mRNA_M-pyrifera_M_contig83035.19399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83035.19399.1
Unique NamemRNA_M-pyrifera_M_contig83035.19399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: A0A7S3U8W0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3U8W0_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 4.230e-17
Identity = 66/178 (37.08%), Postives = 87/178 (48.88%), Query Frame = 1
Query:   43 LGRTSDDVRSLMACVDKIKDADVVIVDDGSPVEIKG----MNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVKTMVKALRKEKGAIVAGLTFAVRDTTIGTFHNRMGTLNPRVLSDGKDILYAPTCNMGFSLATAKKFHPTLKLFDESFPTAAFEDVHFSI 564
            L RT + V  L+ C  +  D   V+VDDGSP+ I       N  ++R   N GPAAARN G  +   L      +   D+D      W K  +K ++  K  I  GLT +   T +   H  +GTL   +L DG  +LYAPTCN+  S A    F       DE+F +AAFEDV F I
Sbjct:  158 LRRTVESV--LVQCTHEQLD---VVVDDGSPIAINMNLDLSNFAVIRKSRNAGPAAARNTGAQYA--LERGAKTICFLDSDASADKEWFKEHLK-MQAAKPGIYGGLTTSSSATLVSRLHECIGTLRGPLLPDGS-LLYAPTCNLSVSSACWVSF-------DETFKSAAFEDVEFCI 319          
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: A0A813D4L3_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D4L3_POLGL)

HSP 1 Score: 67.8 bits (164), Expect = 6.860e-10
Identity = 57/203 (28.08%), Postives = 88/203 (43.35%), Query Frame = 1
Query:    4 GCGKQNAV-LIIPCLGRTSDDVRSLMACVDKIKDADV-----VIVDDGSPVEI--------KGMNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLC--DADCVCTDAWVKTMVKALRKEKGAIVAGLTFAVRDTTIGTFHNRMGTLNPRVLSDGKD--ILYAPTCNMGFSLATAKKFHPTLKLFDESFPTAAFEDVHF 558
            G G   A+ +++P    T + +  L A +  +++  V     V+VDDGSP+++        +     ++R   N GPA AR+ GL  + +       V++C  D+D      W K M++A     G I +G T +   +  G FH+  G LN R   D     +LY  TCN    L            FD  F    FED+ F
Sbjct:  189 GLGSSPALAVVLPVFAATPEHIAELRATLQALQNQSVRPDVVVVVDDGSPIDLSPALSAWEQSDRLAMVRMASNTGPAGARSVGLRLL-RHWAEGCRVVVCLTDSDAAPDVDWCKAMLQAQLSNPG-IASGPTLSATRSRTGAFHDHFGNLNGRWSWDDPKGVLLYGCTCNFSLDLDAVGDAE-----FDPVFSRPGFEDIEF 384          
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: UPI0016726B6D (mycofactocin biosynthesis glycosyltransferase MftF n=1 Tax=Streptomyces umbrinus TaxID=67370 RepID=UPI0016726B6D)

HSP 1 Score: 62.0 bits (149), Expect = 5.980e-8
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 1
Query:   10 GKQNAVLIIPCLGRTSDDVRSLMACVDKIKDADVVIVDDGSP------VEIKGMNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVKTMVKALRKEKGAIVA 345
            G     +++P  GR ++    L  C+  ++   VV+VDDGSP      V  +   A ++R D+N GPAAARN GLA      TP   +   D+DC   D W+  +V +    K A VA
Sbjct:   87 GPHPVTVVVPAFGRPAE----LHRCLASLRGLPVVVVDDGSPDPGPVRVAAETHGARLVRHDVNRGPAAARNTGLALAG---TP--LIAFVDSDCRPEDGWLDVLVPSFDDPKVAAVA 195          
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: UPI00068E8891 (mycofactocin biosynthesis glycosyltransferase MftF n=2 Tax=Streptomyces TaxID=1883 RepID=UPI00068E8891)

