mRNA_M-pyrifera_M_contig83825.19574.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83825.19574.1
Unique NamemRNA_M-pyrifera_M_contig83825.19574.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A7S1CNL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNL2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.300e-48
Identity = 79/115 (68.70%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:   31 EGLPRGPMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHVFNSP 375
            +G PR P+DTN+QL LIFQYYCRFGRTGGRG   +T+DNVNFAKFARECPGLL +R+ RTEVDLVFT+ +AK +RR+ Y QFLDAL+ +AA +FP  D A+GF+LLL+RHVF  P
Sbjct:   65 DGPPR-PVDTNSQLILIFQYYCRFGRTGGRGVTADTIDNVNFAKFARECPGLLGKRVSRTEVDLVFTRAKAKGARRIDYDQFLDALSMLAAKRFPKLDAASGFSLLLARHVFQCP 178
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A5A8CQH9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CQH9_CAFRO)

HSP 1 Score: 157 bits (397), Expect = 2.940e-44
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 1 
Query:   13 EAARSVEGLPRGPMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHVF 366
            EA+R +   P  P+D N QLQLIFQYYCRFGRTG RG  ++T+D+ NF + ARECP LLD RLDR EVDL+F KCR+K  RRL Y QFLDALAAMA  K+P+ED    F+LLL  HVF
Sbjct:   87 EASRGLAAEPAYPLDANTQLQLIFQYYCRFGRTGPRGTAQDTIDSFNFMRLARECPDLLDSRLDRAEVDLIFAKCRSKGQRRLEYRQFLDALAAMAITKYPAEDPVAAFSLLLGHHVF 204
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A024G119_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G119_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.450e-28
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:   55 DTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHVFNSP 375
            D +  L+ IF YYCRFGRT  +G D +T+DN NF+K  RECP L+D RL RTE+DL+F K + K  RR+ YA+FLDAL  +AA K+P   L      LL  H+   P
Sbjct:  111 DPHTLLKGIFHYYCRFGRTAAKGVDAKTLDNANFSKLCRECPELVDSRLTRTEIDLIFVKVKKKGERRINYARFLDALGLIAAEKYPDMPLEQSVPKLLGTHLVKLP 217
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A485LRT6_9STRA (Aste57867_24939 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRT6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.000e-27
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:   49 PMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHV 363
            P D +  L+ +FQ+YCRFGRTG RG  E T+DN NFAKF RECP L+D      ++DL F K +AK  RR+TY  FL+AL  +A  K+P + LA    +LL  ++
Sbjct:   62 PNDPHTLLKGVFQFYCRFGRTGARGPSETTMDNANFAKFCRECPRLVDHNFSAVDIDLTFVKVKAKGERRITYPMFLEALGIIATKKYPKQTLAGAVPMLLDVNI 166
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A6G0WXR9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXR9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.390e-27
Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 1 
Query:   37 LPRGPMDTNAQLQL-------------IFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHV 363
            LP  P+ +N Q+ L             +FQ+YCRFGRTG  G  E T+DN NFAKF RECP L+ +     ++DL F K +AK  RR++Y  FL+AL  +A  K+P + LA    LLL  +V
Sbjct:   37 LPDSPLGSNPQVSLEGDLNDPHTLLRAVFQFYCRFGRTGAHGTSETTMDNANFAKFCRECPQLVGDNFSPVDIDLTFVKVKAKGERRISYVMFLEALGIIATKKYPDKSLAVALPLLLEMNV 158
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: F0W921_9STRA (DEAD/DEAH box RNA helicase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W921_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.420e-26
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:   55 DTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHVFNSP 375
            D +  L+ IF YYCRFGRT  +G D +T+DN NF+K  RECP L+D RL RTE+DL+F K + K  RR+ YA+FLDAL  +A+ K+P   L      LL  H+   P
