mRNA_M-pyrifera_M_contig83995.19594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83995.19594.1
Unique NamemRNA_M-pyrifera_M_contig83995.19594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: UPI0014557938 (zinc finger C3H1 domain-containing protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014557938)

HSP 1 Score: 82.4 bits (202), Expect = 1.550e-16
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 QEREHDSVAGRYISPLQRFRAYRFSPYF-KPAGSKLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSE 234
            +E    S   +Y SPL RFR+YR SP+F K A    LSP  +  +DP+ ++C+FEL+GTCND DC WQHI D   T  E
Sbjct: 1196 EEERLTSTLMKYSSPLLRFRSYRLSPFFVKEAKLSRLSPSFSHKMDPMKVLCKFELNGTCNDDDCLWQHIKDYELTDHE 1274          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: A0A8B7Y8E3_ACAPL (zinc finger C3H1 domain-containing protein-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y8E3_ACAPL)

HSP 1 Score: 78.6 bits (192), Expect = 3.490e-15
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 EHDSVAGRYISPLQRFRAYRFSPYF-KPAGSKLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIAD 213
            E D+    Y SPL  FR+YR SP+F K A    LSP  +  LDP   +C+FEL+GTCND DCPWQH  D
Sbjct: 1181 ERDASLAPYTSPLLCFRSYRLSPFFVKEAKFSRLSPSFSHKLDPTRALCQFELNGTCNDDDCPWQHQKD 1249          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: UPI0014036E5A (zinc finger C3H1 domain-containing protein-like isoform X1 n=4 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014036E5A)

HSP 1 Score: 75.1 bits (183), Expect = 5.800e-14
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   28 GRYISPLQRFRAYRFSPYFKPAGSKLLS-PEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEALQ 243
            G Y SPL  F+ YRFS YF+     LLS P  +  ++P    C FEL GTCND DCPWQH+AD T +  E  Q
Sbjct: 1764 GPYKSPLLAFKTYRFSTYFRTKEQLLLSSPSFSNKVEPRWSFCHFELTGTCNDEDCPWQHMADCTLSREELFQ 1836          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: A0A1L8GYP1_XENLA (zinc finger C3H1 domain-containing protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8GYP1_XENLA)

HSP 1 Score: 71.2 bits (173), Expect = 1.310e-12
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   34 YISPLQRFRAYRFSPYFKPAGSKLLSP-EMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEALQ 243
            Y SPL  F++YRFSPYF+     LLS    +  ++P +  C F+L GTCND DCPWQH+ D T +  +  Q
Sbjct: 1082 YKSPLLVFKSYRFSPYFRTKEKLLLSSVSHSNMIEPKTFFCHFDLTGTCNDDDCPWQHMRDCTLSRKQLFQ 1152          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: UPI001864F893 (LOW QUALITY PROTEIN: zinc finger C3H1 domain-containing protein-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864F893)

HSP 1 Score: 70.5 bits (171), Expect = 2.440e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   28 GRYISPLQRFRAYRFSPYFKPAGS-KLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEALQ 243
            G Y SPL  F++YRFSPYF+      L S   +  ++P    CRF+L GTCND DCPWQH+ + T T  +  Q
Sbjct: 1171 GPYHSPLLVFKSYRFSPYFRTKEKLSLSSVSYSNIIEPEKCFCRFDLTGTCNDDDCPWQHMRNCTFTGPQLFQ 1243          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: UPI0018D746D8 (zinc finger C3H1 domain-containing protein-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D746D8)

HSP 1 Score: 69.3 bits (168), Expect = 6.220e-12
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   34 YISPLQRFRAYRFSPYF-KPAGSKLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSE 234
            Y SPL  FR+YR SP+F + A    LS   +  L+P+  +C+FEL+GTCND +CPWQH  D   T  E
Sbjct: 1207 YSSPLLCFRSYRLSPFFVQEAKLSRLSLSFSHKLNPMRAMCQFELNGTCNDDECPWQHKKDYEMTDHE 1274          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: A0A1V9ZWX4_9STRA (C3H1-type domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWX4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.240e-9
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   40 SPLQRFRAYRFSPYFKPA--GSKLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEAL 240
            SPL   R +RF P F     G  +L+   T ALDP+ I+C +E+HG CND  C +QH  D T T   A+
Sbjct:   60 SPLLSMRTFRFQPAFNVLFPGRSILTNTYTHALDPMKILCPYEMHGVCNDDQCTYQHEQDYTVTTEMAM 128          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: L8GEU7_ACACA (IgA-specific serine endopeptidase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEU7_ACACA)

HSP 1 Score: 62.0 bits (149), Expect = 2.340e-9
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   34 YISPLQRFRAYRFSPYFKPAGSKLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEALQ 243
            Y SPL+  R++R SP +     +L S   +  ++P   +C FELHGTCND +CP+QH+ D T T +E L+
Sbjct:  975 YRSPLKCLRSWRLSPQY---DLRLDSLTYSHKINPWIHLCAFELHGTCNDDECPFQHLRDATPTKAEVLE 1041          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: A0A2R5L7W3_9ACAR (zf-C3H1 domain-containing protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L7W3_9ACAR)

