mRNA_M-pyrifera_M_contig82711.19333.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82711.19333.1
Unique NamemRNA_M-pyrifera_M_contig82711.19333.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: UPI0018E1F811 (uncharacterized protein LOC119773968 n=1 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E1F811)

HSP 1 Score: 71.6 bits (174), Expect = 1.830e-11
Identity = 53/172 (30.81%), Postives = 94/172 (54.65%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKAT--DNELRIPGYHCVSSCVENGTHGARGVALLVRDSLQARS-VELDSPWSVFVRCWDEPE----QPWVVGSVYLPRGKDTTSTP--VARVVQQLRKAQATNPGIPIVVMGDWNRTEIEVESLLREVDKRARGK 507
            L V  LN+NG+RNK  ++R ++ +  + +LAL ET+L A+  D+++ IPG+       +  ++G  GVAL V+D ++A+   +L +P    +  W E E    +P ++G  Y+P  +DT         + + L+K +  N    I VMGD+N  + + +SLL  + ++   K
Sbjct:   38 LSVALLNINGLRNKTEDIRHIISRDKVHVLALSETKLDASVADSKVYIPGFRMWRK--DRDSYGG-GVALYVQDHIEAKERTDLMNPEVEII--WVEMEIPDSRPVLLGCCYIPNNEDTKYLVKLYESITKMLKKKEEKN----IFVMGDFN-IDFKKDSLLSYIAEKVSSK 199          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: UPI001016037F (uncharacterized protein LOC114158158 n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=UPI001016037F)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-7
Identity = 52/173 (30.06%), Postives = 79/173 (45.66%), Query Frame = 1
Query:    1 TPKPAW---------LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKAT--DNELRIPGYHCV---SSCVENGTHGARGVALLVRDSLQAR------SVELDSPWSVFVRCWDEPE----QPWVVGSVYLPRGKDTTSTPVARVVQQLRKAQATNPGIPIVVMGDWN 447
            TP PA          L V  LN+NG+RNK  E+R ++ +  + ++AL E RL +T  ++++ IPG+           N T G  GVAL V+D ++ R        E D         W E E    +P ++G  Y+P+   TT     R    L   +  +  I   +MGD+N
Sbjct:   14 TPSPASQEENSEDEKLSVALLNINGLRNKTHEIRHIIARDKLHVVALCEIRLNSTVKESDVYIPGFRMWRRDKKDKRNNTGG--GVALYVQDHIKTRLRPDLMKAEADEENPKAEIIWVEMELPDSRPVLLGCCYIPKKNQTTYLKHIRETMTLMSKEKEDKDI--FLMGDFN 182          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: UPI00165C5E45 (uncharacterized protein LOC110369265 isoform X1 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165C5E45)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-6
Identity = 48/157 (30.57%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    1 TPKP-AWLGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRL--KATDNELRIPGYHCVSSCVENGTHGARGVALLVRDSLQA--RSVELDSPWSVFVRCWDE---PEQPWVVGSVYLPRGKDTTSTPVARVVQQLRKAQATNPGIPIVVMGDWN 447
            +P+P     +  LN+NG+RNK  E+R ++EK  + +LAL ET++  K  D+E+ I G+       ++ T+   GVAL V+D ++   RS  +++   +    W E   PE+  +VGS Y P   D     +   +    K +       I +MGD N
Sbjct:    5 SPEPNEKCSMALLNINGLRNKTDEIRYIIEKHKLHVLALCETKIDSKVKDSEVYIKGFRMWR---KDRTNYGGGVALYVQDHIETTLRSDLMETEAEII---WVEMKLPERSVLVGSCYRPPNDDLGLIEIYHTMTLASKEKIKRG---IFLMGDLN 152          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: UPI000443ED81 (uncharacterized protein LOC103132617 n=2 Tax=Poecilia TaxID=8080 RepID=UPI000443ED81)