HSP 1 Score: 62.0 bits (149), Expect = 6.020e-8
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   10 GKQNAVLIIPCLGRTSDDVRSLMACVDKIKDADVVIVDDGSP------VEIKGMNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVKTMVKALRKEKGAIVA 345
            G     +++P  GR ++    L  C+  ++   VV+VDDGSP      V  +   A ++R ++N GPAAARN GLA V    TP   V   D+DC   D W+  +V +    K A VA
Sbjct:  105 GPHPVTVVVPVFGRPTE----LHRCLGSLRGLPVVVVDDGSPDPGPVRVAAETHGARLVRHEVNRGPAAARNTGLALV---DTP--LVAFVDSDCRPDDGWLDVLVPSFDDPKVAAVA 213          
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: A0A117RB00_9ACTN (Glyco_trans_2-like domain-containing protein n=1 Tax=Streptomyces griseoruber TaxID=1943 RepID=A0A117RB00_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 2.710e-7
Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 1
Query:   10 GKQNAVLIIPCLGRTSDDVRSLMACVDKIKDADVVIVDDGSP------VEIKGMNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVKTMVKALRKEKGAIVA 345
            G     +++P  GR ++    L  C+  ++   VV+VDDGSP             A +LR ++N GPAAARN GLA V    TP   V   D+DC   + W+  +V      K A VA
Sbjct:   90 GPHPVTVVVPAFGRPAE----LHRCLASLRGLPVVVVDDGSPDPGPVRAAASAHGARVLRHEVNRGPAAARNTGLAVV---RTP--LVAFVDSDCRPEEGWLDLLVPCFDDPKVAAVA 198          
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: A0A7Y4RKC1_9BACT (Glycosyltransferase n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7Y4RKC1_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-5
Identity = 47/158 (29.75%), Postives = 72/158 (45.57%), Query Frame = 1
Query:  106 DVVIVDDGSPVEIKG--------MNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVKTMVKALRKEKGAIVAG-LTFAVRDTTIGTFHNRMGT-LNPRVLSDGKDILYAPTCNMGFSLATAKKFHPTLKLFDESFPTAAFED 549
            +VV+VDDGSPV ++G        ++A  L    N GPA ARNAG AF A+      H+   D DC+    W+  + + + +   A + G +  A+ D+   T    +   L     +  +   +  T N+ F     ++       FD SFP AA ED
Sbjct:   34 EVVVVDDGSPVPVRGAVAAWRDRLDARTLEQ-ANQGPATARNAG-AFAAR----GAHIAFTDDDCLPEPDWLSNLARHIARNPAAGIGGRIVNALPDSAYSTGSQLLVEYLYEYFNTSNEGATFFITSNLSFPTEAFREMGG----FDTSFPLAAAED 181          
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Match: UPI000C2C6B45 (mycofactocin biosynthesis glycosyltransferase MftF n=1 Tax=unclassified Microbacterium TaxID=2609290 RepID=UPI000C2C6B45)

HSP 1 Score: 52.8 bits (125), Expect = 8.570e-5
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   28 LIIPCLGRTSDDVRSLMACVDKIKDADVVIVDDGS--PVEIKGMNAT----ILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVKTMVKALRKEKGAIVA 345
            ++IP   R S   R L +  + +  A+VV+VDDGS  P ++ G+ AT    ++    NLGPAAARNAGLA V    TP   V   D+D V  ++ + T+++ L   + A+VA
Sbjct:   94 VVIPVRDRPSQLARLLASVPEGV--AEVVVVDDGSLHPPDVAGVAATHGARLVALPENLGPAAARNAGLAVV---QTP--FVAFVDSDVVLDESALDTLLRHLVDPEVALVA 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83035.19399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3U8W0_9CHLO4.230e-1737.08Hypothetical protein (Fragment) n=1 Tax=Picocystis... [more]
A0A813D4L3_POLGL6.860e-1028.08Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
UPI0016726B6D5.980e-834.75mycofactocin biosynthesis glycosyltransferase MftF... [more]
UPI00068E88916.020e-835.59mycofactocin biosynthesis glycosyltransferase MftF... [more]
A0A117RB00_9ACTN2.710e-734.75Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A7Y4RKC1_9BACT2.640e-529.75Glycosyltransferase n=1 Tax=Gemmatimonadales bacte... [more]
UPI000C2C6B458.570e-538.39mycofactocin biosynthesis glycosyltransferase MftF... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83035contigM-pyrifera_M_contig83035:336..899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
COG Functional cat.M
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Taxonomic scopeViridiplantae
Seed ortholog score100.5
Seed ortholog evalue8.7e-19
Seed eggNOG ortholog3218.PP1S37_48V6.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyltransferase like family 2
EggNOG OGs3816R@33090,KOG3736@1,KOG3736@2759
Exons1
Model size564
Cds size564
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.44319-CDS-M-pyrifera_M_contig83035:335..8991622816737.44319-CDS-M-pyrifera_M_contig83035:335..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83035 336..899 +
1692278148.8382576-CDS-M-pyrifera_M_contig83035:335..8991692278148.8382576-CDS-M-pyrifera_M_contig83035:335..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83035 336..899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83035.19399.1prot_M-pyrifera_M_contig83035.19399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83035 336..899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83035.19399.1

