mRNA_M-pyrifera_M_contig8348.19493.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8348.19493.1
Unique NamemRNA_M-pyrifera_M_contig8348.19493.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8348.19493.1 vs. uniprot
Match: A0A8J3AA54_9ACTN (GMP synthase n=1 Tax=Egicoccus halophilus TaxID=1670830 RepID=A0A8J3AA54_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 6.360e-6
Identity = 25/64 (39.06%), Postives = 33/64 (51.56%), Query Frame = 1 
Query:   82 RLLYHHNDEVVKLPPGATNISTSRHCQIHGMIMDTEGEGEEPRPNILAFQAHPELNYEYGRRVM 273
            RLL  H D+VV+LP GAT ++TSRH  +     D          N+L FQ HPE    Y   ++
Sbjct:  142 RLLVSHQDQVVRLPEGATRVATSRHAPVAAFQRD----------NVLGFQGHPEFTPPYAEALL 195
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BLAST of mRNA_M-pyrifera_M_contig8348.19493.1 vs. uniprot
Match: A0A7X7HTC3_9ACTN (GATase domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HTC3_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 2.490e-5
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:   70 PPRMRLLYHHNDEVVKLPPGATNISTSRHCQIHGMIMDTEGEGEEPRPNILAFQAHPELNYEYGRRVMDGILD 288
            P  + LL  H D+V +LP GAT +++S HC +    +     GE     +LA QAHPE   E  R +++G ++
Sbjct:  153 PAHLDLLAMHQDQVTRLPEGATVLASSEHCPVAAYSL-----GER----VLAVQAHPEFTPELTRELIEGRIE 216
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BLAST of mRNA_M-pyrifera_M_contig8348.19493.1 vs. uniprot
Match: UPI0007861F7A (hypothetical protein n=1 Tax=Endozoicomonas arenosclerae TaxID=1633495 RepID=UPI0007861F7A)

HSP 1 Score: 50.1 bits (118), Expect = 8.320e-5
Identity = 23/65 (35.38%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:   79 MRLLYHHNDEVVKLPPGATNISTSRHCQIHGMIMDTEGEGEEPRPNILAFQAHPELNYEYGRRVM 273
             RL+++H D+VV+LP GA  I ++ +C I  M++           +IL  Q HPE   EY R ++
Sbjct:  141 FRLIFNHQDQVVRLPEGAELIGSTPNCPIAAMLIGD---------HILTLQGHPEFTPEYARELL 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8348.19493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J3AA54_9ACTN6.360e-639.06GMP synthase n=1 Tax=Egicoccus halophilus TaxID=16... [more]
A0A7X7HTC3_9ACTN2.490e-535.62GATase domain-containing protein n=1 Tax=Acidimicr... [more]
UPI0007861F7A8.320e-535.38hypothetical protein n=1 Tax=Endozoicomonas arenos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8348contigM-pyrifera_M_contig8348:619..5062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClass I glutamine amidotransferase-like
Ec32 orthologEc-19_005010.1
