mRNA_M-pyrifera_M_contig83812.19567.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83812.19567.1
Unique NamemRNA_M-pyrifera_M_contig83812.19567.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A2D7RZH1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7RZH1_9ACTN)

HSP 1 Score: 347 bits (891), Expect = 2.450e-114
Identity = 190/302 (62.91%), Postives = 220/302 (72.85%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGE--HEGDVLVFLPGAGDINRTAR----ALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESDQQHRRKD 888
            +MLEPRR+AARAAATR+A E G+ VG+ +GLRTR+DTRVS  TR+EVVTEGVLTRMLL DP L    VV+FDEFHERSIH DT LAF+RET   LR DLR+V+MSATL+   LA RL TDA+V+VEA  HPV    RPP PG       A A+++++G   H GD+LVFLPG G I R  R    AL  RL  + VV PLHG+L   +QD AL  DP+ RRKI+LATP+AETSVTIDGV  VID+G+RRRPE D GRGM  LRTV AS+AA DQR GRAGRQ PG CIRLW   D  HR  D
Sbjct:   52 LMLEPRRLAARAAATRMADERGEQVGDTIGLRTRNDTRVSAITRVEVVTEGVLTRMLLNDPALEGYAVVLFDEFHERSIHTDTALAFLRETVGALRPDLRIVVMSATLNTEALAARLRTDAVVKVEAERHPVTISHRPPDPGENLTSAAAAAIVDAVGSDAHAGDLLVFLPGVGAITRVERSVRRALDSRLDDELVVMPLHGSLRSDDQDAALRRDPRGRRKIVLATPLAETSVTIDGVATVIDAGQRRRPEIDHGRGMGVLRTVTASRAAADQRTGRAGRQQPGTCIRLWHAGDDAHRPAD 353          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A2D8GFB8_9ACTN (ATP-dependent helicase HrpB n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GFB8_9ACTN)

HSP 1 Score: 350 bits (898), Expect = 2.130e-111
Identity = 193/302 (63.91%), Postives = 221/302 (73.18%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGE--HEGDVLVFLPGAGDINRTAR----ALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESDQQHRRKD 888
            +MLEPRRVAARAAATR+A E  + VG+ +GLRTR+DTRVS  TR+EVVTEGVLTRMLL DP L    VV+FDEFHERSIH DT LAF+RET   LR DLR+V+MSATLDA  L  RL TDA+V+VEA  HPV    RPP PG    D  A AV++++G   H GD+LVFLPG G I R  R    AL  RL  + VV PLHG+L   +QD AL  DP+ RRKI+LATP+AETSVTIDGV  VID+G+RRRPE D GRGM  LRTV AS+AA DQR GRAGRQ PG CIRLW  +D  HR  D
Sbjct:   58 LMLEPRRVAARAAATRMAEERNEQVGDTIGLRTRNDTRVSAITRVEVVTEGVLTRMLLNDPALEGYAVVLFDEFHERSIHTDTALAFLRETVGALRPDLRIVVMSATLDAKALGGRLRTDAVVKVEAERHPVTISHRPPQPGEDLTDAAAAAVVDAVGSDAHAGDLLVFLPGVGAITRVERSVRRALGSRLDDELVVMPLHGSLRGNDQDAALRRDPRGRRKIVLATPLAETSVTIDGVATVIDTGQRRRPEIDHGRGMGVLRTVTASRAAADQRAGRAGRQQPGTCIRLWHAADDAHRPAD 359          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A7Y2DAC9_9ACTN (ATP-dependent helicase HrpB n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DAC9_9ACTN)

HSP 1 Score: 317 bits (813), Expect = 5.570e-99
Identity = 171/293 (58.36%), Postives = 206/293 (70.31%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESDQQHR 879
            ++LEPRRVAARAAA R+A  +G  VG  VG R R DT+VS  TR+EVVTEGVLTRML +DPGL  VGVVIFDEFHERS+HAD GLA   E +  LR DLR+V+MSATLD   +A  L    +V  +   HPV+T +RP   G     D    V  +L + +GD+LVFLPGAG I RT   L   L +  VVTPL+G L P EQDRAL  DP+ RRKIIL+T IAETS+TIDGVR+VIDSG RR P +D G G++ L+T+  S+AA DQRRGRAGRQGPG+C RLW + +   R
Sbjct:   57 LLLEPRRVAARAAAARLAEGVGDAVGRTVGFRVRHDTKVSARTRIEVVTEGVLTRMLQSDPGLESVGVVIFDEFHERSLHADVGLALTLEAAEALRPDLRVVVMSATLDGRAVAAALGGATVVRSDGRQHPVQTVYRPRPGGTDIETDTTATVELALPDADGDLLVFLPGAGWIRRTGDLLARHLPSSAVVTPLYGLLSPEEQDRALLPDPEGRRKIILSTDIAETSLTIDGVRLVIDSGLRRSPRFDPGSGLTRLQTISISKAAADQRRGRAGRQGPGVCYRLWSQHEHAQR 349          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: UPI001FEE1F24 (DEAD/DEAH box helicase n=2 Tax=unclassified Methylobacterium TaxID=2615210 RepID=UPI001FEE1F24)

