mRNA_M-pyrifera_M_contig83871.19584.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83871.19584.1
Unique NamemRNA_M-pyrifera_M_contig83871.19584.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: UPI0009E25153 (ankyrin-1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E25153)

HSP 1 Score: 65.5 bits (158), Expect = 2.900e-9
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    7 HAARGGHVEVLNVLLFAGANTR-----HANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNARQRQRSREGFTALHCAALAGRTEVARYLL 357
            HAARG HV+++ +LL AGA+       +A     T L+ A + G L+A R L++   +  + +    G+  L  AA KGH  V+E L+ E          +  T+LH AALAG+TE  R L+
Sbjct:   97 HAARGNHVQIIQLLLNAGADINFPAALNAGCAYMTPLICASKFGSLDACRLLIQNGAH--ITKKSCNGQSPLHYAARKGHTKVLELLLKEGGIPINLEDNDKATSLHAAALAGQTEAIRKLV 216          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A6P8RTK3_GEOSA (ankyrin repeat domain-containing protein 63 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8RTK3_GEOSA)

HSP 1 Score: 59.7 bits (143), Expect = 1.790e-7
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   37 LNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLV---SEKNARQRQRSREGFTALHCAALAGRTEVARYL 354
            + +LL  GA+    +  G TAL  AC+ GHL+ V+ LV+    P++   D  G G LI AAS GH+AV+E+L+        R  + +  G +AL  A + G  +  R L
Sbjct:   67 VRLLLDKGAHVNEEDERGRTALSLACELGHLDTVKLLVQFNADPEIPDRD--GNGPLIYAASAGHSAVLEFLLRAFKRLGLRPERTNHAGQSALQVATVRGHGDCVRAL 173          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A8H5MSU0_9HYPO (Ankyrin repeat-containing protein n=1 Tax=Fusarium phyllophilum TaxID=47803 RepID=A0A8H5MSU0_9HYPO)

HSP 1 Score: 57.8 bits (138), Expect = 1.390e-6
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1
Query:   10 AARGGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNARQRQRSREGFTALHCAALAGRTEVARYLLDFCPEPEQE 384
            AA  GHVEV+ +LL AGA+  H ++ G T L  A + GH   V  L+E+  Y D  +T V  + AL  AAS G  +++  L+S   A   + +  G+T LH A  A +      LL   P+   E
Sbjct:  659 AAEYGHVEVVRLLLKAGADVNHVSI-GNTPLHLAVRSGHNNVVEQLLEKRPYID-SQTTVITQSALSRAASLGRTSMINLLISH-GADALKANGSGWTPLHYAIAADKRATLAQLLSTIPKTSFE 780          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A4W4H1Z3_ELEEL (Uncharacterized protein n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4H1Z3_ELEEL)

HSP 1 Score: 55.1 bits (131), Expect = 1.540e-6
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 VLHAA----RGGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKN 267
            ++HAA    +    +  ++LL  GAN    +  G TAL  AC+ GHL+AV+ LV+    P++  TD  G  AL+ AA  GH+ V+E+L+   N
Sbjct:   44 LMHAACLQDQTARAKFAHLLLERGANVNMQDEHGRTALSLACELGHLDAVKTLVQFNADPEL--TDSWGNSALMYAAYGGHSQVLEFLIRALN 134          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: W5MQ12_LEPOC (Death domain-containing protein n=3 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MQ12_LEPOC)

HSP 1 Score: 56.2 bits (134), Expect = 3.870e-6
Identity = 36/119 (30.25%), Postives = 60/119 (50.42%), Query Frame = 1
Query:    4 LHAARGGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNARQRQRSREGFTALHCAALAGRTEVARYLLD 360
            L+A   GH+++L +L+ AGA   H NM G   L  A   G L+ V +++E+     + R D   +   + AA  G    ++ L  ++    +   +EG +ALH AA +G   V R L++
Sbjct:    5 LYATWFGHLQILKILVSAGAVIPHTNMSGQGLLHCAAARGRLDIVEYILEELEDNGLDRPDEHDKTPFLLAAENGKLNTLQCL-RQRGCNIKAMDKEGNSALHLAASSGHPSVVRELMN 122          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A8B9J4A9_ASTMX (Uncharacterized protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9J4A9_ASTMX)

HSP 1 Score: 53.1 bits (126), Expect = 5.350e-6
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   19 GGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEK 264
            G   +  ++LL  GA+    +  G TAL  AC+ GHL+AV+ LV+    P+V  TD  G  AL+ AA  GH  ++E+L+  K
Sbjct:   36 GTRSKFTHLLLEKGADVNSRDEHGRTALSLACELGHLDAVKILVQFNADPEV--TDTWGNSALMYAAYGGHNQILEFLMRLK 115          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: UPI0018ECB125 (ankyrin repeat and death domain-containing protein 1B-like isoform X1 n=4 Tax=Micropterus TaxID=27705 RepID=UPI0018ECB125)

