mRNA_M-pyrifera_M_contig8213.19208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8213.19208.1
Unique NamemRNA_M-pyrifera_M_contig8213.19208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8213.19208.1 vs. uniprot
Match: A0A6H5JC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC44_9PHAE)

HSP 1 Score: 719 bits (1856), Expect = 4.200e-240
Identity = 518/1112 (46.58%), Postives = 624/1112 (56.12%), Query Frame = 1 
Query:    1 DAVERGDSSAVQLRMLSEVARIALSSNGGXXXXARATP-KSRSRALALDCLRLGLA-HLPDGKCSKEVEASGVLDIAAAGAQDERCNVRVAAVGVAREALRKAGA-ETLMNLLSSTQGGWLPALLVDGFPEVEQAARTALRHVSSC---QGDGVDDENDGDDDRRGDDHEDGPRLSSGEVEPPTSSSFSSAGP--SIVAVACAA-----MRSACRVLRETA---AASRKDEGLVVDSRVTDLAAEATARTALRALRGGVSLLGSPASLRSS-----------------------EREVAVVRVEALEAIEAWLASMLTG-PPMSLAWGT--GINHGASRLAD--APLGDLSAETRDAVRALLLAATNG--GVRIAALGAAEEAVEGFRAECCRSVSGASKEQREENEEGDEEFWRNAYAGLLVRLEVFAA----------------PAEEGAAIDRSEGN--------AELSPEGRLTGKQRPSSQQHLAPTPPESTRGDTDQASDEQRSALTRLAGKVAEALDEVPPAHEQVLSPHMDDDDKLSVRDKKALRVLGDRRRRWMVSSTHVLLRAAARFCEGDDFSTSATLDRGAK--------ERGVETAT--RLLVASMAFGQAASRSDDPAEAWLSCVRLEPLNCITRPTPPPXXXXXXXXXXXXXXXTELATPVPWELCVRGQALPRHDLPAPWASSPITVKLAEELVEASWSALSLSD-----SSPAAERSAEMLVQVLRAAARGRG-WREGAGVGVKHAISAAIRRLRFPLVAGATLGHALPLVLPLADDYDPAHQALGLSLLLRVGLEATPTELAWHRGLLLEVLERGLRGGGRDPSASLLCLAAAVRILR----NASGDDAGAGGAGVRIAREALAQAGRTSDGVVRVVMVCGAAALLELPATGKGYAPCELLRPALLCLLPILQ-----------------------------SSPVSASLDARAAALRALNALCLSCWPRVHAHASKLLCALLWTCGDCSRRAS------------------PRKSPPSSTEDTA--------SVDETVHAHATRIGALVLLLAGGP---------ARSTLREMCAAVSALRPEGSAMEQLADG 2874
            DA  +G ++  QL  L  +AR+ L+ +G     A  TP K+RSRALALDCL LGL  HL   +   +      L +AA GA+DER  VRVAA   A E LR+ GA E L++LLSS QG WLPALL DG+PEV+ AAR AL    +C    GDG+               E+G   ++G +    S++ +  G   S  A A AA     MR AC  LR  A   +A   + G V D R  DLA E T RTALRALRGG SLLGSP   R S                       ++E    RVEALE++EA L + L   P +S+ W    G  HGA+  A   A +G LS E  + VRAL L  T G  G R  AL AA  AVE FR+EC   +S      RE   EG E  W+  Y GLLVRLE  +A                PA EG  ++R +G+        A+    G   G      +   AP            A     S+L RLA  +AEAL+EVP A+EQ + P++D +D +++ +K ALR  G RRRRWM +STH+LLRA A  CE    S+                 E  + + T  +LLVA++ F QAA+ +DDP EAWLSC+R           P                 +EL  P+PWE CV G+ALPRH L APWAS   TV+LA+ LV+ +WSAL L       S P A  +AE L++ LRAA R RG WRE AGVG+KHA SAAIRRLRFPL +GA LGHALPL LPLADDYDPAHQA+G SLLLR+  EA P EL WHRGLLLEVLERG+R GGRDPSAS LC+ AAVR+LR    N          AG+RIARE LAQA R +DG V+ VMVCGAAALLE+PATG+GYAPCE LRPALLCLLPILQ                             S PVS+ LDARAA+LRA+ ALCLSCWPRVHAHASKLLC+LLWTCGDC+RRAS                  P++  PS     A        S DE V  +ATR+GALVL+LAG           ARSTLRE+CAAVS LRP G+AME+LADG