HSP 1 Score: 304 bits (779), Expect = 7.900e-99
Identity = 162/288 (56.25%), Postives = 205/288 (71.18%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPES 864
            ++LEPRR+AAR AA R+AA LGQ VGE VGLR R  +++SRATR+EVVTEGV TRM+L DP LS +G VIFDEFHERS+ AD GLA   +  + LRDDLR+++MSATLD  +++  +    IVE E   +PVETR     P RR  D +ADA++ +L    G VL FLPG G+I R A  L  R+  +  + PL+GALPPAEQDRA+   P   RK++LAT IAETS+TI+GVRIV+DSG  R P Y+ G G++ L T  AS+A+ DQRRGRAGR  PG+C RLW E+
Sbjct:   61 ILLEPRRLAARGAAERMAATLGQRVGETVGLRVRLGSKISRATRIEVVTEGVFTRMILDDPELSGIGAVIFDEFHERSLDADLGLALALDAQSGLRDDLRILVMSATLDGARVSRLMGDARIVESEGRAYPVETRHTERDPNRRIEDAMADAILRALRADPGSVLAFLPGQGEIRRVASLLAERIDENIEIAPLYGALPPAEQDRAVAPAPPGTRKVVLATSIAETSLTIEGVRIVVDSGLSRVPVYEPGIGLTRLVTARASRASVDQRRGRAGRTEPGICHRLWSEA 348          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A679K748_9HYPH (Uncharacterized protein n=1 Tax=Methylobacterium bullatum TaxID=570505 RepID=A0A679K748_9HYPH)

HSP 1 Score: 304 bits (778), Expect = 6.460e-97
Identity = 162/288 (56.25%), Postives = 205/288 (71.18%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPES 864
            ++LEPRR+AAR AA R+AA LGQ VGE VGLR R  +++SRATR+EVVTEGV TRM+L DP LS +G VIFDEFHERS+ AD GLA   +  + LRDDLR+++MSATLD  +++  +    IVE E   +PVETR     P RR  D +ADA++ +L    G VL FLPG G+I R A  L  R+  +  + PL+GALPPAEQDRA+   P   RK++LAT IAETS+TI+GVRIV+DSG  R P Y+ G G++ L T  AS+A+ DQRRGRAGR  PG+C RLW E+
Sbjct:   61 ILLEPRRLAARGAAERMAATLGQRVGETVGLRVRLGSKISRATRIEVVTEGVFTRMILDDPELSGIGAVIFDEFHERSLDADLGLALALDAQSGLRDDLRILVMSATLDGARVSRLMGDARIVESEGRAYPVETRHTERDPNRRIEDAMADAILRALRADPGSVLAFLPGQGEIRRVASLLAERIDENIEIAPLYGALPPAEQDRAVAPAPPGTRKVVLATSIAETSLTIEGVRIVVDSGLSRVPLYEPGIGLTRLVTARASRASVDQRRGRAGRTEPGICHRLWSEA 348          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A7Y5N9Q8_9BACT (DEAD/DEAH box helicase (Fragment) n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7Y5N9Q8_9BACT)