HSP 1 Score: 55.8 bits (133), Expect = 5.650e-6
Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   10 AARGGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNARQRQRSREGFTALHCAALAGRTEVARYLL 357
            AA  G +E+L +L+ AGA  +  N EG   +  A    H E V ++V   +  ++ + D +G GA   AA  G   +++ L+   N    + ++ G T LH AA  G  +  + LL
Sbjct:  128 AAWFGSLEILKLLVKAGAEQKVENEEGLNIMHCAAINNHTEIVEYIVNDLQMKELDKDDQSGHGAFALAAEHGCVQMLDMLMDPYNMATMKPNKRGDTPLHLAATNGHLDAVQLLL 243          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A8J6K4W1_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K4W1_ELECQ)

HSP 1 Score: 55.5 bits (132), Expect = 6.190e-6
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   37 LNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNA---RQRQRSREGFTALHCAALAGRTEVARYL 354
            + +LL  GA+    +  G TAL  AC+ GHL+AV+ LV+ +  P++   D  G  AL+ AAS GH+A + +L+        R    +R G +AL  A ++G  E  R L
Sbjct:   68 VRLLLDKGADVNGQDEAGRTALSLACELGHLDAVKLLVQHSANPEIPDRD--GNRALMYAASCGHSAELLFLLRSYKRFGLRLDATNRAGISALDAARVSGHWECERAL 174          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A0L8H4S3_OCTBM (SOCS box domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8H4S3_OCTBM)

HSP 1 Score: 55.5 bits (132), Expect = 7.600e-6
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 1
Query:    7 HAARGGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNAR---QRQRSREGFTALH 312
            HA   G +E++ +L   G+     + EG T LL+AC CG  + VRFL+ +  + ++ R     R AL  AA  GH  VV  L+ E  A    Q    + G T LH
Sbjct:   86 HAVLNGSLELVKILTRNGSVLNRCDSEGQTPLLQACNCGFTDIVRFLISEGSHVNLSRNHNDER-ALHIAAGAGHIEVVRVLLEESRANIEIQTLLLQGGMTPLH 189          
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Match: A0A158Q6W0_9BILA (ANK_REP_REGION domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A158Q6W0_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 2.810e-5
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 1
Query:   34 VLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLVEQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNAR-QRQRSREGFTALHCAALAGRTEVARYLL 357
            +L+VLL  GA     +++G T +L A   G+LE +  ++ QT   D+   D    G + CAAS GHA ++EYL+S  +        R G TAL  A   G  E AR LL
Sbjct:   89 MLHVLLKYGAKVNARDIDGRTPILWAATYGNLE-IAIILSQTG-GDIYAVDRDQLGTIHCAASHGHAHIIEYLISTLDPSIVDSMDRNGDTALFYAVTLGHYECARLLL 195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83871.19584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
UPI0009E251532.900e-936.07ankyrin-1-like n=1 Tax=Orbicella faveolata TaxID=4... [more]
A0A6P8RTK3_GEOSA1.790e-735.78ankyrin repeat domain-containing protein 63 n=1 Ta... [more]
A0A8H5MSU0_9HYPO1.390e-636.00Ankyrin repeat-containing protein n=1 Tax=Fusarium... [more]
A0A4W4H1Z3_ELEEL1.540e-637.63Uncharacterized protein n=1 Tax=Electrophorus elec... [more]
W5MQ12_LEPOC3.870e-630.25Death domain-containing protein n=3 Tax=Lepisosteu... [more]
A0A8B9J4A9_ASTMX5.350e-639.02Uncharacterized protein n=1 Tax=Astyanax mexicanus... [more]
UPI0018ECB1255.650e-630.17ankyrin repeat and death domain-containing protein... [more]
A0A8J6K4W1_ELECQ6.190e-635.78Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
A0A0L8H4S3_OCTBM7.600e-635.24SOCS box domain-containing protein n=2 Tax=Octopus... [more]
A0A158Q6W0_9BILA2.810e-537.61ANK_REP_REGION domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83871contigM-pyrifera_M_contig83871:2..724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog529818.AMSG_11624T0
KEGG koko:K15502
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons2
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.6164227-CDS-M-pyrifera_M_contig83871:1..2831622816746.6164227-CDS-M-pyrifera_M_contig83871:1..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83871 2..283 -
1692278153.7596352-CDS-M-pyrifera_M_contig83871:1..2831692278153.7596352-CDS-M-pyrifera_M_contig83871:1..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83871 2..283 -
1622816746.626822-CDS-M-pyrifera_M_contig83871:487..7241622816746.626822-CDS-M-pyrifera_M_contig83871:487..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83871 488..724 -
1692278153.7732983-CDS-M-pyrifera_M_contig83871:487..7241692278153.7732983-CDS-M-pyrifera_M_contig83871:487..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83871 488..724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83871.19584.1prot_M-pyrifera_M_contig83871.19584.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83871 2..724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83871.19584.1