HSP 1 Score: 60.1 bits (144), Expect = 1.110e-8
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   34 YISPLQRFRAYRFSPYF-KPAGSKLLSPEMTIALDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEAL 240
            Y+SPL  FR+YR S  F K +   L S      L   + +CR+ELHGTCND  C WQH  D + +  E L
Sbjct:  768 YVSPLLHFRSYRLSANFLKLSNQSLDSQTFCHKLQCRAHLCRYELHGTCNDDRCSWQHQRDYSCSNDEIL 837          
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Match: UPI001B88D306 (zinc finger C3H1 domain-containing protein-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D306)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-8
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   34 YISPLQRFRAYRFSPYFKPAGSKLLSPEMTIA--LDPLSIVCRFELHGTCNDPDCPWQHIADQTRTPSEALQ 243
            + SPL +F+AYRFSP+F+   + L  P +T +  +D   I CRF+L G CND  C  QH  D   +  E L+
Sbjct: 1114 FSSPLLKFKAYRFSPFFRTKAN-LTIPSITFSNKIDAKKIFCRFDLQGRCNDEKCSGQHQRDYKMSGQEILE 1184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83995.19594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00145579381.550e-1649.37zinc finger C3H1 domain-containing protein-like n=... [more]
A0A8B7Y8E3_ACAPL3.490e-1553.62zinc finger C3H1 domain-containing protein-like is... [more]
UPI0014036E5A5.800e-1450.68zinc finger C3H1 domain-containing protein-like is... [more]
A0A1L8GYP1_XENLA1.310e-1246.48zinc finger C3H1 domain-containing protein n=1 Tax... [more]
UPI001864F8932.440e-1246.58LOW QUALITY PROTEIN: zinc finger C3H1 domain-conta... [more]
UPI0018D746D86.220e-1248.53zinc finger C3H1 domain-containing protein-like is... [more]
A0A1V9ZWX4_9STRA1.240e-943.48C3H1-type domain-containing protein (Fragment) n=1... [more]
L8GEU7_ACACA2.340e-942.86IgA-specific serine endopeptidase n=1 Tax=Acantham... [more]
A0A2R5L7W3_9ACAR1.110e-844.29zf-C3H1 domain-containing protein (Fragment) n=1 T... [more]
UPI001B88D3061.120e-841.67zinc finger C3H1 domain-containing protein-like is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83995contigM-pyrifera_M_contig83995:192..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.5
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog8364.ENSXETP00000062568
Preferred nameZFC3H1
Hectar predicted targeting categoryother localisation
GOsGO:0000178,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:1902494,GO:1905354
EggNOG free text desc.zinc finger
EggNOG OGs38GKR@33154,3BJ15@33208,3D3AV@33213,48830@7711,48URR@7742,KOG4839@1,KOG4839@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_004490.2
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.182411-CDS-M-pyrifera_M_contig83995:191..4341622816747.182411-CDS-M-pyrifera_M_contig83995:191..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83995 192..434 +
1692278154.1783867-CDS-M-pyrifera_M_contig83995:191..4341692278154.1783867-CDS-M-pyrifera_M_contig83995:191..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83995 192..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83995.19594.1prot_M-pyrifera_M_contig83995.19594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83995 192..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83995.19594.1

>prot_M-pyrifera_M_contig83995.19594.1 ID=prot_M-pyrifera_M_contig83995.19594.1|Name=mRNA_M-pyrifera_M_contig83995.19594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
QEREHDSVAGRYISPLQRFRAYRFSPYFKPAGSKLLSPEMTIALDPLSIV
CRFELHGTCNDPDCPWQHIADQTRTPSEALQ
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mRNA from alignment at M-pyrifera_M_contig83995:192..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83995.19594.1 ID=mRNA_M-pyrifera_M_contig83995.19594.1|Name=mRNA_M-pyrifera_M_contig83995.19594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig83995:192..434+ (Macrocystis pyrifera P11B4 male)
CAAGAGCGAGAGCATGACAGCGTGGCTGGCCGCTACATCTCTCCTCTCCA GCGATTCCGAGCGTACCGCTTCAGCCCCTACTTCAAGCCGGCCGGCTCGA AGCTCCTCTCTCCAGAGATGACGATTGCCCTCGATCCATTGAGCATCGTA TGCCGCTTTGAGCTCCACGGCACCTGCAATGACCCTGACTGCCCCTGGCA ACACATTGCCGACCAGACGAGGACTCCCTCTGAGGCACTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83995:192..434+

>mRNA_M-pyrifera_M_contig83995.19594.1 ID=mRNA_M-pyrifera_M_contig83995.19594.1|Name=mRNA_M-pyrifera_M_contig83995.19594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig83995:192..434+ (Macrocystis pyrifera P11B4 male)
CAAGAGCGAGAGCATGACAGCGTGGCTGGCCGCTACATCTCTCCTCTCCA
GCGATTCCGAGCGTACCGCTTCAGCCCCTACTTCAAGCCGGCCGGCTCGA
AGCTCCTCTCTCCAGAGATGACGATTGCCCTCGATCCATTGAGCATCGTA
TGCCGCTTTGAGCTCCACGGCACCTGCAATGACCCTGACTGCCCCTGGCA
ACACATTGCCGACCAGACGAGGACTCCCTCTGAGGCACTGCAGCAAGAGC
GAGAGCATGACAGCGTGGCTGGCCGCTACATCTCTCCTCTCCAGCGATTC
CGAGCGTACCGCTTCAGCCCCTACTTCAAGCCGGCCGGCTCGAAGCTCCT
CTCTCCAGAGATGACGATTGCCCTCGATCCATTGAGCATCGTATGCCGCT
TTGAGCTCCACGGCACCTGCAATGACCCTGACTGCCCCTGGCAACACATT
GCCGACCAGACGAGGACTCCCTCTGAGGCACTGCAG
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