HSP 1 Score: 297 bits (760), Expect = 5.340e-96
Identity = 166/290 (57.24%), Postives = 203/290 (70.00%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALT-GRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESD 867
            VMLEPRRVAARAAA R+A  +G+ VG IVG R R DTRV   TR+EVVTEGVLTRML  DP L DVG+++FDE+HERS+HAD GLA    + A+LR+DLR+++MSAT+D   +A  L    ++  E   +PVETR+   A   RA   VA AV  +L   EGDVL FLPGAG+I R A  L  G L    VVT L+GAL  AEQDRAL   P+ RRK++LAT IAETS+TI+GVR+V+DSG  R P +D G GM+ L T   S+A+ DQRRGRAGR  PG+C RLW E +
Sbjct:   84 VMLEPRRVAARAAARRMATTIGEEVGGIVGFRVRADTRVGPRTRIEVVTEGVLTRMLQDDPTLEDVGLLVFDEYHERSVHADLGLALALHSRALLREDLRILVMSATIDGAAVAALLDDAPVIRSEGRAYPVETRYLARATDDRADASVARAVRGALARDEGDVLAFLPGAGEIRRAASMLDEGTLGNVDVVT-LYGALSGAEQDRALAPAPRGRRKVVLATSIAETSLTIEGVRVVVDSGLARGPRFDPGSGMTRLETTRVSRASADQRRGRAGRTEPGVCYRLWAEHE 372          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A0Q4XQV0_9HYPH (ATP-dependent helicase n=12 Tax=Methylobacterium TaxID=407 RepID=A0A0Q4XQV0_9HYPH)

HSP 1 Score: 305 bits (780), Expect = 4.270e-94
Identity = 162/288 (56.25%), Postives = 205/288 (71.18%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPES 864
            ++LEPRR+AAR AA R+AA LG+ VGE VGLR R  +++SRATR+EVVTEGV TRM+L DP LS +G VIFDEFHERS+ AD GLA   +  + LRDDLR+++MSATLD  +++  +    IVE E   +PVETR     P RR  D +ADA++ +L    G VL FLPG G+I R A  L  R+   T + PL+GALPPAEQDRA+   P   RK++LAT IAETS+TI+GVRIV+DSG  R P Y+ G G++ L T  AS+A+ DQRRGRAGR  PG+C RLW E+
Sbjct:   61 ILLEPRRLAARGAAERMAATLGERVGETVGLRVRLGSKISRATRIEVVTEGVFTRMILDDPELSGIGAVIFDEFHERSLDADLGLALALDAQSGLRDDLRILVMSATLDGARVSRLMGDAPIVESEGRAYPVETRHTERDPNRRIEDAMADAILRALRADPGSVLAFLPGQGEIRRVASLLAERVDAQTEIAPLYGALPPAEQDRAVAPAPPGTRKVVLATSIAETSLTIEGVRIVVDSGLSRVPLYEPGIGLTRLVTARASRASVDQRRGRAGRTEPGICHRLWSEA 348          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: UPI00131D9068 (ATP-dependent helicase HrpB n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI00131D9068)

HSP 1 Score: 303 bits (777), Expect = 9.300e-94
Identity = 164/291 (56.36%), Postives = 203/291 (69.76%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLS--TDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESD 867
            ++LEPRR+AARAAATR+AA LG+ VG  VG R R  +RVSR TR+EVVTEGV TRM+L DP L  V  V+FDEFHERS+ AD GLA  R+  AVLRDDL+L++MSATLD  +++  L    I+E +   H VETR+    P  R  D  A AV  +LGE  G +LVFLPGA +I RT   L  RL    D  VTPL+GAL P  QDRA+   P  +RK++LAT IAETS+TI+GVR+VID+G  R P YD   G++ L+TV  S+AA DQRRGRAGR  PG+C RLW E++
Sbjct:   51 IVLEPRRLAARAAATRMAATLGEEVGRTVGYRVRMQSRVSRDTRIEVVTEGVFTRMILDDPALEGVAAVLFDEFHERSLDADLGLALARDAQAVLRDDLKLLIMSATLDGARISALLDDAPIIESQGRAHAVETRYLGRDPAMRVEDQAARAVRAALGEETGSILVFLPGAAEIRRTETLLNERLGGRDDIAVTPLYGALAPEVQDRAIAPSPPGKRKVVLATSIAETSLTIEGVRVVIDAGLSRVPRYDPSSGLTRLQTVRVSRAAADQRRGRAGRTEPGVCYRLWDEAE 341          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A7W0XMT4_9HYPH (ATP-dependent helicase HrpB (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W0XMT4_9HYPH)