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8348.19493.1prot_M-pyrifera_M_contig8348.19493.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8348 619..5062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.8323476-CDS-M-pyrifera_M_contig8348:618..7261622816741.8323476-CDS-M-pyrifera_M_contig8348:618..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8348 619..726 +
1692278151.1099815-CDS-M-pyrifera_M_contig8348:618..7261692278151.1099815-CDS-M-pyrifera_M_contig8348:618..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8348 619..726 +
1622816741.8456697-CDS-M-pyrifera_M_contig8348:1158..12811622816741.8456697-CDS-M-pyrifera_M_contig8348:1158..1281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8348 1159..1281 +
1692278151.1270928-CDS-M-pyrifera_M_contig8348:1158..12811692278151.1270928-CDS-M-pyrifera_M_contig8348:1158..1281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8348 1159..1281 +
1622816741.858038-CDS-M-pyrifera_M_contig8348:4948..50621622816741.858038-CDS-M-pyrifera_M_contig8348:4948..5062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8348 4949..5062 +
1692278151.1380093-CDS-M-pyrifera_M_contig8348:4948..50621692278151.1380093-CDS-M-pyrifera_M_contig8348:4948..5062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8348 4949..5062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8348.19493.1

>prot_M-pyrifera_M_contig8348.19493.1 ID=prot_M-pyrifera_M_contig8348.19493.1|Name=mRNA_M-pyrifera_M_contig8348.19493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
VRRNKEGGGGGRGRVGGQGDRGLPPRMRLLYHHNDEVVKLPPGATNISTS
RHCQIHGMIMDTEGEGEEPRPNILAFQAHPELNYEYGRRVMDGILDADVK
AGRLTHEKARRLKEQ
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mRNA from alignment at M-pyrifera_M_contig8348:619..5062+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8348.19493.1 ID=mRNA_M-pyrifera_M_contig8348.19493.1|Name=mRNA_M-pyrifera_M_contig8348.19493.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4444bp|location=Sequence derived from alignment at M-pyrifera_M_contig8348:619..5062+ (Macrocystis pyrifera P11B4 male)
GTTCGACGAAATAAGGAAGGTGGTGGAGGGGGGAGGGGGCGAGTCGGGGG
GCAAGGGGACCGGGGCCTGCCTCCGCGGATGCGACTCCTTTACCATCACA
ACGATGAGGTGTGGTCCTGCCGCCCAAGAATGCCGCCTCTGTATGTATTT
ATAAAATTAAAAAGAAACAGCTGTGAGATCGAATATTTCGTCGGTTCTCC
TCTTTGCAAGCTGTGCGTCATGCTATTGCGGTGACGATGCGGTCGCTCTT
CCGACGGGCTTTTGATGGCCAGACTGCCCTTCGACGTATCGGCTCATGAA
ACCAAAACAAGCAGTCATTTTTCACTTTTGTTTTGGCCCCCGTTTGCACT
GTAAAATACGTCATTTTTTTTGGGGTTCATTGTTTTTGGCGCCTTCTTAT
TATCGGAGGACAAACGTGATCTTCATAACACCAGAATATCCGTGTAAACA
CGTCCAACAACTTCAGGACGTAAAGACCCTGTTTCGGGCAGCTTGATCGT