Sbjct:   69 DAAGKGSATPYQLPALLNIARLVLTPSGAGGVRAGTTPPKARSRALALDCLSLGLVLHLALSEEDMKYFRREALAVAAVGAKDERWEVRVAAARTAGEVLRRTGAQEKLIHLLSSEQGCWLPALLADGYPEVQHAARAALTQSLACLDGSGDGM--------------PENGLNPAAGSLSSSPSAAAAPVGATSSFPATAAAAXXXXXMRGACEALRAVALSNSAVEPEAGGVADLRAVDLAEEETTRTALRALRGGASLLGSPPGERESHSHLPPLASPSAPPGPREEEEGNKQEATAARVEALESVEALLVATLPEFPYLSVPWAAEGGDQHGAAASAGSAAGVGGLSLEAGETVRALSLGGTEGPAGFRAKALEAATAAVEEFRSEC---LSAGGDGGREAGGEGGEGLWKRVYCGLLVRLEACSAFMVGPEPPSRPTAVSLPAREGVVVERQDGHDTPAAAPPAQTPIAGEGAGGSSVGGESTTAPA-----------ARGSPPSSLARLAEGLAEALEEVPLAYEQAVPPNLDINDDMTISEKNALRSWGGRRRRWMAASTHLLLRAGANLCEQYRRSSCGXXXXXXXXXXXXXXXEEALASVTLVKLLVAALPFEQAATEADDPTEAWLSCMR----------PPEDTPGLDPAGATAPSAASELTAPIPWESCVHGRALPRHALSAPWASHANTVELAKRLVDVAWSALYLGGDDAGGSGPTA--AAETLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGWHRGLLLEVLERGIRCGGRDPSASALCMTAAVRLLRCSPKNGXXXXXXXERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEGYAPCEFLRPALLCLLPILQVRADAAAFYSSTRAHDPPSHHPIPTPSRKSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLLWTCGDCARRASVRTLSTSSSPGGGRANDRPKRPQPSLGVALAANAAAIDPSTDEAVRTYATRLGALVLVLAGDXXXXXXXXXAARSTLREICAAVSVLRPHGAAMERLADG 1140
[Close]
BLAST of mRNA_M-pyrifera_M_contig8213.19208.1 vs. uniprot
Match: D7FT98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT98_ECTSI)

HSP 1 Score: 697 bits (1798), Expect = 8.650e-232
Identity = 505/1070 (47.20%), Postives = 612/1070 (57.20%), Query Frame = 1 
Query:    1 DAVERGDSSAVQLRMLSEVARIALS-SNGGXXXXARATPKSRSRALALDCLRLGLA-HLP--DGKCSKEVEASGVLDIAAAGAQDERCNVRVAAVGVAREALRKAGA-ETLMNLLSSTQGGWLPALLVDGFPEVEQAARTALRHVSSCQGDGVDDENDGDDDRRGDDHEDGPRLSSGEVEPPTSSSFSSAGPSIVAVACA------AMRSACRVLRETAAAS---RKDEGLVVDSRVTDLAAEATARTALRALRGGVSLLGSPASLRSS-----------------------EREVAVVRVEALEAIEAWLASMLTG-PPMSLAWGT--GINHGASRLAD--APLGDLSAETRDAVRALLLAATNG--GVRIAALGAAEEAVEGFRAECCRSVSGASKEQREENEEGDEEFWRNAYAGLLVRLEVFAA----------------PAEEGAAIDRSEGN----AELSPEGRLTGKQRPSSQQHLAPTPPESTRGDTDQASDEQRSALTRLAGKVAEALDEVPPAHEQVLSPHMDDDDKLSVRDKKALRVLGDRRRRWMVSSTHVLLRAAARFCEGDDFSTSATLDRGAKERGVETATRLLVASMAFGQAASRSDDPAEAWLSCVRLEPLNCITRPTPPPXXXXXXXXXXXXXXXTELATPVPWELCVRGQALPRHDLPAPWASSPITVKLAEELVEASWSALSLSD-----SSPAAERSAEMLVQVLRAAARGRG-WREGAGVGVKHAISAAIRRLRFPLVAGATLGHALPLVLPLADDYDPAHQALGLSLLLRVGLEATPTELAWHRGLLLEVLERGLRGGGRDPSASLLCLAAAVRILRNASGDDAGAGG--------AGVRIAREALAQAGRTSDGVVRVVMVCGAAALLELPATGKGYAPCELLRPALLCLLPILQSSPVSASLDARAAALRALNALCLSCWPRVHAHASKLLCALLWTCGDCSRRASPRKSPPSS---------------------TEDTASVD----ETVHAHATRIGALVLLLAGGP---------ARSTLREMCAAVSALRPEGSAMEQLADG 2874