HSP 1 Score: 294 bits (752), Expect = 2.060e-93
Identity = 156/287 (54.36%), Postives = 198/287 (68.99%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPE 861
            +++EPRR+AARAAA+RIA  +G+ VG  +G R R++T+VSR TR+E+VT GV  RM+LADPGL  V  V+FDE HER++  D GLA   +  + LRDDLRL+ MSATLD  + A  L    IVE +  L+ VET +    P +R  D VA AV++ L E  G +L FLPG G+I RTA  L G+L  D  + PL GAL P  QD A+   P  RRK++LAT IAETS+TI+GVR+V+DSG  RRP Y+ G G++ L TV  S+AA DQRRGRAGR GPGLC RLW E
Sbjct:   51 IVVEPRRLAARAAASRIAELMGEAVGRTIGYRVRNETKVSRETRIELVTAGVFVRMVLADPGLDGVAAVLFDEVHERAVDMDLGLALALDAQSGLRDDLRLLAMSATLDGRRFAALLGDAPIVESQGRLYSVETIYLGGDPAQRIEDRVARAVLKGLAEENGSILAFLPGQGEILRTAERLEGKLPPDVTLAPLFGALDPRVQDAAIRPAPPGRRKVVLATAIAETSLTIEGVRLVVDSGLSRRPRYEPGSGLARLETVRVSRAAADQRRGRAGRTGPGLCYRLWDE 337          
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Match: A0A7C1M1F4_9GAMM (ATP-dependent helicase HrpB (Fragment) n=1 Tax=Marinobacter sp. TaxID=50741 RepID=A0A7C1M1F4_9GAMM)

HSP 1 Score: 291 bits (744), Expect = 2.900e-93
Identity = 156/293 (53.24%), Postives = 208/293 (70.99%), Query Frame = 1
Query:    1 VMLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEGVLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRLVLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRP-PAPGR--RAADDVADAVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPAEQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGRGMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESDQ 870
            +MLEPRR+ AR+AA  +A +L +  G+ VG RTR DTRVS ATR+EVVTEG+LTR++ +DP L D G V+FDEFHERS+ AD GLA VRET   LRDDLR+++MSATLD   +A  L    ++  E    PV+  +RP PA  R  R  D V   +IE+L +  G VLVFLPGAG+I+R A+AL G+++++ V+ PL G L  AEQD+A+       RK++LAT IAETS+TI+GVR+V+DSG++RR  +D   GM+ L T   S+A+ +QR+GRAGR  PG+C RLW ES+Q
Sbjct:   62 LMLEPRRLVARSAARFMATQLAENAGQTVGYRTRLDTRVSSATRIEVVTEGILTRLIQSDPMLEDYGAVLFDEFHERSLQADLGLALVRETQEALRDDLRVLVMSATLDTAPIARMLGDVPVLSSEGRAFPVDVFYRPAPATQRHPRLVDQVVAVIIEALAQQPGSVLVFLPGAGEIHRVAQALAGQVTSNVVIAPLFGNLKAAEQDQAIAPAASGTRKVVLATAIAETSLTIEGVRVVVDSGQQRRAVFDPNSGMTRLVTGRVSKASAEQRKGRAGRVEPGVCYRLWSESEQ 354          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83812.19567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7RZH1_9ACTN2.450e-11462.91Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2D8GFB8_9ACTN2.130e-11163.91ATP-dependent helicase HrpB n=5 Tax=Acidimicrobiac... [more]
A0A7Y2DAC9_9ACTN5.570e-9958.36ATP-dependent helicase HrpB n=1 Tax=Acidimicrobial... [more]
UPI001FEE1F247.900e-9956.25DEAD/DEAH box helicase n=2 Tax=unclassified Methyl... [more]
A0A679K748_9HYPH6.460e-9756.25Uncharacterized protein n=1 Tax=Methylobacterium b... [more]
A0A7Y5N9Q8_9BACT5.340e-9657.24DEAD/DEAH box helicase (Fragment) n=1 Tax=Gemmatim... [more]
A0A0Q4XQV0_9HYPH4.270e-9456.25ATP-dependent helicase n=12 Tax=Methylobacterium T... [more]
UPI00131D90689.300e-9456.36ATP-dependent helicase HrpB n=1 Tax=Caulobacter sp... [more]
A0A7W0XMT4_9HYPH2.060e-9354.36ATP-dependent helicase HrpB (Fragment) n=1 Tax=Hyp... [more]
A0A7C1M1F4_9GAMM2.900e-9353.24ATP-dependent helicase HrpB (Fragment) n=1 Tax=Mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83812contigM-pyrifera_M_contig83812:2..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score308.1
Seed ortholog evalue4.3e-81
Seed eggNOG ortholog1131813.AQVT01000001_gene1031
Preferred namehrpB
KEGG koko:K03579
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM ATP-dependent helicase HrpB
EggNOG OGs1JRWZ@119045,1MUEQ@1224,2TRMJ@28211,COG1643@1,COG1643@2
EC3.6.4.13
COG Functional cat.L
Best tax levelMethylobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size888
Cds size885
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.949673-UTR-M-pyrifera_M_contig83812:1..41622816745.949673-UTR-M-pyrifera_M_contig83812:1..4Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83812 2..4 +
1692278153.4075463-UTR-M-pyrifera_M_contig83812:1..41692278153.4075463-UTR-M-pyrifera_M_contig83812:1..4Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83812 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.962739-CDS-M-pyrifera_M_contig83812:4..8891622816745.962739-CDS-M-pyrifera_M_contig83812:4..889Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83812 5..889 +
1692278153.419507-CDS-M-pyrifera_M_contig83812:4..8891692278153.419507-CDS-M-pyrifera_M_contig83812:4..889Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83812 5..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83812.19567.1prot_M-pyrifera_M_contig83812.19567.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83812 5..889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83812.19567.1