ACCCCCCCCCCCCTCTTCCCGTCCCGCACACCCGCCGCAGGTTGTCAAAC
TCCCTCCTGGGGCCACGAACATTTCGACGTCGCGTCACTGTCAGATCCAC
GGCATGATCATGGACACGGAGGGCGAGGGCGAGGAGCCAAGGCCGAATAT
CTTGGCGTTTCAGGTATAGTATTACGAGGGTCCATAGTTAATAGGACCTA
CGGTACGCATAAAAACCTATATATTTACCTATTTTTACTAACAAAATTTG
GTCCCGTTAACTATGGACCCCCGTAATAATAATATGGTAATGTGGTACAG
TAGATACTTCCGTTCAAGGGACCCTAGGTAGTGCGTCAGGGACGAGGGTT
CTCTCTGTTAGACGAACGTTCCTGATCAGCTTTTGCCCCACTTAAGAATC
GGAAGAAACGACGCGCAGGAATTTGAGGTCCCTCAGACCTGCGACAATGG
AAATGCGAAGCCGAAAACTTTTCTTTCAAAAGTATGGTTTTCAAAGAACG
GCCGAAGATGTCCTCGTACACCCGCTGTAGGAAGAAAGGGAAAAAAATGT
TTAAATTTTTCCTTTTTTTTTTTTTTCAAACGGCTGCGGGCGGCGCAATT
TGGTTTTTCTCGTTTCTATTTTTCAAGACGACGCTGATAAAAAACTGCTC
GTGCGACGATAGACGTTCGATCTCGACATATAGACTCAGCCCAAGGCCAA
CCCGCTTGGTGTCGGGCAAGGCCAACGAGTATAGATGACGACCTCGAAGA
TATCAGGTGGCTCCATGGTCTAGGGGGCGAGAGCTTGCCGGCGGCGTCCT
ACGGTTAAAAACTGTTTTTTTGCCGTCGGAGACGGACACAGATTTTTTGT
CATCTGTTTTGTGCACACCAGCGGCCAATTGTTTTTTTTTCATACGCCTG
GCCAGCGCCCGAACCGTATCACCGACCGAGGTGTGAGCACTAAACTGTGA
CACTAGGGTGGGTCGGAGACCCCAACCAGCGCACTCCGTTCATAGTTCAT
GACACGGTCGTTGGTTTTGTCGATCGATGCCTGTCGAGGACTCGGAGTCT
CGCCGCTTCGGACTATAAACATCCACCCGAGTTTTTCTGAAGCCAACCTT
GGCCCAACATCGGCCCCAGAATTGTTTTCTCGGTGTTTTCCAAAACCTTG
GAACTTCCCTTTTTGGAATCGTGCTCATGGCAAAGCTGTACCTGAAAAAT
TCCGGTGGGTATCTTTGGAACTTAAACTTTTTATCGAAAAATTGCGTTTC
CATTGGCATAAATCTTCTATACCGGTGTCCCTCATGGTGGGGCCCCTTGT
AGGGAACTATTAGTACCTACTCTTACTGTATTACGGTGTGGGGGGACATG
AGCGTATATTTCCGCGGCACCGAACACTGGTGCTTCTGTCGTGTGTTTTG
CATGGATGGCAGTTACGGAAAACACGCCAAAATCAGAAAACCATGGCACC
TACCGCATGTTGTCTAAAAGGCGGGGCGTTTCTGAAAAATCCCCGGGGGG
GAAGGATAAGAACCATCCCTGGAGGTGGCGTGACCTCGTGCCCCCCCCGC
TCTCAGTAACCAGTGTGCTGTGTGTTGCTGGTGGTGTGAATTTCGAAAAA
TCAGGGGTTTCCAGTAGATCTGTAGGAGGCGTTATTCACCAGTGGGTAGG
GGATACAAAAGTTAACTGAAAAAACTTGTTATATTACTACCGCTGACACG
TGTTACCGCAAACTTACCGGCTATAGGTAACTGCCATCCCTGGCATTTTG
TGCAGTGGATCCTCGATGAGCACCGGCATAGGAACCCCGAAATTCGGAAC
CGTGACAGAGACCGAAAGGGAACAGAAATCGTAAGCGAAACCGAATCCGA
TACTGAAACTAATACTATATCCGATGCCGAAACCTAAACCAAACCCGATA
ACGAAACCGAAGCCAACATCGGATCTGAAATCGAAAATGAAACCGAAGTT
GGACGAGATCTCGAAACCGAAACGGAAACCGAAACTGAAACCGAAGCCAA
ACACGAACTCGAAACCGAAGCAGGAACAGAAACAGAAGCAGAAACAGACT
CCACACCGAAACCGAAACCGAAACCGACATAAACGCAGGGATCGAACCCG
AATCTGAAACCGAACTAGAAACCGAAAACCGAAGTGTAACCGAAAACGGA
ACAGTTATCGAAATTAAAATCGAAACTGAAACCGAAACCGAAATTAAACC
CGAACACGAAACCGAGCTCAATATCCAAGCCGAAACTGCTTTGACCCCAA
AACAGAAACCGAGACGGAGAGCGAGACCGGAACAAACCTGATGTTAACCC
CGGAACCGAAACCGAACCCAAAACCGAAACCGAAATAAAAATCAAAACCG
AATTTGAACTTGAATTCGAAACTGAAACTGAACCAATGTTGACAGTGAAA
CCGAAACCAAACCCGAAACCGAAAGTTGAGACTGAAATCGAAACCAACAC
CGAAACAAAAATCGAAACCAAAACGAAACCAAAACGAAACCCAGAACCAC