Sbjct:  523 DPHTLLKGIFHYYCRFGRTAAKGVDAKTLDNANFSKLCRECPELVDSRLTRTEIDLIFVKVKKKGERRINYARFLDALGMIASEKYPELPLEQSVPKLLGTHLVKLP 629
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A8K1CK01_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK01_PYTOL)

HSP 1 Score: 107 bits (266), Expect = 2.710e-25
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:   49 PMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHVFNSP 375
            P D +  L+ +F YYCRFGRTG +G +E+T++NVNF+K  RECP LL      T+VDL+F K + K  RR+ Y QFLDAL  +A  K+P   L      +L  H+   P
Sbjct:  121 PNDPHTLLKAVFHYYCRFGRTGAKGVNEKTMNNVNFSKLCRECPDLLSADFTTTDVDLIFVKAKKKGERRINYTQFLDALGMLALEKYPETPLEKSLPKVLQVHLARLP 229
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: W4H1D2_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1D2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.360e-25
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:    7 AAEAARSVEGLP-------RGPMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLL--DERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHV 363
            AA AA S+  LP         P D +  L+ +FQ+YCR+GRTG  G  E T+DN NFAKF RECP L+    R    ++DL+F K +AK +RR++Y  FL+AL  +A  K+P+  L +    LL  H+
Sbjct:   50 AAVAAMSLSALPCPQATLDGDPNDPHTLLRGVFQFYCRYGRTGAHGTSETTLDNANFAKFCRECPDLVGGSPRFSTVDIDLIFVKVKAKGARRISYPMFLEALGIIATKKYPAMGLTSALPTLLDAHI 177
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A3R7BKR3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BKR3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.710e-25
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:   49 PMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLL--DERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHV 363
            P D +  L+ +FQ+YCR+GRTG  G  E T+DN NFAKF RECP L+    R    ++DL+F K +AK +RR++Y  FL+AL  +A  K+P+  L +    LL  H+
Sbjct:   41 PNDPHTLLRGVFQFYCRYGRTGAHGTSETTLDNANFAKFCRECPDLVGGSPRFSTVDIDLIFVKVKAKGARRISYPMFLEALGIIATKKYPAMGLTSALPTLLDAHI 147
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BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Match: A0A024UBP7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBP7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.890e-24
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   49 PMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNVNFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMAAVKFPSEDLATGFALLLSRHV 363
            P D +  L+ +FQ+YCR+GRTG  G  E T+DN NFAKF RECP L+       ++DL+F K +AK  RR+ Y  FL+AL  +A  K+P   L +    L+  H+
Sbjct:   70 PNDPHTLLRGVFQFYCRYGRTGAHGTSEVTMDNANFAKFCRECPDLVGGHFSTVDIDLIFVKVKAKGVRRIAYPMFLEALGIIATKKYPDMALTSALPTLMDAHI 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83825.19574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CNL2_9STRA2.300e-4868.70Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8CQH9_CAFRO2.940e-4463.56Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A024G119_9STRA3.450e-2850.47Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A485LRT6_9STRA2.000e-2748.57Aste57867_24939 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WXR9_9STRA8.390e-2743.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0W921_9STRA4.420e-2649.53DEAD/DEAH box RNA helicase putative n=1 Tax=Albugo... [more]
A0A8K1CK01_PYTOL2.710e-2545.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4H1D2_9STRA3.360e-2542.97Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A3R7BKR3_9STRA9.710e-2544.86Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UBP7_9STRA3.890e-2443.81Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83825contigM-pyrifera_M_contig83825:89..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog653948.CCA17632