HSP 1 Score: 54.7 bits (130), Expect = 1.420e-5
Identity = 44/150 (29.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKAT--DNELRIPGYHCVSSCVENGTHGARGVALLVRDSLQAR-SVELDSPWSVFVRCWDE---PEQPWVVGSVYLP-RGKDTTSTPVARVVQQLRKAQATNPGIPIVVMGDWN 447
            L +  LN+ G+R+K  EVR ++ +  + ++AL ET+L     ++E+ IPG+   S    +G     GVAL V+D ++ R    L +P +  +  W E   P +P ++G  Y P + K T    + + +Q L + +       I +MG++N
Sbjct:   17 LSLALLNIMGLRDKTHEVRHIIARDKLHVVALCETKLNTDVKESEVYIPGF---SMWRTDGDSSGGGVALYVQDHIKTRLRPNLMNPEAEII--WVEMELPARPVLLGCCYRPAKDKTTYLKHITKTIQLLSEKEKDKD---IFLMGNFN 158          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: A0A7V9L757_9DELT (Exodeoxyribonuclease III n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9L757_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 2.160e-5
Identity = 45/161 (27.95%), Postives = 75/161 (46.58%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRL---KATDNELRIPGYHCVSSCVENGTHGARGVALLVRDSLQARSVE-LDSPWSVFVRCWDEPEQPWVVGSVYLPRGKDTTSTPVARVVQQ-LRKAQATNPGIPIVVMGDWN--RTEIEVESLLR 480
            + +GT NVNG+R +  EV   +++  + ++ LQET+    +   + + + GYHC      +G  G  GVAL++R      +   +  P+ +  R         V+GSVY P G       +    Q  L  A+       +V++GD+N  R  I+V   LR
Sbjct:    1 MKLGTWNVNGIRKRSAEVLSWIDREELDVVCLQETKAALGQVPQHIVDVAGYHCHW----HGHAGYSGVALMLRQKHFGDAPNWVKPPFDMETRIVVAEVGNMVIGSVYGPNGGKDYGAKIEFWKQLVLWAAELREADKHLVLLGDFNIARLAIDVHPALR 157          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: A0A3B5PYD0_XIPMA (Uncharacterized protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5PYD0_XIPMA)

HSP 1 Score: 53.5 bits (127), Expect = 3.690e-5
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKAT--DNELRIPGYHCVS-SCVENGTHGARGVALLVRDSLQAR 249
            L +  LN+NG+RNK  E+R ++ +  + ++AL ETRL +T  ++++ IPG+        +N  +   GVAL V+D ++ R
Sbjct:   29 LSLALLNINGLRNKTHEIRHIIARDKLHVVALCETRLNSTVKESDVYIPGFSMWRRDMYDNSDNKGGGVALYVQDHIKTR 108          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: A0A3N0DZ22_9ACTN (Exodeoxyribonuclease III n=1 Tax=Marmoricola solisilvae TaxID=1542737 RepID=A0A3N0DZ22_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 4.100e-5
Identity = 43/156 (27.56%), Postives = 75/156 (48.08%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKATDNELRIPGYHCVSSCVEN-GTHGARGVALLVRDSLQARSVELDSPWSVFVRCWDEPEQPWVVG---------SVYLPRGKDTTSTPVARVVQ---QLRKAQATNPGIPIVVMGDWN 447
            + + T NVN +R++   V   +E+ +I +LA+QET  KA +++L + G       V   G +   GVA++ R  L+  SV  D+     +  W+E  +   +G         S+Y+P G+       A  ++    LR A A+     + ++GDWN
Sbjct:    1 MRIATWNVNSIRSRIDRVEAFLERHDIDVLAVQET--KAREDQLPLMGLQARGYDVAAAGYNQWNGVAIISRVGLEDVSVGFDA-----MPAWEEVAEARAIGATCGGVRIWSLYVPNGRKIDDPHYAYKLEWLKHLRDAAASWTDQQVALVGDWN 149          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: UPI000405F0FF (exodeoxyribonuclease III n=1 Tax=Nocardioides halotolerans TaxID=433660 RepID=UPI000405F0FF)