            +A  +G ++  QL  L ++AR+AL+ S  G        PK+RSRALALDCL LGL  HL   +G   K+      L +AA GA+DER  VRVAA   A E LR+ G  E L++LLSS QG WLPALL DG+PEV+ AAR AL    +C         DG  D      E+G  L+   V  P+S S ++A     +          AMR AC  LR  A ++     + G VVD R  DLA E T RTALRALRGG SLLGSP   R S                       E+E    RVEALE++EA L   L   P +S+ W    G  HGA+  A   A +G LS E  + V AL L    G  G R  AL AA  AVE FR+EC  + +G      E   +G E  W+  Y GLLVRLE  +A                PA EG  ++  +G+    A    +  + G+    S      T   + RG          S+L RL    AEAL+EVP A+EQ + P++D++D +++ +K ALR  G RRRRWMV+STH+LLRA A+ CE    S            G  +     +AS    +  +  DDP EAWLSC+R          +P                 +EL  P+PWE CV GQALPRH L APWAS   TV+LA+ LV+ +WSAL L       S P A  +AE L++ LRAA R RG WRE AGVG+KHA SAAIRRLRFPL +GA LGHALPL LPLADDYDPAHQA+G SLLLR+  EA P EL  HRGLLLEVLERG+R GGRDPSAS LC+AA VR+LR +                 AG+RIARE LAQA R +DG V+ VMVCGAAALLE+PATGKGYAPCE LRPALLCLLPILQS PVS+ LDARAA+LRA+ ALCLSCWPRVHAHASKLLC+LLWTCGDC+RRAS R+   SS                       + A++D    E V  +ATR+GALVL+LAG           ARSTLRE+CAAVS LRP G+AME+LADG
Sbjct:   79 NAAGKGSATPYQLPALLDIARLALTPSCAGGVRVGTTPPKARSRALALDCLSLGLVLHLEPSEGDRLKDFRREA-LAVAAVGAKDERWEVRVAAARAAGEVLRRTGGQEKLVHLLSSKQGCWLPALLADGYPEVQHAAREALTQSLACP--------DGSCDGM---PENG--LNPAAVSLPSSPSAAAAPVRAASXXXXXXXXXXAMRGACEALRAAALSNLDVEPEAGGVVDLRAVDLAEEETTRTALRALRGGASLLGSPPGERESHSHLPLLASSSALPGRREEEHGNEQEATAARVEALESVEALLVGTLPDFPDLSVPWAAEGGDQHGAAASARSAAGVGGLSLEAGETVCALSLGGAEGAAGFRAKALEAATAAVEEFRSECLSAAAGDGG--GETGGKGGEGLWKRVYCGLLVRLEGCSAFMVGPEPPSPPTAVSLPAREGVVVNGRDGHDTSAATPPTQALIAGEGAGGSTVGGESTTAPAARGSPP-------SSLARLTEAFAEALEEVPLAYEQAVPPNLDNNDDMTISEKNALRARGGRRRRWMVASTHLLLRAGAKLCEQYRRSCGGGAPAADVAGGSGSGGEQALASATLVKLLA--DDPNEAWLSCMR----------SPEDTPGLDPAGATAPSSASELTAPIPWESCVHGQALPRHYLSAPWASHATTVELAKRLVDIAWSALYLGGDDAGGSGPTA--AAETLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGLHRGLLLEVLERGIRCGGRDPSASALCMAAVVRLLRRSXXXXXXXXXXXXXXXERAGIRIARETLAQAARATDGAVKAVMVCGAAALLEVPATGKGYAPCEFLRPALLCLLPILQSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLLWTCGDCTRRASVRRLSSSSPGGGRAKDGPARPQPSLGVVLAANAAAIDPLTDEAVRTYATRLGALVLVLAGDXXXXXXXXXAARSTLREICAAVSVLRPHGAAMERLADG 1111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8213.19208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC44_9PHAE4.200e-24046.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT98_ECTSI8.650e-23247.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8213contigM-pyrifera_M_contig8213:499..5218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog164328.Phyra78900
Preferred nameTTI2
KEGG koko:K08155
KEGG TC2.A.1.2.11,2.A.1.2.12,2.A.1.2.29
KEGG Pathwayko04721,ko04726,ko04728,ko05012,ko05030,ko05031,ko05034,map04721,map04726,map04728,map05012,map05030,map05031,map05034
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0070013
EggNOG OGs2CNEB@1,2QVMM@2759,3Q9T9@4776
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-06_003590.1
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size2892
Cds size2892