Preferred nameTPPP
KEGG koko:K19466
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008026,GO:0008092,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0015631,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030424,GO:0031109,GO:0031334,GO:0031974,GO:0031981,GO:0032271,GO:0032273,GO:0034622,GO:0034641,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046785,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051258,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0097435,GO:0097458,GO:0120025,GO:0140098,GO:1901360
EggNOG free text desc.microtubule polymerization
EggNOG OGsCOG0513@1,KOG0331@2759,KOG4070@1,KOG4070@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.2244575-CDS-M-pyrifera_M_contig83825:88..4631622816746.2244575-CDS-M-pyrifera_M_contig83825:88..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83825 89..463 +
1692278153.5586407-CDS-M-pyrifera_M_contig83825:88..4631692278153.5586407-CDS-M-pyrifera_M_contig83825:88..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83825 89..463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83825.19574.1prot_M-pyrifera_M_contig83825.19574.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83825 89..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83825.19574.1

>prot_M-pyrifera_M_contig83825.19574.1 ID=prot_M-pyrifera_M_contig83825.19574.1|Name=mRNA_M-pyrifera_M_contig83825.19574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
ERAAEAARSVEGLPRGPMDTNAQLQLIFQYYCRFGRTGGRGEDEETVDNV
NFAKFARECPGLLDERLDRTEVDLVFTKCRAKRSRRLTYAQFLDALAAMA
AVKFPSEDLATGFALLLSRHVFNSP
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mRNA from alignment at M-pyrifera_M_contig83825:89..463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83825.19574.1 ID=mRNA_M-pyrifera_M_contig83825.19574.1|Name=mRNA_M-pyrifera_M_contig83825.19574.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig83825:89..463+ (Macrocystis pyrifera P11B4 male)
GAGCGTGCTGCGGAGGCTGCCCGTTCCGTGGAGGGTCTTCCTCGGGGTCC
GATGGACACGAACGCGCAGTTGCAGCTGATTTTCCAGTACTACTGTCGTT
TCGGTCGCACAGGCGGGCGTGGGGAGGACGAGGAGACGGTGGACAACGTG
AACTTTGCCAAGTTTGCGCGGGAGTGTCCCGGTCTGCTGGACGAGCGTCT
GGATCGCACGGAAGTGGACTTGGTGTTTACAAAGTGCCGAGCAAAGCGAT
CACGTCGCCTCACGTATGCGCAGTTTCTGGATGCGCTTGCGGCGATGGCT
GCTGTCAAGTTTCCGTCCGAGGACCTGGCCACGGGGTTCGCCCTGCTCTT
GTCGCGCCACGTGTTCAATTCGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83825:89..463+

>mRNA_M-pyrifera_M_contig83825.19574.1 ID=mRNA_M-pyrifera_M_contig83825.19574.1|Name=mRNA_M-pyrifera_M_contig83825.19574.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig83825:89..463+ (Macrocystis pyrifera P11B4 male)
GAGCGTGCTGCGGAGGCTGCCCGTTCCGTGGAGGGTCTTCCTCGGGGTCC
GATGGACACGAACGCGCAGTTGCAGCTGATTTTCCAGTACTACTGTCGTT
TCGGTCGCACAGGCGGGCGTGGGGAGGACGAGGAGACGGTGGACAACGTG
AACTTTGCCAAGTTTGCGCGGGAGTGTCCCGGTCTGCTGGACGAGCGTCT
GGATCGCACGGAAGTGGACTTGGTGTTTACAAAGTGCCGAGCAAAGCGAT
CACGTCGCCTCACGTATGCGCAGTTTCTGGATGCGCTTGCGGCGATGGCT
GCTGTCAAGTTTCCGTCCGAGGACCTGGCCACGGGGTTCGCCCTGCTCTT
GTCGCGCCACGTGTTCAATTCGCCTGAGCGTGCTGCGGAGGCTGCCCGTT
CCGTGGAGGGTCTTCCTCGGGGTCCGATGGACACGAACGCGCAGTTGCAG
CTGATTTTCCAGTACTACTGTCGTTTCGGTCGCACAGGCGGGCGTGGGGA
GGACGAGGAGACGGTGGACAACGTGAACTTTGCCAAGTTTGCGCGGGAGT
GTCCCGGTCTGCTGGACGAGCGTCTGGATCGCACGGAAGTGGACTTGGTG
TTTACAAAGTGCCGAGCAAAGCGATCACGTCGCCTCACGTATGCGCAGTT
TCTGGATGCGCTTGCGGCGATGGCTGCTGTCAAGTTTCCGTCCGAGGACC
TGGCCACGGGGTTCGCCCTGCTCTTGTCGCGCCACGTGTTCAATTCGCCT
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