HSP 1 Score: 52.0 bits (123), Expect = 7.690e-5
Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKATDNELRIPGYHCVSSCVE-NGTHGARGVALLVRDSLQARSVELDSPWSVFVRCWDEP--EQPWVVG---------SVYLPRGKDTTSTPVARVVQ---QLRKAQATNPGIPIVVMGDWN 447
            + + T NVN +R++   V RL+E+ ++ +LALQET  KA +++L + G   +   V  +GT+   GVA+L R  L+   VE+  P +     W EP   +   VG         S+Y+P G+          +    +LR+A     G    +MGDWN
Sbjct:    1 MRLATWNVNSLRSRIDRVERLLERHDLDVLALQET--KAREDQLPLMGLQAMGYEVAYSGTNQWNGVAILSRVGLE--DVEVGFPGTPG---WGEPVETESRAVGATCGGVRVWSLYVPNGRKVDDPHYFYKLDWLARLREAARDWLGGQTCLMGDWN 151          
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Match: UPI001CDC6FE4 (uncharacterized protein LOC122825623 n=1 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDC6FE4)

HSP 1 Score: 52.4 bits (124), Expect = 8.990e-5
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   19 LGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKAT--DNELRIPGYHCVSSCVENGTHGARGVALLVRDSLQAR 249
            L +G LN+NG+RNK  EV+ ++ +  + ++AL ET+L     ++++ IPG+             A G+AL ++D ++ R
Sbjct:   29 LSLGLLNINGLRNKTHEVKHIIARDKLHVVALCETKLNINVEESKVHIPGFSMWRKDGPTNQRAAGGIALYIQDHIKTR 107          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82711.19333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI0018E1F8111.830e-1130.81uncharacterized protein LOC119773968 n=1 Tax=Cypri... [more]
UPI001016037F1.990e-730.06uncharacterized protein LOC114158158 n=1 Tax=Xipho... [more]
UPI00165C5E451.690e-630.57uncharacterized protein LOC110369265 isoform X1 n=... [more]
UPI000443ED811.420e-529.33uncharacterized protein LOC103132617 n=2 Tax=Poeci... [more]
A0A7V9L757_9DELT2.160e-527.95Exodeoxyribonuclease III n=1 Tax=Deltaproteobacter... [more]
A0A3B5PYD0_XIPMA3.690e-535.00Uncharacterized protein n=1 Tax=Xiphophorus macula... [more]
A0A3N0DZ22_9ACTN4.100e-527.56Exodeoxyribonuclease III n=1 Tax=Marmoricola solis... [more]
UPI000405F0FF7.690e-531.01exodeoxyribonuclease III n=1 Tax=Nocardioides halo... [more]
UPI001CDC6FE48.990e-531.65uncharacterized protein LOC122825623 n=1 Tax=Gambu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82711contigM-pyrifera_M_contig82711:241..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.141101-CDS-M-pyrifera_M_contig82711:240..7531622816734.141101-CDS-M-pyrifera_M_contig82711:240..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82711 241..753 -
1692278146.9409213-CDS-M-pyrifera_M_contig82711:240..7531692278146.9409213-CDS-M-pyrifera_M_contig82711:240..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82711 241..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82711.19333.1prot_M-pyrifera_M_contig82711.19333.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82711 241..753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82711.19333.1