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8213.19208.1prot_M-pyrifera_M_contig8213.19208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8213 499..5218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.2608094-CDS-M-pyrifera_M_contig8213:498..8671622816728.2608094-CDS-M-pyrifera_M_contig8213:498..867Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8213 499..867 -
1692278143.9288347-CDS-M-pyrifera_M_contig8213:498..8671692278143.9288347-CDS-M-pyrifera_M_contig8213:498..867Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8213 499..867 -
1622816728.271623-CDS-M-pyrifera_M_contig8213:2067..42481622816728.271623-CDS-M-pyrifera_M_contig8213:2067..4248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8213 2068..4248 -
1692278143.9419897-CDS-M-pyrifera_M_contig8213:2067..42481692278143.9419897-CDS-M-pyrifera_M_contig8213:2067..4248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8213 2068..4248 -
1622816728.2822902-CDS-M-pyrifera_M_contig8213:4876..52181622816728.2822902-CDS-M-pyrifera_M_contig8213:4876..5218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8213 4877..5218 -
1692278143.9526591-CDS-M-pyrifera_M_contig8213:4876..52181692278143.9526591-CDS-M-pyrifera_M_contig8213:4876..5218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8213 4877..5218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8213.19208.1

>prot_M-pyrifera_M_contig8213.19208.1 ID=prot_M-pyrifera_M_contig8213.19208.1|Name=mRNA_M-pyrifera_M_contig8213.19208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=964bp
DAVERGDSSAVQLRMLSEVARIALSSNGGGGGEARATPKSRSRALALDCL
RLGLAHLPDGKCSKEVEASGVLDIAAAGAQDERCNVRVAAVGVAREALRK
AGAETLMNLLSSTQGGWLPALLVDGFPEVEQAARTALRHVSSCQGDGVDD
ENDGDDDRRGDDHEDGPRLSSGEVEPPTSSSFSSAGPSIVAVACAAMRSA
CRVLRETAAASRKDEGLVVDSRVTDLAAEATARTALRALRGGVSLLGSPA
SLRSSEREVAVVRVEALEAIEAWLASMLTGPPMSLAWGTGINHGASRLAD
APLGDLSAETRDAVRALLLAATNGGVRIAALGAAEEAVEGFRAECCRSVS
GASKEQREENEEGDEEFWRNAYAGLLVRLEVFAAPAEEGAAIDRSEGNAE
LSPEGRLTGKQRPSSQQHLAPTPPESTRGDTDQASDEQRSALTRLAGKVA
EALDEVPPAHEQVLSPHMDDDDKLSVRDKKALRVLGDRRRRWMVSSTHVL
LRAAARFCEGDDFSTSATLDRGAKERGVETATRLLVASMAFGQAASRSDD
PAEAWLSCVRLEPLNCITRPTPPPSPTTVPAAIAAAAAATELATPVPWEL
CVRGQALPRHDLPAPWASSPITVKLAEELVEASWSALSLSDSSPAAERSA
EMLVQVLRAAARGRGWREGAGVGVKHAISAAIRRLRFPLVAGATLGHALP
LVLPLADDYDPAHQALGLSLLLRVGLEATPTELAWHRGLLLEVLERGLRG
GGRDPSASLLCLAAAVRILRNASGDDAGAGGAGVRIAREALAQAGRTSDG
VVRVVMVCGAAALLELPATGKGYAPCELLRPALLCLLPILQSSPVSASLD
ARAAALRALNALCLSCWPRVHAHASKLLCALLWTCGDCSRRASPRKSPPS
STEDTASVDETVHAHATRIGALVLLLAGGPARSTLREMCAAVSALRPEGS
AMEQLADGVVEGQ*
back to top

mRNA from alignment at M-pyrifera_M_contig8213:499..5218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8213.19208.1 ID=mRNA_M-pyrifera_M_contig8213.19208.1|Name=mRNA_M-pyrifera_M_contig8213.19208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4720bp|location=Sequence derived from alignment at M-pyrifera_M_contig8213:499..5218- (Macrocystis pyrifera P11B4 male)