>prot_M-pyrifera_M_contig83812.19567.1 ID=prot_M-pyrifera_M_contig83812.19567.1|Name=mRNA_M-pyrifera_M_contig83812.19567.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=295bp
MLEPRRVAARAAATRIAAELGQPVGEIVGLRTRDDTRVSRATRLEVVTEG
VLTRMLLADPGLSDVGVVIFDEFHERSIHADTGLAFVRETSAVLRDDLRL
VLMSATLDAGQLAERLATDAIVEVEAPLHPVETRFRPPAPGRRAADDVAD
AVIESLGEHEGDVLVFLPGAGDINRTARALTGRLSTDTVVTPLHGALPPA
EQDRALTSDPQNRRKIILATPIAETSVTIDGVRIVIDSGRRRRPEYDIGR
GMSGLRTVDASQAATDQRRGRAGRQGPGLCIRLWPESDQQHRRKD
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mRNA from alignment at M-pyrifera_M_contig83812:2..889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83812.19567.1 ID=mRNA_M-pyrifera_M_contig83812.19567.1|Name=mRNA_M-pyrifera_M_contig83812.19567.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig83812:2..889+ (Macrocystis pyrifera P11B4 male)
GTCATGCTCGAGCCGCGCCGAGTCGCCGCCCGAGCGGCGGCCACCCGCAT CGCCGCGGAGCTGGGACAGCCCGTCGGGGAGATCGTCGGGTTGAGAACAC GCGACGACACTCGAGTGAGTCGGGCGACACGACTCGAAGTCGTCACCGAG GGCGTCTTGACGCGGATGTTGCTCGCCGACCCCGGGCTTTCCGACGTCGG CGTCGTGATCTTCGATGAGTTCCACGAACGGAGTATCCACGCCGACACCG GGCTGGCCTTCGTCCGCGAGACCTCGGCCGTGCTCCGCGACGACCTGCGG CTCGTGCTCATGTCCGCGACCCTCGACGCCGGACAACTCGCCGAGCGTCT CGCCACCGACGCCATCGTCGAGGTCGAAGCCCCACTGCACCCCGTCGAGA CCCGCTTCCGCCCACCCGCGCCCGGCCGGCGAGCAGCCGACGATGTCGCC GATGCGGTGATCGAGTCGCTCGGCGAGCACGAAGGAGACGTGCTGGTGTT CCTCCCGGGAGCTGGCGACATCAACCGAACCGCACGGGCGCTCACCGGTC GCCTGTCGACCGACACCGTGGTCACGCCACTGCACGGCGCGCTCCCGCCC GCCGAGCAGGATCGTGCCCTCACCTCCGACCCACAGAACCGACGCAAGAT CATCCTCGCCACTCCCATCGCCGAGACCAGCGTGACCATCGACGGTGTGC GGATCGTGATCGATTCCGGCCGCCGGCGTCGCCCGGAGTACGACATCGGC CGCGGGATGAGCGGGCTCCGCACCGTGGACGCCAGCCAGGCCGCAACCGA TCAGCGGCGTGGGCGAGCCGGTCGCCAGGGTCCCGGTCTGTGCATCCGGC TGTGGCCCGAATCGGATCAACAACACCGCCGCAAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83812:2..889+