>prot_M-pyrifera_M_contig82711.19333.1 ID=prot_M-pyrifera_M_contig82711.19333.1|Name=mRNA_M-pyrifera_M_contig82711.19333.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
TPKPAWLGVGTLNVNGVRNKGTEVRRLVEKSNIGILALQETRLKATDNEL
RIPGYHCVSSCVENGTHGARGVALLVRDSLQARSVELDSPWSVFVRCWDE
PEQPWVVGSVYLPRGKDTTSTPVARVVQQLRKAQATNPGIPIVVMGDWNR
TEIEVESLLREVDKRARGKE*
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mRNA from alignment at M-pyrifera_M_contig82711:241..753-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82711.19333.1 ID=mRNA_M-pyrifera_M_contig82711.19333.1|Name=mRNA_M-pyrifera_M_contig82711.19333.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig82711:241..753- (Macrocystis pyrifera P11B4 male)
ACACCAAAACCAGCATGGTTGGGGGTGGGAACATTGAACGTGAATGGAGT GAGGAATAAGGGAACGGAGGTCAGGAGGCTAGTCGAGAAGAGCAACATCG GAATACTCGCACTGCAAGAGACGCGGCTGAAGGCGACCGACAATGAGCTG CGAATACCTGGCTACCACTGTGTCTCGAGTTGCGTCGAGAACGGAACCCA CGGGGCCAGAGGGGTCGCCTTACTCGTACGTGACTCGTTGCAGGCGAGGA GCGTAGAGCTCGATTCACCCTGGAGTGTGTTCGTAAGGTGCTGGGATGAA CCGGAGCAGCCATGGGTGGTGGGAAGCGTATACTTACCGAGAGGTAAGGA CACGACATCGACGCCGGTGGCGAGAGTGGTGCAGCAACTGAGGAAGGCTC AAGCAACAAACCCTGGGATCCCAATAGTGGTGATGGGGGATTGGAATCGC ACGGAGATAGAGGTGGAGAGTCTACTGAGGGAGGTAGACAAGAGGGCCAG GGGGAAAGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82711:241..753-

>mRNA_M-pyrifera_M_contig82711.19333.1 ID=mRNA_M-pyrifera_M_contig82711.19333.1|Name=mRNA_M-pyrifera_M_contig82711.19333.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig82711:241..753- (Macrocystis pyrifera P11B4 male)
ACACCAAAACCAGCATGGTTGGGGGTGGGAACATTGAACGTGAATGGAGT
GAGGAATAAGGGAACGGAGGTCAGGAGGCTAGTCGAGAAGAGCAACATCG
GAATACTCGCACTGCAAGAGACGCGGCTGAAGGCGACCGACAATGAGCTG
CGAATACCTGGCTACCACTGTGTCTCGAGTTGCGTCGAGAACGGAACCCA
CGGGGCCAGAGGGGTCGCCTTACTCGTACGTGACTCGTTGCAGGCGAGGA
GCGTAGAGCTCGATTCACCCTGGAGTGTGTTCGTAAGGTGCTGGGATGAA
CCGGAGCAGCCATGGGTGGTGGGAAGCGTATACTTACCGAGAGGTAAGGA
CACGACATCGACGCCGGTGGCGAGAGTGGTGCAGCAACTGAGGAAGGCTC
AAGCAACAAACCCTGGGATCCCAATAGTGGTGATGGGGGATTGGAATCGC
ACGGAGATAGAGGTGGAGAGTCTACTGAGGGAGGTAGACAAGAGGGCCAG
GGGGAAAGAGTGAACACCAAAACCAGCATGGTTGGGGGTGGGAACATTGA
ACGTGAATGGAGTGAGGAATAAGGGAACGGAGGTCAGGAGGCTAGTCGAG
AAGAGCAACATCGGAATACTCGCACTGCAAGAGACGCGGCTGAAGGCGAC
CGACAATGAGCTGCGAATACCTGGCTACCACTGTGTCTCGAGTTGCGTCG
AGAACGGAACCCACGGGGCCAGAGGGGTCGCCTTACTCGTACGTGACTCG
TTGCAGGCGAGGAGCGTAGAGCTCGATTCACCCTGGAGTGTGTTCGTAAG
GTGCTGGGATGAACCGGAGCAGCCATGGGTGGTGGGAAGCGTATACTTAC
CGAGAGGTAAGGACACGACATCGACGCCGGTGGCGAGAGTGGTGCAGCAA
CTGAGGAAGGCTCAAGCAACAAACCCTGGGATCCCAATAGTGGTGATGGG
GGATTGGAATCGCACGGAGATAGAGGTGGAGAGTCTACTGAGGGAGGTAG
ACAAGAGGGCCAGGGGGAAAGAGTGA
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