GACGCTGTAGAGCGCGGCGACAGTAGTGCCGTTCAGCTGCGGATGCTCTC
AGAGGTCGCCCGCATCGCGCTGTCAAGCAATGGCGGCGGTGGCGGTGAGG
CTCGAGCCACCCCTAAATCGCGATCCCGCGCCTTGGCCCTCGATTGCCTG
AGACTCGGCCTGGCGCATCTCCCCGACGGAAAGTGTTCGAAAGAGGTTGA
GGCTAGTGGCGTCCTAGATATCGCGGCGGCTGGGGCGCAGGACGAGAGGT
GCAACGTGAGGGTCGCGGCGGTGGGAGTTGCGCGAGAAGCGTTAAGGAAG
GCGGGGGCTGAGACGCTTATGAATCTGCTGTCGTCGACGCAGGTGATTGG
TCTTTTGTCTTTTGTGGAGGTGTCATTTTGGTGGTATGGCTGGACTGGAC
TATTAATAGACTGCCGGGTTTCATGCCGTGCAAGTTGGCTTCATGTCGCA
AGAACTGATCGCATCGTTTTTTATTTTTATTTTTATTTTTGGTTTCTTGA
ACGTAGACAGTTAAGGTTTCGGTCGATCATGCAGGAGAATATTTGCGTTT
TGTGCGTGCGCACACGAACTTTGTGTCATCGTTCCGTTTGTTACTGTCGT
GTCGTCGTTCAGTTTGACTGCCGGGACTTTGAAGCACCCCCCCTCGCGCC
GTGGGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGC
CTGCGCACACTAGTCAAGTTTCGTGTGCACATTTGGCATGTATCCGCCTG
CCGTGTCTCCCTTCGTGAAAGTCTCGTTCATGGTGTACATATCTCTGCGA
CCTTCGGCACGCGAATAACTTACGTAGACACCCCATTCCTGCTTTTGAAA
AGTATATTATCCTGCCAGGTACTCAACACCAGCTTTTCCGCACCCCCCGC
TTCCCCCCCTTTCTCTCTCCCTCCGGGTTTGCTGCACCTTGGTGGTCTAT
GAAAAACACGCACGACGTAGGGAGGTTGGTTGCCTGCCCTGCTAGTCGAC
GGCTTCCCCGAAGTCGAGCAGGCAGCGCGCACTGCCCTCAGGCACGTTTC
TAGTTGTCAAGGCGATGGCGTCGATGACGAAAACGACGGCGACGACGACC
GTCGCGGCGACGACCACGAAGACGGTCCCCGCCTGTCTTCGGGCGAGGTC
GAGCCCCCGACTTCGTCCTCTTTCTCCTCCGCAGGTCCCTCAATCGTCGC
CGTTGCTTGTGCGGCGATGCGTAGCGCGTGCCGCGTTCTGCGCGAGACGG
CGGCGGCCTCTCGCAAAGACGAAGGCCTCGTCGTCGACTCGAGAGTTACC
GATCTCGCGGCGGAGGCGACAGCGCGGACAGCTCTTCGGGCGCTGCGCGG
AGGCGTTTCGCTGTTGGGATCGCCAGCCTCCCTCCGTTCCTCAGAGCGAG
AAGTGGCGGTGGTTCGGGTGGAGGCCCTCGAGGCGATCGAAGCGTGGTTG
GCGAGCATGTTGACGGGTCCGCCGATGTCGTTAGCGTGGGGTACGGGGAT
AAATCACGGAGCATCGAGGTTGGCGGACGCCCCACTGGGCGATCTTTCCG
CGGAAACCCGCGATGCGGTTCGAGCTCTCCTGCTTGCAGCCACAAACGGC
GGGGTTCGAATCGCGGCGCTAGGGGCGGCGGAGGAAGCCGTGGAAGGGTT
CAGGGCGGAGTGCTGTAGGTCAGTGAGTGGCGCGAGCAAGGAGCAGCGAG
AGGAAAATGAGGAAGGGGACGAGGAGTTTTGGAGAAACGCTTACGCTGGG
TTGCTCGTAAGACTGGAGGTGTTCGCTGCTCCCGCGGAGGAGGGCGCAGC
CATTGACAGAAGCGAGGGGAACGCAGAGCTGTCGCCCGAGGGCCGGTTGA
CCGGAAAACAGCGACCAAGTTCGCAACAGCATCTAGCCCCCACCCCCCCC
GAGAGTACAAGAGGCGATACGGATCAAGCCAGTGATGAGCAGCGTTCCGC
TTTGACGCGTCTGGCGGGAAAGGTCGCAGAGGCGCTCGATGAGGTGCCGC
CCGCTCACGAGCAGGTGTTGTCTCCACACATGGACGACGACGACAAGCTG
TCCGTCCGCGATAAGAAGGCGTTGCGCGTCCTGGGGGATAGGCGACGGCG
CTGGATGGTGTCTTCGACCCACGTCCTCCTTCGAGCGGCTGCGCGTTTCT
GCGAAGGAGACGACTTCTCGACGAGCGCGACACTGGACCGCGGAGCAAAG
GAGCGAGGCGTGGAAACAGCGACGAGGCTGCTGGTGGCGTCAATGGCCTT
CGGACAAGCTGCGTCTAGATCAGACGACCCCGCCGAAGCCTGGCTGTCTT
GCGTGCGTCTCGAGCCTCTCAACTGCATAACGCGACCGACACCACCCCCG
TCGCCCACAACTGTCCCAGCCGCAATTGCTGCCGCTGCTGCAGCAACAGA
GCTCGCCACCCCGGTACCGTGGGAGCTGTGCGTGCGGGGACAAGCGTTGC
CGAGACACGACCTCCCCGCGCCGTGGGCGAGTAGCCCCATCACCGTCAAG
CTAGCGGAGGAGTTAGTTGAGGCTTCCTGGAGCGCACTCTCCTTGAGCGA
TAGCAGCCCGGCAGCCGAGCGGAGCGCGGAGATGCTGGTCCAAGTGCTTC
GCGCCGCCGCTCGCGGTCGAGGGTGGCGGGAGGGGGCAGGTGTGGGCGTC
AAGCACGCGATTTCTGCGGCCATCCGTCGGCTGCGGTTCCCCCTGGTCGC