>prot_M-pyrifera_M_contig83035.19399.1 ID=prot_M-pyrifera_M_contig83035.19399.1|Name=mRNA_M-pyrifera_M_contig83035.19399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
MGCGKQNAVLIIPCLGRTSDDVRSLMACVDKIKDADVVIVDDGSPVEIKG
MNATILRSDINLGPAAARNAGLAFVAKLHTPPTHVLLCDADCVCTDAWVK
TMVKALRKEKGAIVAGLTFAVRDTTIGTFHNRMGTLNPRVLSDGKDILYA
PTCNMGFSLATAKKFHPTLKLFDESFPTAAFEDVHFSI
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mRNA from alignment at M-pyrifera_M_contig83035:336..899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83035.19399.1 ID=mRNA_M-pyrifera_M_contig83035.19399.1|Name=mRNA_M-pyrifera_M_contig83035.19399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig83035:336..899+ (Macrocystis pyrifera P11B4 male)
ATGGGGTGTGGAAAGCAGAATGCAGTGCTTATTATTCCATGCTTGGGAAG GACAAGCGACGATGTACGCTCTCTCATGGCTTGTGTTGACAAAATCAAAG ATGCAGATGTTGTCATTGTTGATGATGGTTCTCCCGTAGAGATCAAAGGG ATGAATGCTACGATCCTCCGCTCTGATATCAACCTTGGTCCCGCAGCTGC AAGAAATGCTGGACTTGCCTTTGTTGCAAAGCTCCATACACCACCAACAC ACGTTCTTCTTTGCGATGCGGATTGTGTCTGTACTGATGCTTGGGTGAAG ACGATGGTGAAAGCATTGAGGAAGGAGAAAGGTGCTATTGTTGCTGGATT GACATTTGCTGTTCGTGACACTACGATTGGTACGTTTCACAACCGAATGG GGACATTGAATCCAAGAGTATTAAGCGATGGAAAAGATATCCTCTACGCC CCGACTTGCAACATGGGGTTTTCTCTTGCAACTGCGAAGAAATTCCACCC AACACTCAAGCTCTTTGACGAGTCCTTTCCCACAGCAGCGTTTGAAGATG TCCATTTTTCCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83035:336..899+

>mRNA_M-pyrifera_M_contig83035.19399.1 ID=mRNA_M-pyrifera_M_contig83035.19399.1|Name=mRNA_M-pyrifera_M_contig83035.19399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig83035:336..899+ (Macrocystis pyrifera P11B4 male)
ATGGGGTGTGGAAAGCAGAATGCAGTGCTTATTATTCCATGCTTGGGAAG
GACAAGCGACGATGTACGCTCTCTCATGGCTTGTGTTGACAAAATCAAAG
ATGCAGATGTTGTCATTGTTGATGATGGTTCTCCCGTAGAGATCAAAGGG
ATGAATGCTACGATCCTCCGCTCTGATATCAACCTTGGTCCCGCAGCTGC
AAGAAATGCTGGACTTGCCTTTGTTGCAAAGCTCCATACACCACCAACAC
ACGTTCTTCTTTGCGATGCGGATTGTGTCTGTACTGATGCTTGGGTGAAG
ACGATGGTGAAAGCATTGAGGAAGGAGAAAGGTGCTATTGTTGCTGGATT
GACATTTGCTGTTCGTGACACTACGATTGGTACGTTTCACAACCGAATGG
GGACATTGAATCCAAGAGTATTAAGCGATGGAAAAGATATCCTCTACGCC
CCGACTTGCAACATGGGGTTTTCTCTTGCAACTGCGAAGAAATTCCACCC
AACACTCAAGCTCTTTGACGAGTCCTTTCCCACAGCAGCGTTTGAAGATG
TCCATTTTTCCATTATGGGGTGTGGAAAGCAGAATGCAGTGCTTATTATT
CCATGCTTGGGAAGGACAAGCGACGATGTACGCTCTCTCATGGCTTGTGT
TGACAAAATCAAAGATGCAGATGTTGTCATTGTTGATGATGGTTCTCCCG
TAGAGATCAAAGGGATGAATGCTACGATCCTCCGCTCTGATATCAACCTT
GGTCCCGCAGCTGCAAGAAATGCTGGACTTGCCTTTGTTGCAAAGCTCCA
TACACCACCAACACACGTTCTTCTTTGCGATGCGGATTGTGTCTGTACTG
ATGCTTGGGTGAAGACGATGGTGAAAGCATTGAGGAAGGAGAAAGGTGCT
ATTGTTGCTGGATTGACATTTGCTGTTCGTGACACTACGATTGGTACGTT
TCACAACCGAATGGGGACATTGAATCCAAGAGTATTAAGCGATGGAAAAG
ATATCCTCTACGCCCCGACTTGCAACATGGGGTTTTCTCTTGCAACTGCG
AAGAAATTCCACCCAACACTCAAGCTCTTTGACGAGTCCTTTCCCACAGC
AGCGTTTGAAGATGTCCATTTTTCCATT
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