mRNA_M-pyrifera_M_contig83563.19518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83563.19518.1
Unique NamemRNA_M-pyrifera_M_contig83563.19518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: A0A1S3K4K1_LINUN (uncharacterized protein LOC106178780 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K4K1_LINUN)

HSP 1 Score: 108 bits (269), Expect = 5.290e-24
Identity = 61/166 (36.75%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   52 LEALLKEIGPPLTSQKGS-LIYLAEGGSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFCSQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIASGSK--TERAGKLFYHALHKLAGLQ 540
            L +L+K+IG P+ S +   ++ +A+ GS +Y+L+TP+SD D++ V+L  T  ++SS     ES EN+G Q + E+  +EAR+  EML KG+  ++EL+F+    + S  +  L  H++  ++E A+ QY   VK ++  I  G    T R  KLFY   HKL  L+
Sbjct:  377 LLSLMKKIGGPVASMEPEQIVMIAQAGSYLYDLATPDSDVDYIIVYLTPTEKIISSCGIGNESYENRGPQKQFEYGAYEARLFCEMLSKGSVVILELVFSLDLEYTSSAWRELVSHKQDFVTETAIQQYLGLVKNNMKMIEGGKHQGTSRERKLFYQTFHKLDSLE 542          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: A0A8J1TUM9_OWEFU (Ofus.G0696 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TUM9_OWEFU)

HSP 1 Score: 102 bits (255), Expect = 3.820e-22
Identity = 56/169 (33.14%), Postives = 101/169 (59.76%), Query Frame = 1
Query:   43 DEKLEALLKEIGPPLTSQKGS-LIYLAEGGSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFCSQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIASGSK--TERAGKLFYHALHKLAGLQ 540
            +E L +L +++G  + + K   ++ +A+ GS++Y+L+TP+SD DFV ++      +L +  +  E  E++G + + E+  +EAR+  EMLLKG+  ++ELLFA    + S  ++ L  H+   ++E A++QY   +K ++  I +     T+R GKLFY   HKL  L+
Sbjct:  330 EEYLGSLKRKVGGHVEAMKPEQILMVAQAGSKLYDLATPDSDVDFVIIYAEPIEKILGTSKRLNECDESRGPKKQFEYGSYEARLFCEMLLKGSVVILELLFADDLEYTSAAWKELSSHKELFVTERAILQYFGLIKNNMIMIENEKHRGTKREGKLFYQIFHKLNSLE 498          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: R7TL89_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TL89_CAPTE)

HSP 1 Score: 84.7 bits (208), Expect = 7.590e-16
Identity = 53/171 (30.99%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   22 CHVICDNDEKLEALLKEIGPPLTS--QKGSLIYLAEGGSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFCSQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIA----SGSKTERAGKLFYHA 516
            C +  +N  K+E LL + G           ++ +A+ GS +Y L TP+SD D+V ++      +L +     ES+E +G +  +E   +EAR++ EML K +  ++EL+FA    + S  ++ L+ ++   ++E A+VQY   +K ++A I     SG   ER  K+FY A
Sbjct:  354 CALTPENQLKVETLLGQAGSEAVRGMPASDILLIAQAGSHLYGLKTPDSDIDYVIIYRTPLKTILGTCRTLTESSECRGPEKSVEFGTYEARLLTEMLWKCSVVMLELVFADDLEYVSPLWKVLQDNKSVFVTEKAIVQYLGLIKNNMALIENKKHSGKPRER--KIFYQA 522          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: F4Q1V6_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q1V6_CAVFA)