CCCCGAAACCGAAACCGAGACTTACCCAAGTTGAAACCAAAGCCAATACC
AGACTGACGCCCCTACCGAAACTGAGATCGAGGCCAGAGCCGAAACCGAA
ACCGAAACCGAAACCGAAACCGAAATTGAAGCCGAAACTGAAACCAAAAT
CGACCTTGAAACCGAAACCAAATCCAAAGTCGGAATCAAAACCGAAACTG
CAACCGAAACCGCAACTGAAATCGAGTCCGAAACCTAACCCGACACGTTA
CAACTATACTGGGTGACCACCTAAGGTAGCTACTTATGGGTGGAATGCTG
ACTCTCGGCTGGACGGTCTTTCCCGCGTTTTTTTTTTCTGGCGGTAGACA
GGGTGCGTGCCTTGCTGTCCAGAGTGCGTATGTGACAGCATACGTATCAT
ATGTCGATAGCGACAACCGTTTTAATAGTGCTGTGTACACAACATATTAC
GGGTGGGGGCTTAATGAGCTCGGAAAGTAAGGTACCATAAGGTGCCTTAA
GGTACCACCCCTAAAAAAGACCACCCCCTGCCGTAGCATTTGTCTAACCC
TCTTACTTTAATTCCAAGTCATTTGTCCCGGAAATGGGCGTGCGGTCGGT
AAGCGGGTTAATAGCCTTTCCGGTAGTTGAGCGGGAAACACGACAGAACA
TACCTAAGAAGTGATCCTGGGGTAGAGGATGAAGGGCAGCCGAAGGAGAT
AATTTCCACCGAAACCTGCTCCCCTCGGGGCTGAGGTCGGGTCGACATAT
TCACGCTCCCGAGAAGGTATATATGATAGCAGCAGCCGGTCCTGCTGTTG
CAGCGGAATCGACGGGCTACATTTTACTCACGACACGTATCTTGTGTGTG
GGCGTGTGGTGAGCTTGGAGTTTTTTTTTTTTACCAATCCGTCGGGAGTA
CGAAAAAAAATATTTATACATACCTTGGTAGAAATTGTGATAACAAAAAA
ACAGATGGTGTGACAACGCACGGTATGACGATTTCTGCTTGTACTGCTGC
TGTTGTTGCAGGATCTTACGTTCTGAATACTTCGAAGCAGAAGGTTGATC
GAATAAGCTCACGCTTTGTTTTGATGCTCTTTAGGCCGCTGTACTTTTAC
GGTGGACAATAGTAAATAGGACCAAATATTGTTGGTAGAAATAGGGAAAT
ATATACCTGGTAGGTTTTTGTGCGTACCGTAGGTCCTATTTACTATGGTC
CCCCGTAATAGAAGTAAGTCAAGTCAGTCACACAAGGGTTAACAAGCGTC
GTGGCGACCCTTAACAAGTACCAGGCAACTATTAATATTTATATCTATTA
TACTAACCGTCTTCCGCTGTCTGCTTGCAGGCTCACCCGGAGTTGAACTA
CGAGTACGGGAGGAGAGTGATGGACGGAATATTGGACGCGGACGTTAAGG
CTGGCCGACTCACGCACGAGAAAGCAAGGAGACTCAAAGAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8348:619..5062+

>mRNA_M-pyrifera_M_contig8348.19493.1 ID=mRNA_M-pyrifera_M_contig8348.19493.1|Name=mRNA_M-pyrifera_M_contig8348.19493.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig8348:619..5062+ (Macrocystis pyrifera P11B4 male)
GTTCGACGAAATAAGGAAGGTGGTGGAGGGGGGAGGGGGCGAGTCGGGGG
GCAAGGGGACCGGGGCCTGCCTCCGCGGATGCGACTCCTTTACCATCACA
ACGATGAGGTTCGACGAAATAAGGAAGGTGGTGGAGGGGGGAGGGGGCGA
GTCGGGGGGCAAGGGGACCGGGGCCTGCCTCCGCGGATGCGACTCCTTTA
CCATCACAACGATGAGGTTGTCAAACTCCCTCCTGGGGCCACGAACATTT
CGACGTCGCGTCACTGTCAGATCCACGGCATGATCATGGACACGGAGGGC
GAGGGCGAGGAGCCAAGGCCGAATATCTTGGCGTTTCAGGTTGTCAAACT
CCCTCCTGGGGCCACGAACATTTCGACGTCGCGTCACTGTCAGATCCACG
GCATGATCATGGACACGGAGGGCGAGGGCGAGGAGCCAAGGCCGAATATC
TTGGCGTTTCAGGCTCACCCGGAGTTGAACTACGAGTACGGGAGGAGAGT
GATGGACGGAATATTGGACGCGGACGTTAAGGCTGGCCGACTCACGCACG
AGAAAGCAAGGAGACTCAAAGAGCAGGCTCACCCGGAGTTGAACTACGAG
TACGGGAGGAGAGTGATGGACGGAATATTGGACGCGGACGTTAAGGCTGG
CCGACTCACGCACGAGAAAGCAAGGAGACTCAAAGAGCAG
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