CGGCGCGACTCTCGGGCACGCGTTGCCTCTAGTCTTGCCCCTCGCAGACG
ACTACGACCCTGCTCATCAGGCCTTGGGACTGTCGCTGCTGCTGCGCGTG
GGTCTCGAGGCTACCCCCACGGAGCTCGCGTGGCACCGTGGCCTGCTTCT
GGAGGTTCTTGAGAGAGGCCTCAGAGGCGGGGGTAGGGACCCCTCCGCGA
GCTTGTTGTGTCTCGCCGCCGCCGTCCGCATACTGCGAAACGCCTCCGGC
GACGACGCCGGCGCCGGCGGTGCCGGGGTTCGTATTGCGAGAGAGGCGTT
GGCGCAGGCAGGCAGAACGAGCGATGGGGTGGTAAGGGTCGTGATGGTGT
GTGGTGCGGCAGCTTTGCTGGAACTACCGGCCACGGGGAAAGGGTACGCG
CCCTGCGAGCTTCTGCGACCGGCACTTCTGTGCCTGCTGCCTATCCTCCA
GGTATTGTGTCGTGGCCTTTGGTGGACCGCTGCCGGGCTCTGTGCTACTT
TTAGTGTTTCCCCCCAACTTCAATAAGTGTTTAGAGCCTGAGCATATGGC
ATGATTCCGCGGACGGAGGCGGACATCGATCAATGATGTTTTCTCGGGGA
GGTGTCGCATTTTGTTTTTTTTCCTCTTTCCATTCATTTTCTTCGCCCCA
TATTTTCTCTCGCCCTCATACTTGTATCTCAGATCCGGGGCCACGTAGCG
GGTTCTCCCCCCCCCTCCCCGCTGCGTGCCTTCCTTTTGATGCGAGAAGA
CTTGAGCTATTTATTCCCCCGTCGATTCGCGTCGAATTTCGCGACGCCCT
CCTAGCCGCTGATTCCTTTTTTTCTTTTCGAAAATTTAGAAATTGTCTCC
ACGGTGGGATTTAAACTCACGGGATCAACTCTATTAATACCAGGATTCGA
GGGTACCCCTGAACCACCGGGGCGACCGGCCAATGCGCATGAATCCAGGT
TTCTATGTTCGTCTGGGATTTGGTAGTATTTTCTTCCTTACTGCATCGCT
TGAACAAAACACCGGGCGCGCACTCAGCACCCACATCATTGAAAAAAACG
TTCTCGCGTCTTCTTTTGTTTTAAACACTTGCAGAATTGATCCAACACTA
TTGTACGTAAACCCAAGTAGATGGTCGCCGCGTTGCATGCACGCTCAAGA
CGGTGGGTTTATCATCCTATTGGCGAGGCCCCGCTGCTTCCGGGCAGGAG
GCCTCATCCGATAATTTTTTTTTACATTTACATTGACCCTCTTGGAGACT
TTGGGAGCGGGGATTTGAACGTGAAAAGGTGACCATTACAGCAGCGGCCA
CTGCATGATTGGGGAATGGTACAATTTTGGTGTCCAAGGTGAAATGCCTA
GGGTGGCATGGCAGGAGCGCCAAAATGATCCTACCCGGGCTGCTGGGCGC
TCCCCCGCTGCTCGTAGAGGGTTGCTAACACCCAAGCTACCAACCATTGC
TTGTTGTAGTCGATATCTCGGGTTTAACTGTCCGGCGGCAGCGTAAAATA
ATACCTGATACTACAGTAAATACAAGTAGTTTATATCCCCAGAAACAGGG
CCGAGTGGTATCAAGATTAACCTTCGCTGTCCCTCTTGCCGGTCCTCCGC
CCCCCCCCTCCCCCACCCCCCTGCCCGCGCGTTGTTCGACCTCTCTCACA
GTCATCCCCGGTTTCTGCGAGCCTAGATGCCCGAGCGGCTGCGCTGAGGG
CCCTGAACGCCCTCTGCCTTTCCTGCTGGCCGCGAGTCCACGCCCACGCG
TCCAAACTGCTGTGCGCCTTGCTGTGGACTTGCGGCGACTGCTCTCGGCG
AGCCTCGCCTCGAAAATCGCCACCATCATCAACAGAGGATACGGCGTCCG
TCGACGAGACAGTACATGCGCATGCAACGAGGATCGGCGCGTTGGTGTTG
TTGTTGGCGGGAGGTCCAGCCCGTTCGACTTTGAGGGAGATGTGCGCCGC
CGTGTCCGCGTTGCGACCGGAAGGGTCCGCCATGGAACAGCTTGCGGATG
GGGTTGTAGAGGGGCAATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8213:499..5218-

>mRNA_M-pyrifera_M_contig8213.19208.1 ID=mRNA_M-pyrifera_M_contig8213.19208.1|Name=mRNA_M-pyrifera_M_contig8213.19208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5784bp|location=Sequence derived from alignment at M-pyrifera_M_contig8213:499..5218- (Macrocystis pyrifera P11B4 male)
GACGCTGTAGAGCGCGGCGACAGTAGTGCCGTTCAGCTGCGGATGCTCTC
AGAGGTCGCCCGCATCGCGCTGTCAAGCAATGGCGGCGGTGGCGGTGAGG
CTCGAGCCACCCCTAAATCGCGATCCCGCGCCTTGGCCCTCGATTGCCTG
AGACTCGGCCTGGCGCATCTCCCCGACGGAAAGTGTTCGAAAGAGGTTGA
GGCTAGTGGCGTCCTAGATATCGCGGCGGCTGGGGCGCAGGACGAGAGGT
GCAACGTGAGGGTCGCGGCGGTGGGAGTTGCGCGAGAAGCGTTAAGGAAG
GCGGGGGCTGAGACGCTTATGAATCTGCTGTCGTCGACGCAGGACGCTGT