>mRNA_M-pyrifera_M_contig83812.19567.1 ID=mRNA_M-pyrifera_M_contig83812.19567.1|Name=mRNA_M-pyrifera_M_contig83812.19567.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1770bp|location=Sequence derived from alignment at M-pyrifera_M_contig83812:2..889+ (Macrocystis pyrifera P11B4 male)
ATGCTCGAGCCGCGCCGAGTCGCCGCCCGAGCGGCGGCCACCCGCATCGC
CGCGGAGCTGGGACAGCCCGTCGGGGAGATCGTCGGGTTGAGAACACGCG
ACGACACTCGAGTGAGTCGGGCGACACGACTCGAAGTCGTCACCGAGGGC
GTCTTGACGCGGATGTTGCTCGCCGACCCCGGGCTTTCCGACGTCGGCGT
CGTGATCTTCGATGAGTTCCACGAACGGAGTATCCACGCCGACACCGGGC
TGGCCTTCGTCCGCGAGACCTCGGCCGTGCTCCGCGACGACCTGCGGCTC
GTGCTCATGTCCGCGACCCTCGACGCCGGACAACTCGCCGAGCGTCTCGC
CACCGACGCCATCGTCGAGGTCGAAGCCCCACTGCACCCCGTCGAGACCC
GCTTCCGCCCACCCGCGCCCGGCCGGCGAGCAGCCGACGATGTCGCCGAT
GCGGTGATCGAGTCGCTCGGCGAGCACGAAGGAGACGTGCTGGTGTTCCT
CCCGGGAGCTGGCGACATCAACCGAACCGCACGGGCGCTCACCGGTCGCC
TGTCGACCGACACCGTGGTCACGCCACTGCACGGCGCGCTCCCGCCCGCC
GAGCAGGATCGTGCCCTCACCTCCGACCCACAGAACCGACGCAAGATCAT
CCTCGCCACTCCCATCGCCGAGACCAGCGTGACCATCGACGGTGTGCGGA
TCGTGATCGATTCCGGCCGCCGGCGTCGCCCGGAGTACGACATCGGCCGC
GGGATGAGCGGGCTCCGCACCGTGGACGCCAGCCAGGCCGCAACCGATCA
GCGGCGTGGGCGAGCCGGTCGCCAGGGTCCCGGTCTGTGCATCCGGCTGT
GGCCCGAATCGGATCAACAACACCGCCGCAAGGACATGCTCGAGCCGCGC
CGAGTCGCCGCCCGAGCGGCGGCCACCCGCATCGCCGCGGAGCTGGGACA
GCCCGTCGGGGAGATCGTCGGGTTGAGAACACGCGACGACACTCGAGTGA
GTCGGGCGACACGACTCGAAGTCGTCACCGAGGGCGTCTTGACGCGGATG
TTGCTCGCCGACCCCGGGCTTTCCGACGTCGGCGTCGTGATCTTCGATGA
GTTCCACGAACGGAGTATCCACGCCGACACCGGGCTGGCCTTCGTCCGCG
AGACCTCGGCCGTGCTCCGCGACGACCTGCGGCTCGTGCTCATGTCCGCG
ACCCTCGACGCCGGACAACTCGCCGAGCGTCTCGCCACCGACGCCATCGT
CGAGGTCGAAGCCCCACTGCACCCCGTCGAGACCCGCTTCCGCCCACCCG
CGCCCGGCCGGCGAGCAGCCGACGATGTCGCCGATGCGGTGATCGAGTCG
CTCGGCGAGCACGAAGGAGACGTGCTGGTGTTCCTCCCGGGAGCTGGCGA
CATCAACCGAACCGCACGGGCGCTCACCGGTCGCCTGTCGACCGACACCG
TGGTCACGCCACTGCACGGCGCGCTCCCGCCCGCCGAGCAGGATCGTGCC
CTCACCTCCGACCCACAGAACCGACGCAAGATCATCCTCGCCACTCCCAT
CGCCGAGACCAGCGTGACCATCGACGGTGTGCGGATCGTGATCGATTCCG
GCCGCCGGCGTCGCCCGGAGTACGACATCGGCCGCGGGATGAGCGGGCTC
CGCACCGTGGACGCCAGCCAGGCCGCAACCGATCAGCGGCGTGGGCGAGC
CGGTCGCCAGGGTCCCGGTCTGTGCATCCGGCTGTGGCCCGAATCGGATC
AACAACACCGCCGCAAGGAC
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