>prot_M-pyrifera_M_contig83871.19584.1 ID=prot_M-pyrifera_M_contig83871.19584.1|Name=mRNA_M-pyrifera_M_contig83871.19584.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
VLHAARGGHVEVLNVLLFAGANTRHANMEGTTALLEACQCGHLEAVRFLV
EQTRYPDVGRTDVAGRGALICAASKGHAAVVEYLVSEKNARQRQRSREGF
TALHCAALAGRTEVARYLLDFCPEPEQETKDGSTALLLAASKGRLETARM
LLFERGANLHHRNAAGRSALDVA
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mRNA from alignment at M-pyrifera_M_contig83871:2..724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83871.19584.1 ID=mRNA_M-pyrifera_M_contig83871.19584.1|Name=mRNA_M-pyrifera_M_contig83871.19584.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig83871:2..724- (Macrocystis pyrifera P11B4 male)
GTGCTGCACGCGGCACGCGGGGGGCACGTGGAGGTGCTCAACGTGCTGCT GTTCGCGGGCGCCAACACGCGCCACGCCAACATGGAGGGCACGACCGCGC TGCTGGAGGCGTGCCAGTGCGGCCACCTGGAGGCCGTGCGCTTCCTGGTG GAGCAGACGCGCTACCCTGACGTGGGCAGGACGGACGTGGCCGGCCGTGG CGCGCTCATCTGCGCGGCCAGCAAGGGCCACGCGGCGGTGGTGCGCTACC TGATCGGCCACCAGTACGCCGACCTGGGCCAGGCAGACGCCGCCGGCATG ACTGCGCTGCTGTGGGCGGCGCGGCGGGGGCGGCTGGGGCTGGTGCGCTA CCTGGTGGACGAGGCCGGCGTGCGGCTGCTGCAGGCGGACAGCAGCCATT GGACTGCGCTGCTGTGGGCGGCCTACGCGGGCCACCTGGAGGTGGTCGAG TACCTCGTCAGCGAGAAGAACGCCAGGCAGCGCCAGCGCAGCCGCGAAGG CTTCACCGCCCTGCACTGCGCGGCGCTGGCCGGCAGGACGGAGGTGGCGC GCTACCTTCTCGACTTCTGCCCCGAGCCAGAGCAGGAGACGAAGGACGGC AGCACTGCGTTGCTCCTGGCCGCCTCCAAGGGCCGCCTCGAGACGGCGCG CATGCTGCTCTTCGAGCGCGGTGCCAACCTCCACCACCGCAATGCCGCGG GCCGCAGCGCACTCGACGTTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83871:2..724-

>mRNA_M-pyrifera_M_contig83871.19584.1 ID=mRNA_M-pyrifera_M_contig83871.19584.1|Name=mRNA_M-pyrifera_M_contig83871.19584.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig83871:2..724- (Macrocystis pyrifera P11B4 male)
GTGCTGCACGCGGCACGCGGGGGGCACGTGGAGGTGCTCAACGTGCTGCT
GTTCGCGGGCGCCAACACGCGCCACGCCAACATGGAGGGCACGACCGCGC
TGCTGGAGGCGTGCCAGTGCGGCCACCTGGAGGCCGTGCGCTTCCTGGTG
GAGCAGACGCGCTACCCTGACGTGGGCAGGACGGACGTGGCCGGCCGTGG
CGCGCTCATCTGCGCGGCCAGCAAGGGCCACGCGGCGGTGCTGCACGCGG
CACGCGGGGGGCACGTGGAGGTGCTCAACGTGCTGCTGTTCGCGGGCGCC
AACACGCGCCACGCCAACATGGAGGGCACGACCGCGCTGCTGGAGGCGTG
CCAGTGCGGCCACCTGGAGGCCGTGCGCTTCCTGGTGGAGCAGACGCGCT
ACCCTGACGTGGGCAGGACGGACGTGGCCGGCCGTGGCGCGCTCATCTGC
GCGGCCAGCAAGGGCCACGCGGCGGTGGTCGAGTACCTCGTCAGCGAGAA
GAACGCCAGGCAGCGCCAGCGCAGCCGCGAAGGCTTCACCGCCCTGCACT
GCGCGGCGCTGGCCGGCAGGACGGAGGTGGCGCGCTACCTTCTCGACTTC
TGCCCCGAGCCAGAGCAGGAGACGAAGGACGGCAGCACTGCGTTGCTCCT
GGCCGCCTCCAAGGGCCGCCTCGAGACGGCGCGCATGCTGCTCTTCGAGC
GCGGTGCCAACCTCCACCACCGCAATGCCGCGGGCCGCAGCGCACTCGAC
GTTGCGGTGGTCGAGTACCTCGTCAGCGAGAAGAACGCCAGGCAGCGCCA
GCGCAGCCGCGAAGGCTTCACCGCCCTGCACTGCGCGGCGCTGGCCGGCA
GGACGGAGGTGGCGCGCTACCTTCTCGACTTCTGCCCCGAGCCAGAGCAG
GAGACGAAGGACGGCAGCACTGCGTTGCTCCTGGCCGCCTCCAAGGGCCG
CCTCGAGACGGCGCGCATGCTGCTCTTCGAGCGCGGTGCCAACCTCCACC
ACCGCAATGCCGCGGGCCGCAGCGCACTCGACGTTGCG
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