mRNA_M-pyrifera_M_contig82185.19219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82185.19219.1
Unique NamemRNA_M-pyrifera_M_contig82185.19219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: A0A2E0RLW6_9ACTN (AraC family transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RLW6_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 2.480e-27
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F EDL QT T F+R+RRLER RADLAD+V GSG TVTEIASRW FNHLGRF+  Y++RFGESPS+TLR
Sbjct:  289 FSEDLSQTVTGFVRSRRLERARADLADSVPGSGVTVTEIASRWQFNHLGRFAVTYRERFGESPSETLR 356          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: UPI00112E9692 (AraC family transcriptional regulator n=1 Tax=Nocardioides humi TaxID=449461 RepID=UPI00112E9692)

HSP 1 Score: 99.8 bits (247), Expect = 1.920e-23
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F +DL+ TP  ++R+RRLER R  LADA+   G TVTE+A RWGFNHLG FS+ Y++RFGESPSQTLR
Sbjct:  283 FADDLRTTPMNYVRDRRLERARNQLADALPSDGITVTEVAERWGFNHLGNFSAAYRKRFGESPSQTLR 350          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: A0A0Q8DNK7_9ACTN (AraC family transcriptional regulator n=3 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8DNK7_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 2.020e-22
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F +DL  TP  ++R+RRLER R  LADA+   G TVT++A RWGFNHLG FS+ Y++RFGESPSQTLR
Sbjct:  285 FHDDLHTTPMNYVRDRRLERARNQLADALPRDGVTVTDVAERWGFNHLGNFSAAYRKRFGESPSQTLR 352          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: UPI001C0D3D9B (helix-turn-helix transcriptional regulator n=1 Tax=Subtercola sp. PAMC28395 TaxID=2846775 RepID=UPI001C0D3D9B)

HSP 1 Score: 95.9 bits (237), Expect = 5.400e-22
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F E L  TPTAFIR RRLE+V  DL +A+   G TVT  A RWGFNHLG FS +Y++RFGESPSQTLR
Sbjct:  283 FKESLGTTPTAFIRERRLEKVHGDLLEALPSDGVTVTASAERWGFNHLGEFSVLYRKRFGESPSQTLR 350          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: A0A511D542_9PSEU (Transcriptional regulator n=1 Tax=Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 TaxID=1123024 RepID=A0A511D542_9PSEU)

HSP 1 Score: 95.5 bits (236), Expect = 7.520e-22
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F E+L  TPT ++R+RRLER RADL DA    G TVT+IA RWGF+HLG F+++Y++R+GESPS+TLR
Sbjct:  284 FREELGTTPTVYLRDRRLERARADLTDAEPSDGVTVTDIAERWGFSHLGSFAALYRKRWGESPSETLR 351          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: R7XS19_9ACTN (AraC family transcriptional regulator n=3 Tax=Nocardioides TaxID=1839 RepID=R7XS19_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 5.870e-21
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F EDL  TP  FIR+RRL+ VR DL  A+   G TVT++A RWGFNHLG FS +Y+ RFGESPS TLR
Sbjct:  257 FREDLGTTPITFIRDRRLDAVRRDLLSAMPREGITVTDVAVRWGFNHLGSFSGIYRNRFGESPSATLR 324          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: K6XH27_9MICO (Putative AraC family transcriptional regulator n=2 Tax=Kineosphaera TaxID=211469 RepID=K6XH27_9MICO)

HSP 1 Score: 93.2 bits (230), Expect = 6.030e-21
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F EDL  TP  +IR+RRL+RVRA+L  A+ G G TVT IA +WGF HLG F+++Y++RFGE PSQTLR
Sbjct:  293 FREDLGTTPVGYIRDRRLDRVRAELMQALPGDGVTVTAIAEQWGFGHLGGFAALYKRRFGEPPSQTLR 360          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: A0A1Q4E9X7_9PSEU (AraC family transcriptional regulator n=1 Tax=Pseudonocardia sp. 73-21 TaxID=1895809 RepID=A0A1Q4E9X7_9PSEU)

HSP 1 Score: 92.8 bits (229), Expect = 7.640e-21
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F ++L  +P  ++R+RRLER R DL DAV   G TVTEIA RWGFNHLG F+ +Y++R+GESPS+TLR
Sbjct:  284 FHDELGTSPMLYLRDRRLERARGDLTDAVPSDGVTVTEIAQRWGFNHLGSFAVLYRKRWGESPSETLR 351          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: UPI0016032483 (helix-turn-helix transcriptional regulator n=1 Tax=Microbispora sp. H10670 TaxID=2729108 RepID=UPI0016032483)

