mRNA_M-pyrifera_M_contig82572.19299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82572.19299.1
Unique NamemRNA_M-pyrifera_M_contig82572.19299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82572.19299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82572contigM-pyrifera_M_contig82572:39..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size870
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.4350033-CDS-M-pyrifera_M_contig82572:38..9081622816732.4350033-CDS-M-pyrifera_M_contig82572:38..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82572 39..908 -
1692278145.9842048-CDS-M-pyrifera_M_contig82572:38..9081692278145.9842048-CDS-M-pyrifera_M_contig82572:38..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82572 39..908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82572.19299.1prot_M-pyrifera_M_contig82572.19299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82572 39..908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82572.19299.1

>prot_M-pyrifera_M_contig82572.19299.1 ID=prot_M-pyrifera_M_contig82572.19299.1|Name=mRNA_M-pyrifera_M_contig82572.19299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=290bp
KVELGNKAKDIPRNAQYAFTGLCRLCPLFVNRHVPQKFVDWATKVEELGC
STVRWLLAFQLEAALPIFIDQCYGISSQRQRCSMFIGSILDQFVPFNIHE
DAPCKGLPEDTLQYQRHHLMQREEANWLPLNEASLQFSKIANEHAGKLIF
LLCLNTTNPQAELRARVFAALARLVPFSFGRDQAIPGSERSSKILAELEL
IKPLFRSALVEEYREAARVIARITANYRRYTNDVFAEAFSRMFQVSSQCS
KHWALEMLLPWCKNVDLNPSADEKHKLKQEPDEFLDLFFK
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mRNA from alignment at M-pyrifera_M_contig82572:39..908-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82572.19299.1 ID=mRNA_M-pyrifera_M_contig82572.19299.1|Name=mRNA_M-pyrifera_M_contig82572.19299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig82572:39..908- (Macrocystis pyrifera P11B4 male)
AAGGTTGAGTTGGGGAACAAGGCAAAGGACATCCCTCGCAACGCACAGTA
TGCGTTCACGGGTCTGTGTCGCCTCTGTCCCTTGTTCGTGAACCGCCACG
TGCCCCAGAAGTTCGTGGATTGGGCCACGAAGGTGGAGGAGCTGGGCTGC
AGCACCGTGCGATGGCTTCTTGCATTTCAACTGGAGGCTGCGCTGCCGAT
CTTCATTGATCAGTGCTACGGCATCTCCTCCCAGAGGCAGAGGTGCTCGA
TGTTCATTGGCTCCATCCTGGACCAATTCGTGCCCTTCAACATCCACGAA
GATGCTCCGTGCAAGGGACTGCCAGAGGACACCCTCCAGTACCAGAGACA
CCACCTCATGCAGCGAGAGGAGGCCAACTGGCTGCCTCTCAACGAAGCTA
GTCTGCAGTTCTCGAAGATCGCCAACGAGCACGCCGGCAAGCTCATCTTT
TTGTTGTGTCTCAACACCACAAACCCCCAGGCAGAGCTCAGGGCACGAGT
CTTCGCCGCTCTCGCTCGCCTGGTCCCCTTCAGCTTCGGCCGCGACCAAG
CCATTCCCGGCAGTGAGCGGTCTTCCAAGATTTTGGCAGAGCTGGAGTTG