AGAGCGCGGCGACAGTAGTGCCGTTCAGCTGCGGATGCTCTCAGAGGTCG
CCCGCATCGCGCTGTCAAGCAATGGCGGCGGTGGCGGTGAGGCTCGAGCC
ACCCCTAAATCGCGATCCCGCGCCTTGGCCCTCGATTGCCTGAGACTCGG
CCTGGCGCATCTCCCCGACGGAAAGTGTTCGAAAGAGGTTGAGGCTAGTG
GCGTCCTAGATATCGCGGCGGCTGGGGCGCAGGACGAGAGGTGCAACGTG
AGGGTCGCGGCGGTGGGAGTTGCGCGAGAAGCGTTAAGGAAGGCGGGGGC
TGAGACGCTTATGAATCTGCTGTCGTCGACGCAGGGAGGTTGGTTGCCTG
CCCTGCTAGTCGACGGCTTCCCCGAAGTCGAGCAGGCAGCGCGCACTGCC
CTCAGGCACGTTTCTAGTTGTCAAGGCGATGGCGTCGATGACGAAAACGA
CGGCGACGACGACCGTCGCGGCGACGACCACGAAGACGGTCCCCGCCTGT
CTTCGGGCGAGGTCGAGCCCCCGACTTCGTCCTCTTTCTCCTCCGCAGGT
CCCTCAATCGTCGCCGTTGCTTGTGCGGCGATGCGTAGCGCGTGCCGCGT
TCTGCGCGAGACGGCGGCGGCCTCTCGCAAAGACGAAGGCCTCGTCGTCG
ACTCGAGAGTTACCGATCTCGCGGCGGAGGCGACAGCGCGGACAGCTCTT
CGGGCGCTGCGCGGAGGCGTTTCGCTGTTGGGATCGCCAGCCTCCCTCCG
TTCCTCAGAGCGAGAAGTGGCGGTGGTTCGGGTGGAGGCCCTCGAGGCGA
TCGAAGCGTGGTTGGCGAGCATGTTGACGGGTCCGCCGATGTCGTTAGCG
TGGGGTACGGGGATAAATCACGGAGCATCGAGGTTGGCGGACGCCCCACT
GGGCGATCTTTCCGCGGAAACCCGCGATGCGGTTCGAGCTCTCCTGCTTG
CAGCCACAAACGGCGGGGTTCGAATCGCGGCGCTAGGGGCGGCGGAGGAA
GCCGTGGAAGGGTTCAGGGCGGAGTGCTGTAGGTCAGTGAGTGGCGCGAG
CAAGGAGCAGCGAGAGGAAAATGAGGAAGGGGACGAGGAGTTTTGGAGAA
ACGCTTACGCTGGGTTGCTCGTAAGACTGGAGGTGTTCGCTGCTCCCGCG
GAGGAGGGCGCAGCCATTGACAGAAGCGAGGGGAACGCAGAGCTGTCGCC
CGAGGGCCGGTTGACCGGAAAACAGCGACCAAGTTCGCAACAGCATCTAG
CCCCCACCCCCCCCGAGAGTACAAGAGGCGATACGGATCAAGCCAGTGAT
GAGCAGCGTTCCGCTTTGACGCGTCTGGCGGGAAAGGTCGCAGAGGCGCT
CGATGAGGTGCCGCCCGCTCACGAGCAGGTGTTGTCTCCACACATGGACG
ACGACGACAAGCTGTCCGTCCGCGATAAGAAGGCGTTGCGCGTCCTGGGG
GATAGGCGACGGCGCTGGATGGTGTCTTCGACCCACGTCCTCCTTCGAGC
GGCTGCGCGTTTCTGCGAAGGAGACGACTTCTCGACGAGCGCGACACTGG
ACCGCGGAGCAAAGGAGCGAGGCGTGGAAACAGCGACGAGGCTGCTGGTG
GCGTCAATGGCCTTCGGACAAGCTGCGTCTAGATCAGACGACCCCGCCGA
AGCCTGGCTGTCTTGCGTGCGTCTCGAGCCTCTCAACTGCATAACGCGAC
CGACACCACCCCCGTCGCCCACAACTGTCCCAGCCGCAATTGCTGCCGCT
GCTGCAGCAACAGAGCTCGCCACCCCGGTACCGTGGGAGCTGTGCGTGCG
GGGACAAGCGTTGCCGAGACACGACCTCCCCGCGCCGTGGGCGAGTAGCC
CCATCACCGTCAAGCTAGCGGAGGAGTTAGTTGAGGCTTCCTGGAGCGCA
CTCTCCTTGAGCGATAGCAGCCCGGCAGCCGAGCGGAGCGCGGAGATGCT
GGTCCAAGTGCTTCGCGCCGCCGCTCGCGGTCGAGGGTGGCGGGAGGGGG
CAGGTGTGGGCGTCAAGCACGCGATTTCTGCGGCCATCCGTCGGCTGCGG
TTCCCCCTGGTCGCCGGCGCGACTCTCGGGCACGCGTTGCCTCTAGTCTT
GCCCCTCGCAGACGACTACGACCCTGCTCATCAGGCCTTGGGACTGTCGC
TGCTGCTGCGCGTGGGTCTCGAGGCTACCCCCACGGAGCTCGCGTGGCAC
CGTGGCCTGCTTCTGGAGGTTCTTGAGAGAGGCCTCAGAGGCGGGGGTAG
GGACCCCTCCGCGAGCTTGTTGTGTCTCGCCGCCGCCGTCCGCATACTGC
GAAACGCCTCCGGCGACGACGCCGGCGCCGGCGGTGCCGGGGTTCGTATT
GCGAGAGAGGCGTTGGCGCAGGCAGGCAGAACGAGCGATGGGGTGGTAAG
GGTCGTGATGGTGTGTGGTGCGGCAGCTTTGCTGGAACTACCGGCCACGG
GGAAAGGGTACGCGCCCTGCGAGCTTCTGCGACCGGCACTTCTGTGCCTG
CTGCCTATCCTCCAGGGAGGTTGGTTGCCTGCCCTGCTAGTCGACGGCTT
CCCCGAAGTCGAGCAGGCAGCGCGCACTGCCCTCAGGCACGTTTCTAGTT
GTCAAGGCGATGGCGTCGATGACGAAAACGACGGCGACGACGACCGTCGC
GGCGACGACCACGAAGACGGTCCCCGCCTGTCTTCGGGCGAGGTCGAGCC
CCCGACTTCGTCCTCTTTCTCCTCCGCAGGTCCCTCAATCGTCGCCGTTG