HSP 1 Score: 68.2 bits (165), Expect = 4.320e-10
Identity = 50/147 (34.01%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   67 KEIGPPLTSQK---GSLIYLAEGGSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFCSQEFEFLRQHRRKLISEYAMVQYDSWVKWHL--ARIASGSKTER 492
            K++G  L  +K     L++  + GS  +NL+   SD+D+ GV+  D   +LS  L    +A   G Q   +   +E     E+LLKGNP +VE LF     + SQ++E LR  R   IS+  +  Y S+ K  L  A+ A   KT R
Sbjct:   13 KKLGEDLLKEKKVKAQLLFFCQVGSHSFNLNVETSDNDYFGVYELDADQLLSLTLSP-HAALIDGHQPE-DFVLYELSKFCELLLKGNPKLVEPLFTERNCYISQKWEQLRSIRHSFISQLVISHYVSYSKSQLGDAKKAQNEKTSR 157          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: A0A267EYT9_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EYT9_9PLAT)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-7
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  127 GSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFA-PSAHFC-SQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIASG---------SKTERAGKLFYHALHKLAGLQCLA 549
            GSRMY LSTP+SD D++ V+          +    ++ E++G    IE  C EA   A  LL+G+   +ELLFA P+A  C S  F++L Q R +L +E  + Q        +  ++           ++  + GK  Y   HKL  L  LA
Sbjct:   47 GSRMYGLSTPQSDVDYLLVY--SRRDEFRHLRHPPDTTESRGPDKTIEFGCCEAAEFARQLLRGSIVHLELLFAQPAARLCVSPAFDWLLQRRMRLATENFIRQLLGLASQLVRTLSKAEVNPDQFPPAEARKVGKAAYQLEHKLNLLTDLA 196          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: A0A267DKT4_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DKT4_9PLAT)

HSP 1 Score: 59.3 bits (142), Expect = 4.620e-7
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  127 GSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFA-PSAH-FCSQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIASG---------SKTERAGKLFYHALHKLAGLQCLA 549
            GSRMY LSTP+SD D++ V+          +    ++ E++G    IE  C EA   A  LL+G+   +ELLFA P+A  F S  F++L Q R +L +E  + Q        +  ++           ++  + GK  Y   HKL  L  LA
Sbjct:  276 GSRMYGLSTPQSDVDYLLVY--SRRDEFRHLRHPPDTTESRGPDKTIEFGCCEAAEFARQLLRGSIVQLELLFAQPAARLFVSPAFDWLLQRRMRLATENFIRQLLGLASQLVRTLSKAEVNPDQFPPAEARKVGKAAYQLEHKLNLLTDLA 425          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: UPI000644C5B9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C5B9)

HSP 1 Score: 59.3 bits (142), Expect = 4.760e-7
Identity = 36/131 (27.48%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  106 LIYLAEGGSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFCSQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIASGSKTERAG 498
            L++    GS  +NLS   SD D+ GV+  +   +LS+ + +    +       ++   +E    A++LLKGNP ++E LF     + S+E+  LR  R   +S+  +  Y S+ K  L      +    AG
Sbjct:   24 LVFFCMVGSHSFNLSVETSDCDYFGVYALNAEQILSNAVTQAPLIDG---HEPVDFVMYEMERFAQLLLKGNPKLIEPLFTERNCYMSEEWLKLRAMRHSFVSQQVIHHYVSYSKAQLGDAKRAAADRDAG 151          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: A0A097EY87_9CAUD (Nucleotidyltransferase n=11 Tax=root TaxID=1 RepID=A0A097EY87_9CAUD)

HSP 1 Score: 58.5 bits (140), Expect = 7.900e-7
Identity = 32/118 (27.12%), Postives = 60/118 (50.85%), Query Frame = 1
Query:  127 GSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFC--SQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIAS 474
            GS+ Y  STPESD+D+ G+FL +   +L+   K KE A+   +  +     +E     ++  + NPN++E L+    H    ++ +++LR   +KL+S      Y  +    + R+ +
Sbjct:   16 GSQAYGTSTPESDTDYRGIFLANKEFILTPFYKVKEVADKSEEDTKF----YELNQYLKLYTEANPNILESLWVEPEHIVESTEIYDYLRSFNQKLLSSKIAFSYTGYAYNQIKRMTN 129          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: A0A411BFW7_9CAUD (Nucleotidyltransferase n=2 Tax=root TaxID=1 RepID=A0A411BFW7_9CAUD)

