
ATTTTTGATTTGGTTGATCAACCGCTGGAAATAGATGAAGGTGACATAAG TATAGACCGAGTGAAGGGTGATGTGGAAATTAAAGGTATCAACTTTAAAT ACCCTGGTTACGATAAAAATGTGTTAGAAAATATCAGTTTTAATATTTCA GCCGGCTGTACCGTTGCACTTGTCGGTCGTTCAGGCAGCGGGAAATCGAC ATTAGCAAACTTGTTACCACGTTTTTATGACATTCAAGATGGTGAAATTC GTATTGATGGTGAACTGCAGCAAGATTTTAAACTGCAAAATTTACGTGAA CAGTTTGCGATTGTGTCACAGCAAGTGACTTTGTTTAACGATACGTTACG CAATAATATTGCCTATGGGCGCTTGCGTGATGAAGTTAGTGACGATCAAA TCCGCGATGCGGCTATTGCAGCGCATGCAATGGAATTCATTGATAAAATG CCAAATGGTTTAGACACCCTGATTGGTGAGAATGGTGTCTTGCTCTCAGG TGGGCAGCGTCAACGTATTGCGATTGCACGCGCAATTTTAAAGGATGCGC CCATATTAATTTTAGATGAAGCAACCTCTGCATTAGATACGGAATCTGAA CGACATATTCAGGCCGCCCTGGAAACTGTCATGCAAAATCGCACAACCCT AGTTATTGCGCATCGCTTATCGACGATTGAAAATGCGGATGAAATTATAG TGCTGGATGAAGGCGAAGTAGTCGAGCAGGGAACCCACAGTCAATTATTA GGTTGTAATGGGTTTTATGCGAGGTATCACGAACTGCAATTTCAACCACA TGAAACATTGGTTGAGGAACTGGTGGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83999:54..884-

>mRNA_M-pyrifera_M_contig83999.19596.1 ID=mRNA_M-pyrifera_M_contig83999.19596.1|Name=mRNA_M-pyrifera_M_contig83999.19596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig83999:54..884- (Macrocystis pyrifera P11B4 male)
ATTTTTGATTTGGTTGATCAACCGCTGGAAATAGATGAAGGTGACATAAG
TATAGACCGAGTGAAGGGTGATGTGGAAATTAAAGGTATCAACTTTAAAT
ACCCTGGTTACGATAAAAATGTGTTAGAAAATATCAGTTTTAATATTTCA
GCCGGCTGTACCGTTGCACTTGTCGGTCGTTCAGGCAGCGGGAAATCGAC
ATTAGCAAACTTGTTACCACGTTTTTATGACATTCAAGATGGTGAAATTC
GTATTGATGGTGAACTGCAGCAAGATTTTAAACTGCAAAATTTACGTGAA
CAGTTTGCGATTGTGTCACAGCAAGTGACTTTGTTTAACGATACGTTACG
CAATAATATTGCCTATGGGCGCTTGCGTGATGAAGTTAGTGACGATCAAA
TCCGCGATGCGGCTATTGCAGCGCATGCAATGGAATTCATTGATAAAATG
CCAAATGGTTTAGACACCCTGATTGGTGAGAATGGTGTCTTGCTCTCAGG
TGGGCAGCGTCAACGTATTGCGATTGCACGCGCAATTTTAAAGGATGCGC
CCATATTAATTTTAGATGAAGCAACCTCTGCATTAGATACGGAATCTGAA
CGACATATTCAGGCCGCCCTGGAAACTGTCATGCAAAATCGCACAACCCT
AGTTATTGCGCATCGCTTATCGACGATTGAAAATGCGGATGAAATTATAG
TGCTGGATGAAGGCGAAGTAGTCGAGCAGGGAACCCACAGTCAATTATTA
GGTTGTAATGGGTTTTATGCGAGGTATCACGAACTGCAATTTCAACCACA
TGAAACATTGGTTGAGGAACTGGTGGAATGAATTTTTGATTTGGTTGATC
AACCGCTGGAAATAGATGAAGGTGACATAAGTATAGACCGAGTGAAGGGT
GATGTGGAAATTAAAGGTATCAACTTTAAATACCCTGGTTACGATAAAAA
TGTGTTAGAAAATATCAGTTTTAATATTTCAGCCGGCTGTACCGTTGCAC
TTGTCGGTCGTTCAGGCAGCGGGAAATCGACATTAGCAAACTTGTTACCA
CGTTTTTATGACATTCAAGATGGTGAAATTCGTATTGATGGTGAACTGCA
GCAAGATTTTAAACTGCAAAATTTACGTGAACAGTTTGCGATTGTGTCAC
AGCAAGTGACTTTGTTTAACGATACGTTACGCAATAATATTGCCTATGGG
CGCTTGCGTGATGAAGTTAGTGACGATCAAATCCGCGATGCGGCTATTGC
AGCGCATGCAATGGAATTCATTGATAAAATGCCAAATGGTTTAGACACCC
TGATTGGTGAGAATGGTGTCTTGCTCTCAGGTGGGCAGCGTCAACGTATT
GCGATTGCACGCGCAATTTTAAAGGATGCGCCCATATTAATTTTAGATGA
AGCAACCTCTGCATTAGATACGGAATCTGAACGACATATTCAGGCCGCCC
TGGAAACTGTCATGCAAAATCGCACAACCCTAGTTATTGCGCATCGCTTA
TCGACGATTGAAAATGCGGATGAAATTATAGTGCTGGATGAAGGCGAAGT
AGTCGAGCAGGGAACCCACAGTCAATTATTAGGTTGTAATGGGTTTTATG
CGAGGTATCACGAACTGCAATTTCAACCACATGAAACATTGGTTGAGGAA
CTGGTGGAATGA
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