mRNA_M-pyrifera_M_contig82035.19189.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82035.19189.1
Unique NamemRNA_M-pyrifera_M_contig82035.19189.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A6C0TZG6_9GAMM (RHS repeat-associated core domain-containing protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0TZG6_9GAMM)

HSP 1 Score: 113 bits (283), Expect = 2.000e-27
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            K+GYT   H DDVG+IHMNGR+Y PSLGR+LSPDPVTQAPENAQNYNRYSY FN PL Y DP G
Sbjct:   40 KRGYTGHEHLDDVGMIHMNGRVYSPSLGRMLSPDPVTQAPENAQNYNRYSYAFNNPLTYTDPSG 103          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A2E7C220_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C220_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 2.650e-27
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            ++GYT   H DDVGIIHMNGRLY PSLGR+LSPDPVTQAPENAQNYNRYSY FN PLKY DP G
Sbjct:  447 RRGYTGHEHLDDVGIIHMNGRLYSPSLGRMLSPDPVTQAPENAQNYNRYSYAFNNPLKYTDPTG 510          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A6C0TY55_9GAMM (RHS repeat-associated core domain-containing protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0TY55_9GAMM)

HSP 1 Score: 113 bits (283), Expect = 6.810e-27
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            K+GYT   H DDVGIIHMNGR+Y PSLGR+LSPDPVTQAPENAQNYNRYSY +N PL Y DP G
Sbjct:  226 KRGYTGHEHLDDVGIIHMNGRVYSPSLGRMLSPDPVTQAPENAQNYNRYSYAYNNPLTYTDPSG 289          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: UPI0004084DF6 (RHS repeat-associated core domain-containing protein n=1 Tax=Haliea salexigens TaxID=287487 RepID=UPI0004084DF6)

HSP 1 Score: 115 bits (288), Expect = 7.020e-27
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            K+GYT   H DDVGIIHMNGRLY PSLGR+LSPDPVTQAPENAQNYNRYSY FN PL++ DP G
Sbjct:  274 KRGYTGHEHLDDVGIIHMNGRLYSPSLGRMLSPDPVTQAPENAQNYNRYSYAFNNPLRFTDPSG 337          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A6C0U5P3_9GAMM (RHS repeat-associated core domain-containing protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U5P3_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 1.410e-26
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            K+GYT   H DDVG+IHMNGR+Y PSLGR+LSPDPVTQAPENAQNYNRYSY +N PL Y DP G
Sbjct:  262 KRGYTGHEHLDDVGMIHMNGRVYSPSLGRMLSPDPVTQAPENAQNYNRYSYAYNNPLTYTDPSG 325          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A3C7W3S5_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3C7W3S5_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 5.190e-26
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            ++GYT   H DD+G+IHMNGR+Y PSLGR+LSPDPVTQAP++AQNYNRY+Y+FN PLKY DP G
Sbjct:   72 QRGYTGHEHLDDIGVIHMNGRVYSPSLGRMLSPDPVTQAPDDAQNYNRYTYSFNNPLKYTDPSG 135          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A3L7DUT4_9GAMM (TcdB_toxin_midN domain-containing protein n=1 Tax=Seongchinamella sediminis TaxID=2283635 RepID=A0A3L7DUT4_9GAMM)

HSP 1 Score: 105 bits (261), Expect = 4.320e-23
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    4 QGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRGSSRRRVSLQVTSPTTSS 243
            +GYT   H DDVGIIHMNGR+Y PSLGR+L+PDPV   PEN +NYNRY+Y FN PLKY DP G  + +  +       SS
Sbjct: 1668 RGYTGHEHLDDVGIIHMNGRIYSPSLGRMLNPDPVVGEPENGRNYNRYTYVFNNPLKYTDPSGFDKSKSKIVCADSCVSS 1747          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: UPI001679AD1F (hypothetical protein n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI001679AD1F)