HSP 1 Score: 53.5 bits (127), Expect = 4.110e-5
Identity = 29/118 (24.58%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  127 GSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHFC--SQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIAS 474
            GS+ Y  STPESD+D+ G+FL +   +L+     KE ++   +  +     +E      +  + NPN++E L+    H    ++ +++LR   ++L+S      Y  +    + R+++
Sbjct:   16 GSQAYGTSTPESDTDYRGIFLANKEYILTPFFNVKEVSDTSEEDTKF----YEINQYLSLYTEANPNILESLWVKPEHIVESTEIYDYLRSFNQQLLSSKIAHSYSGYAYNQVKRMSN 129          
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Match: UPI001EF83A8B (nucleotidyltransferase domain-containing protein n=2 Tax=Brevibacillus fulvus TaxID=1125967 RepID=UPI001EF83A8B)

HSP 1 Score: 52.8 bits (125), Expect = 4.810e-5
Identity = 38/148 (25.68%), Postives = 65/148 (43.92%), Query Frame = 1
Query:  106 LIYLAEGGSRMYNLSTPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMAEMLLKGNPNVVELLFAPSAHF--CSQEFEFLRQHRRKLISEYAMVQYDSWVKWHLARIASGSKTERAGKLFYHALHKLAGLQC 543
            LI L   GS  Y ++T  SD D  G+       V      ++ +       A  +   +       + +KGNP ++E+LFA + H+  C++E E LR HR   +S+     +  +   HL ++++ +    A      A H +  LQC
Sbjct:   16 LISLVLAGSHGYGMATETSDIDLRGIAYPPPEAVFGLQTYEQTTL------AEPDTVIYSLPKFVRLAMKGNPTLLEMLFAETEHWLICTEEGERLRAHRHLFLSKRVFYSFGGYAYKHLQKLSAQADNPSASYHGKDASHLIRLLQC 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83563.19518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1S3K4K1_LINUN5.290e-2436.75uncharacterized protein LOC106178780 isoform X1 n=... [more]
A0A8J1TUM9_OWEFU3.820e-2233.14Ofus.G0696 protein n=1 Tax=Owenia fusiformis TaxID... [more]
R7TL89_CAPTE7.590e-1630.99Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
F4Q1V6_CAVFA4.320e-1034.01Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A267EYT9_9PLAT1.160e-732.24Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A267DKT4_9PLAT4.620e-732.24Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
UPI000644C5B94.760e-727.48hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A097EY87_9CAUD7.900e-727.12Nucleotidyltransferase n=11 Tax=root TaxID=1 RepID... [more]
A0A411BFW7_9CAUD4.110e-524.58Nucleotidyltransferase n=2 Tax=root TaxID=1 RepID=... [more]
UPI001EF83A8B4.810e-525.68nucleotidyltransferase domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83563contigM-pyrifera_M_contig83563:3..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue7.4e-23
Seed eggNOG ortholog6500.XP_005108346.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Predicted nucleotidyltransferase
EggNOG OGs2SDKU@2759,COG3541@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.126224-CDS-M-pyrifera_M_contig83563:2..5541622816743.126224-CDS-M-pyrifera_M_contig83563:2..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83563 3..554 -
1692278151.871597-CDS-M-pyrifera_M_contig83563:2..5541692278151.871597-CDS-M-pyrifera_M_contig83563:2..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83563 3..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83563.19518.1prot_M-pyrifera_M_contig83563.19518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83563 3..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83563.19518.1