HSP 1 Score: 87.0 bits (214), Expect = 7.920e-21
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F   L++TPT+F+R  RL+RV A+LA A     ATVT++A RWGF HLGRFSSVY+QRFGESPS+TL+
Sbjct:   28 FRRHLEKTPTSFLREVRLDRVHAELA-ARNPYTATVTDVAYRWGFAHLGRFSSVYRQRFGESPSETLQ 94          
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Match: A0A1A2WV13_9MYCO (AraC family transcriptional regulator n=2 Tax=unclassified Mycobacterium TaxID=2642494 RepID=A0A1A2WV13_9MYCO)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-20
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGRFSSVYQQRFGESPSQTLR 204
            F E+L  +P  ++R+RRLERV A+LADA+ G G TVT++A+RWGFNHLG F+  Y++R+G SPS+TLR
Sbjct:  283 FREELGMSPMTYVRDRRLERVHAELADAMPGDGVTVTDVATRWGFNHLGSFAVEYRKRWGMSPSETLR 350          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82185.19219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0RLW6_9ACTN2.480e-2775.00AraC family transcriptional regulator n=1 Tax=Acid... [more]
UPI00112E96921.920e-2364.71AraC family transcriptional regulator n=1 Tax=Noca... [more]
A0A0Q8DNK7_9ACTN2.020e-2263.24AraC family transcriptional regulator n=3 Tax=uncl... [more]
UPI001C0D3D9B5.400e-2266.18helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A511D542_9PSEU7.520e-2261.76Transcriptional regulator n=1 Tax=Pseudonocardia a... [more]
R7XS19_9ACTN5.870e-2163.24AraC family transcriptional regulator n=3 Tax=Noca... [more]
K6XH27_9MICO6.030e-2161.76Putative AraC family transcriptional regulator n=2... [more]
A0A1Q4E9X7_9PSEU7.640e-2160.29AraC family transcriptional regulator n=1 Tax=Pseu... [more]
UPI00160324837.920e-2163.24helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A1A2WV13_9MYCO1.050e-2058.82AraC family transcriptional regulator n=2 Tax=uncl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82185contigM-pyrifera_M_contig82185:706..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.2
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog935866.JAER01000029_gene1429
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transcriptional regulator
EggNOG OGs2IBP1@201174,COG2207@1,COG2207@2
COG Functional cat.K
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.76566-CDS-M-pyrifera_M_contig82185:705..9151622816728.76566-CDS-M-pyrifera_M_contig82185:705..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82185 706..915 -
1692278144.1593688-CDS-M-pyrifera_M_contig82185:705..9151692278144.1593688-CDS-M-pyrifera_M_contig82185:705..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82185 706..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82185.19219.1prot_M-pyrifera_M_contig82185.19219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82185 706..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82185.19219.1

>prot_M-pyrifera_M_contig82185.19219.1 ID=prot_M-pyrifera_M_contig82185.19219.1|Name=mRNA_M-pyrifera_M_contig82185.19219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
FGEDLQQTPTAFIRNRRLERVRADLADAVGGSGATVTEIASRWGFNHLGR
FSSVYQQRFGESPSQTLRS*
back to top

mRNA from alignment at M-pyrifera_M_contig82185:706..915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82185.19219.1 ID=mRNA_M-pyrifera_M_contig82185.19219.1|Name=mRNA_M-pyrifera_M_contig82185.19219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig82185:706..915- (Macrocystis pyrifera P11B4 male)
TTCGGTGAAGATCTCCAACAGACCCCGACGGCCTTCATTCGAAACCGTCG TCTCGAGCGCGTTCGGGCCGACCTCGCCGATGCGGTCGGCGGCTCCGGTG CGACCGTGACCGAGATCGCCTCTCGCTGGGGCTTCAATCACCTGGGCCGA TTCTCCTCGGTCTATCAGCAACGCTTCGGCGAGTCTCCATCACAGACCCT GCGCAGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82185:706..915-

>mRNA_M-pyrifera_M_contig82185.19219.1 ID=mRNA_M-pyrifera_M_contig82185.19219.1|Name=mRNA_M-pyrifera_M_contig82185.19219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig82185:706..915- (Macrocystis pyrifera P11B4 male)
TTCGGTGAAGATCTCCAACAGACCCCGACGGCCTTCATTCGAAACCGTCG
TCTCGAGCGCGTTCGGGCCGACCTCGCCGATGCGGTCGGCGGCTCCGGTG
CGACCGTGACCGAGATCGCCTCTCGCTGGGGCTTCAATCACCTGGGCCGA
TTCTCCTCGGTCTATCAGCAACGCTTCGGCGAGTCTCCATCACAGACCCT
GCGCAGCTGATTCGGTGAAGATCTCCAACAGACCCCGACGGCCTTCATTC
GAAACCGTCGTCTCGAGCGCGTTCGGGCCGACCTCGCCGATGCGGTCGGC
GGCTCCGGTGCGACCGTGACCGAGATCGCCTCTCGCTGGGGCTTCAATCA
CCTGGGCCGATTCTCCTCGGTCTATCAGCAACGCTTCGGCGAGTCTCCAT
CACAGACCCTGCGCAGCTGA
back to top