CTTGTGCGGCGATGCGTAGCGCGTGCCGCGTTCTGCGCGAGACGGCGGCG
GCCTCTCGCAAAGACGAAGGCCTCGTCGTCGACTCGAGAGTTACCGATCT
CGCGGCGGAGGCGACAGCGCGGACAGCTCTTCGGGCGCTGCGCGGAGGCG
TTTCGCTGTTGGGATCGCCAGCCTCCCTCCGTTCCTCAGAGCGAGAAGTG
GCGGTGGTTCGGGTGGAGGCCCTCGAGGCGATCGAAGCGTGGTTGGCGAG
CATGTTGACGGGTCCGCCGATGTCGTTAGCGTGGGGTACGGGGATAAATC
ACGGAGCATCGAGGTTGGCGGACGCCCCACTGGGCGATCTTTCCGCGGAA
ACCCGCGATGCGGTTCGAGCTCTCCTGCTTGCAGCCACAAACGGCGGGGT
TCGAATCGCGGCGCTAGGGGCGGCGGAGGAAGCCGTGGAAGGGTTCAGGG
CGGAGTGCTGTAGGTCAGTGAGTGGCGCGAGCAAGGAGCAGCGAGAGGAA
AATGAGGAAGGGGACGAGGAGTTTTGGAGAAACGCTTACGCTGGGTTGCT
CGTAAGACTGGAGGTGTTCGCTGCTCCCGCGGAGGAGGGCGCAGCCATTG
ACAGAAGCGAGGGGAACGCAGAGCTGTCGCCCGAGGGCCGGTTGACCGGA
AAACAGCGACCAAGTTCGCAACAGCATCTAGCCCCCACCCCCCCCGAGAG
TACAAGAGGCGATACGGATCAAGCCAGTGATGAGCAGCGTTCCGCTTTGA
CGCGTCTGGCGGGAAAGGTCGCAGAGGCGCTCGATGAGGTGCCGCCCGCT
CACGAGCAGGTGTTGTCTCCACACATGGACGACGACGACAAGCTGTCCGT
CCGCGATAAGAAGGCGTTGCGCGTCCTGGGGGATAGGCGACGGCGCTGGA
TGGTGTCTTCGACCCACGTCCTCCTTCGAGCGGCTGCGCGTTTCTGCGAA
GGAGACGACTTCTCGACGAGCGCGACACTGGACCGCGGAGCAAAGGAGCG
AGGCGTGGAAACAGCGACGAGGCTGCTGGTGGCGTCAATGGCCTTCGGAC
AAGCTGCGTCTAGATCAGACGACCCCGCCGAAGCCTGGCTGTCTTGCGTG
CGTCTCGAGCCTCTCAACTGCATAACGCGACCGACACCACCCCCGTCGCC
CACAACTGTCCCAGCCGCAATTGCTGCCGCTGCTGCAGCAACAGAGCTCG
CCACCCCGGTACCGTGGGAGCTGTGCGTGCGGGGACAAGCGTTGCCGAGA
CACGACCTCCCCGCGCCGTGGGCGAGTAGCCCCATCACCGTCAAGCTAGC
GGAGGAGTTAGTTGAGGCTTCCTGGAGCGCACTCTCCTTGAGCGATAGCA
GCCCGGCAGCCGAGCGGAGCGCGGAGATGCTGGTCCAAGTGCTTCGCGCC
GCCGCTCGCGGTCGAGGGTGGCGGGAGGGGGCAGGTGTGGGCGTCAAGCA
CGCGATTTCTGCGGCCATCCGTCGGCTGCGGTTCCCCCTGGTCGCCGGCG
CGACTCTCGGGCACGCGTTGCCTCTAGTCTTGCCCCTCGCAGACGACTAC
GACCCTGCTCATCAGGCCTTGGGACTGTCGCTGCTGCTGCGCGTGGGTCT
CGAGGCTACCCCCACGGAGCTCGCGTGGCACCGTGGCCTGCTTCTGGAGG
TTCTTGAGAGAGGCCTCAGAGGCGGGGGTAGGGACCCCTCCGCGAGCTTG
TTGTGTCTCGCCGCCGCCGTCCGCATACTGCGAAACGCCTCCGGCGACGA
CGCCGGCGCCGGCGGTGCCGGGGTTCGTATTGCGAGAGAGGCGTTGGCGC
AGGCAGGCAGAACGAGCGATGGGGTGGTAAGGGTCGTGATGGTGTGTGGT
GCGGCAGCTTTGCTGGAACTACCGGCCACGGGGAAAGGGTACGCGCCCTG
CGAGCTTCTGCGACCGGCACTTCTGTGCCTGCTGCCTATCCTCCAGTCAT
CCCCGGTTTCTGCGAGCCTAGATGCCCGAGCGGCTGCGCTGAGGGCCCTG
AACGCCCTCTGCCTTTCCTGCTGGCCGCGAGTCCACGCCCACGCGTCCAA
ACTGCTGTGCGCCTTGCTGTGGACTTGCGGCGACTGCTCTCGGCGAGCCT
CGCCTCGAAAATCGCCACCATCATCAACAGAGGATACGGCGTCCGTCGAC
GAGACAGTACATGCGCATGCAACGAGGATCGGCGCGTTGGTGTTGTTGTT
GGCGGGAGGTCCAGCCCGTTCGACTTTGAGGGAGATGTGCGCCGCCGTGT
CCGCGTTGCGACCGGAAGGGTCCGCCATGGAACAGCTTGCGGATGGGGTT
GTAGAGGGGCAATGATCATCCCCGGTTTCTGCGAGCCTAGATGCCCGAGC
GGCTGCGCTGAGGGCCCTGAACGCCCTCTGCCTTTCCTGCTGGCCGCGAG
TCCACGCCCACGCGTCCAAACTGCTGTGCGCCTTGCTGTGGACTTGCGGC
GACTGCTCTCGGCGAGCCTCGCCTCGAAAATCGCCACCATCATCAACAGA
GGATACGGCGTCCGTCGACGAGACAGTACATGCGCATGCAACGAGGATCG
GCGCGTTGGTGTTGTTGTTGGCGGGAGGTCCAGCCCGTTCGACTTTGAGG
GAGATGTGCGCCGCCGTGTCCGCGTTGCGACCGGAAGGGTCCGCCATGGA
ACAGCTTGCGGATGGGGTTGTAGAGGGGCAATGA
back to top