>prot_M-pyrifera_M_contig83563.19518.1 ID=prot_M-pyrifera_M_contig83563.19518.1|Name=mRNA_M-pyrifera_M_contig83563.19518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
EGEKIATCHVICDNDEKLEALLKEIGPPLTSQKGSLIYLAEGGSRMYNLS
TPESDSDFVGVFLWDTSVVLSSILKKKESAENKGKQARIEHSCFEARMMA
EMLLKGNPNVVELLFAPSAHFCSQEFEFLRQHRRKLISEYAMVQYDSWVK
WHLARIASGSKTERAGKLFYHALHKLAGLQCLAR
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mRNA from alignment at M-pyrifera_M_contig83563:3..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83563.19518.1 ID=mRNA_M-pyrifera_M_contig83563.19518.1|Name=mRNA_M-pyrifera_M_contig83563.19518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig83563:3..554- (Macrocystis pyrifera P11B4 male)
GAGGGAGAAAAGATCGCCACCTGTCACGTTATTTGTGACAATGATGAGAA GCTCGAGGCACTGCTCAAGGAGATTGGGCCTCCGCTCACTTCGCAGAAGG GCTCACTGATCTATCTGGCAGAGGGTGGTAGCAGGATGTACAACCTCTCA ACCCCCGAGTCAGACAGTGATTTTGTTGGTGTGTTTTTGTGGGACACATC AGTGGTGCTATCATCGATCTTAAAGAAGAAAGAGAGTGCAGAGAACAAGG GAAAGCAAGCGAGGATCGAGCACAGTTGCTTCGAGGCTCGCATGATGGCG GAGATGCTCCTGAAGGGGAACCCCAACGTGGTGGAGCTCCTCTTTGCGCC CTCAGCACACTTCTGCTCGCAGGAATTCGAATTCCTCAGACAGCACAGGC GAAAGCTCATCAGCGAGTACGCAATGGTGCAGTACGACAGCTGGGTGAAG TGGCACCTCGCTCGCATTGCCAGTGGGAGCAAGACAGAGCGTGCTGGCAA GCTCTTCTACCACGCCCTCCACAAGCTGGCGGGCCTGCAGTGCTTGGCAC GT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83563:3..554-

>mRNA_M-pyrifera_M_contig83563.19518.1 ID=mRNA_M-pyrifera_M_contig83563.19518.1|Name=mRNA_M-pyrifera_M_contig83563.19518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig83563:3..554- (Macrocystis pyrifera P11B4 male)
GAGGGAGAAAAGATCGCCACCTGTCACGTTATTTGTGACAATGATGAGAA
GCTCGAGGCACTGCTCAAGGAGATTGGGCCTCCGCTCACTTCGCAGAAGG
GCTCACTGATCTATCTGGCAGAGGGTGGTAGCAGGATGTACAACCTCTCA
ACCCCCGAGTCAGACAGTGATTTTGTTGGTGTGTTTTTGTGGGACACATC
AGTGGTGCTATCATCGATCTTAAAGAAGAAAGAGAGTGCAGAGAACAAGG
GAAAGCAAGCGAGGATCGAGCACAGTTGCTTCGAGGCTCGCATGATGGCG
GAGATGCTCCTGAAGGGGAACCCCAACGTGGTGGAGCTCCTCTTTGCGCC
CTCAGCACACTTCTGCTCGCAGGAATTCGAATTCCTCAGACAGCACAGGC
GAAAGCTCATCAGCGAGTACGCAATGGTGCAGTACGACAGCTGGGTGAAG
TGGCACCTCGCTCGCATTGCCAGTGGGAGCAAGACAGAGCGTGCTGGCAA
GCTCTTCTACCACGCCCTCCACAAGCTGGCGGGCCTGCAGTGCTTGGCAC
GTGAGGGAGAAAAGATCGCCACCTGTCACGTTATTTGTGACAATGATGAG
AAGCTCGAGGCACTGCTCAAGGAGATTGGGCCTCCGCTCACTTCGCAGAA
GGGCTCACTGATCTATCTGGCAGAGGGTGGTAGCAGGATGTACAACCTCT
CAACCCCCGAGTCAGACAGTGATTTTGTTGGTGTGTTTTTGTGGGACACA
TCAGTGGTGCTATCATCGATCTTAAAGAAGAAAGAGAGTGCAGAGAACAA
GGGAAAGCAAGCGAGGATCGAGCACAGTTGCTTCGAGGCTCGCATGATGG
CGGAGATGCTCCTGAAGGGGAACCCCAACGTGGTGGAGCTCCTCTTTGCG
CCCTCAGCACACTTCTGCTCGCAGGAATTCGAATTCCTCAGACAGCACAG
GCGAAAGCTCATCAGCGAGTACGCAATGGTGCAGTACGACAGCTGGGTGA
AGTGGCACCTCGCTCGCATTGCCAGTGGGAGCAAGACAGAGCGTGCTGGC
AAGCTCTTCTACCACGCCCTCCACAAGCTGGCGGGCCTGCAGTGCTTGGC
ACGT
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