ATCAAGCCCCTGTTCAGGTCGGCCCTCGTGGAGGAGTATCGAGAGGCCGC
GCGAGTGATTGCCCGTATTACGGCCAACTACCGACGCTACACAAACGACG
TGTTCGCTGAGGCGTTCTCGAGGATGTTCCAAGTCTCCTCGCAGTGCTCC
AAGCACTGGGCACTGGAGATGCTGCTGCCTTGGTGCAAGAACGTCGACTT
GAACCCCTCTGCAGACGAGAAGCACAAGCTCAAGCAAGAGCCGGACGAGT
TCCTCGACCTGTTCTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82572:39..908-

>mRNA_M-pyrifera_M_contig82572.19299.1 ID=mRNA_M-pyrifera_M_contig82572.19299.1|Name=mRNA_M-pyrifera_M_contig82572.19299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1740bp|location=Sequence derived from alignment at M-pyrifera_M_contig82572:39..908- (Macrocystis pyrifera P11B4 male)
AAGGTTGAGTTGGGGAACAAGGCAAAGGACATCCCTCGCAACGCACAGTA
TGCGTTCACGGGTCTGTGTCGCCTCTGTCCCTTGTTCGTGAACCGCCACG
TGCCCCAGAAGTTCGTGGATTGGGCCACGAAGGTGGAGGAGCTGGGCTGC
AGCACCGTGCGATGGCTTCTTGCATTTCAACTGGAGGCTGCGCTGCCGAT
CTTCATTGATCAGTGCTACGGCATCTCCTCCCAGAGGCAGAGGTGCTCGA
TGTTCATTGGCTCCATCCTGGACCAATTCGTGCCCTTCAACATCCACGAA
GATGCTCCGTGCAAGGGACTGCCAGAGGACACCCTCCAGTACCAGAGACA
CCACCTCATGCAGCGAGAGGAGGCCAACTGGCTGCCTCTCAACGAAGCTA
GTCTGCAGTTCTCGAAGATCGCCAACGAGCACGCCGGCAAGCTCATCTTT
TTGTTGTGTCTCAACACCACAAACCCCCAGGCAGAGCTCAGGGCACGAGT
CTTCGCCGCTCTCGCTCGCCTGGTCCCCTTCAGCTTCGGCCGCGACCAAG
CCATTCCCGGCAGTGAGCGGTCTTCCAAGATTTTGGCAGAGCTGGAGTTG
ATCAAGCCCCTGTTCAGGTCGGCCCTCGTGGAGGAGTATCGAGAGGCCGC
GCGAGTGATTGCCCGTATTACGGCCAACTACCGACGCTACACAAACGACG
TGTTCGCTGAGGCGTTCTCGAGGATGTTCCAAGTCTCCTCGCAGTGCTCC
AAGCACTGGGCACTGGAGATGCTGCTGCCTTGGTGCAAGAACGTCGACTT
GAACCCCTCTGCAGACGAGAAGCACAAGCTCAAGCAAGAGCCGGACGAGT
TCCTCGACCTGTTCTTCAAGAAGGTTGAGTTGGGGAACAAGGCAAAGGAC
ATCCCTCGCAACGCACAGTATGCGTTCACGGGTCTGTGTCGCCTCTGTCC
CTTGTTCGTGAACCGCCACGTGCCCCAGAAGTTCGTGGATTGGGCCACGA
AGGTGGAGGAGCTGGGCTGCAGCACCGTGCGATGGCTTCTTGCATTTCAA
CTGGAGGCTGCGCTGCCGATCTTCATTGATCAGTGCTACGGCATCTCCTC
CCAGAGGCAGAGGTGCTCGATGTTCATTGGCTCCATCCTGGACCAATTCG
TGCCCTTCAACATCCACGAAGATGCTCCGTGCAAGGGACTGCCAGAGGAC
ACCCTCCAGTACCAGAGACACCACCTCATGCAGCGAGAGGAGGCCAACTG
GCTGCCTCTCAACGAAGCTAGTCTGCAGTTCTCGAAGATCGCCAACGAGC
ACGCCGGCAAGCTCATCTTTTTGTTGTGTCTCAACACCACAAACCCCCAG
GCAGAGCTCAGGGCACGAGTCTTCGCCGCTCTCGCTCGCCTGGTCCCCTT
CAGCTTCGGCCGCGACCAAGCCATTCCCGGCAGTGAGCGGTCTTCCAAGA
TTTTGGCAGAGCTGGAGTTGATCAAGCCCCTGTTCAGGTCGGCCCTCGTG
GAGGAGTATCGAGAGGCCGCGCGAGTGATTGCCCGTATTACGGCCAACTA
CCGACGCTACACAAACGACGTGTTCGCTGAGGCGTTCTCGAGGATGTTCC
AAGTCTCCTCGCAGTGCTCCAAGCACTGGGCACTGGAGATGCTGCTGCCT
TGGTGCAAGAACGTCGACTTGAACCCCTCTGCAGACGAGAAGCACAAGCT
CAAGCAAGAGCCGGACGAGTTCCTCGACCTGTTCTTCAAG
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