HSP 1 Score: 103 bits (258), Expect = 1.100e-22
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    4 QGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRG 192
            +GYT   H DDVGIIHMNGR+Y P+L R+LSPDPVTQA EN QNYNRY+Y +N PLKY DP G
Sbjct: 1740 RGYTGHEHLDDVGIIHMNGRVYSPTLARMLSPDPVTQALENGQNYNRYTYVYNNPLKYTDPSG 1802          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A5E6P1H5_9GAMM (Uncharacterized protein n=1 Tax=uncultured Gammaproteobacteria bacterium TaxID=86473 RepID=A0A5E6P1H5_9GAMM)

HSP 1 Score: 91.7 bits (226), Expect = 6.600e-21
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    4 QGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRGS 195
            +G+T   H D++G+IHMNGR+Y P +GR LS DP  Q+P N Q+YNRYSYT N PLKY DP G+
Sbjct:   23 RGFTGHEHIDEMGLIHMNGRVYDPQIGRFLSADPYIQSPYNTQSYNRYSYTINNPLKYTDPTGN 86          
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Match: A0A2S1JS72_9GAMM (Uncharacterized protein n=1 Tax=Microbulbifer sp. A4B17 TaxID=359370 RepID=A0A2S1JS72_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 7.370e-21
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 KQGYTDDNHRDDVGIIHMNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRGSSRRRVSLQVTSP 231
            K+GYT   H D  G+IHMNGR+Y P+LGR LSPDP+ QAP  +QN+NRYSY FN PL + DP G S +      T P
Sbjct:  319 KRGYTGHEHLDRTGLIHMNGRIYDPTLGRFLSPDPIVQAPTYSQNWNRYSYVFNNPLSFTDPSGFSAKDKKEDTTKP 395          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82035.19189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0TZG6_9GAMM2.000e-2778.13RHS repeat-associated core domain-containing prote... [more]
A0A2E7C220_9GAMM2.650e-2781.25Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1... [more]
A0A6C0TY55_9GAMM6.810e-2778.13RHS repeat-associated core domain-containing prote... [more]
UPI0004084DF67.020e-2779.69RHS repeat-associated core domain-containing prote... [more]
A0A6C0U5P3_9GAMM1.410e-2676.56RHS repeat-associated core domain-containing prote... [more]
A0A3C7W3S5_9GAMM5.190e-2671.88Uncharacterized protein (Fragment) n=1 Tax=Halieac... [more]
A0A3L7DUT4_9GAMM4.320e-2357.50TcdB_toxin_midN domain-containing protein n=1 Tax=... [more]
UPI001679AD1F1.100e-2271.43hypothetical protein n=1 Tax=Halioglobus pacificus... [more]
A0A5E6P1H5_9GAMM6.600e-2159.38Uncharacterized protein n=1 Tax=uncultured Gammapr... [more]
A0A2S1JS72_9GAMM7.370e-2155.84Uncharacterized protein n=1 Tax=Microbulbifer sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82035contigM-pyrifera_M_contig82035:411..913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.6
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog1121937.AUHJ01000001_gene294
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG3209 Rhs family protein
EggNOG OGs1MVV1@1224,1RMPT@1236,464DD@72275,COG3209@1,COG3209@2
COG Functional cat.M
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size503
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82035.19189.1prot_M-pyrifera_M_contig82035.19189.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82035 659..862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.3987873-UTR-M-pyrifera_M_contig82035:410..6581622816727.3987873-UTR-M-pyrifera_M_contig82035:410..658Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82035 411..658 -
1692278143.4439793-UTR-M-pyrifera_M_contig82035:410..6581692278143.4439793-UTR-M-pyrifera_M_contig82035:410..658Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82035 411..658 -
1622816727.425641-UTR-M-pyrifera_M_contig82035:862..9131622816727.425641-UTR-M-pyrifera_M_contig82035:862..913Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82035 863..913 -
1692278143.4650323-UTR-M-pyrifera_M_contig82035:862..9131692278143.4650323-UTR-M-pyrifera_M_contig82035:862..913Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82035 863..913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.4146016-CDS-M-pyrifera_M_contig82035:658..8621622816727.4146016-CDS-M-pyrifera_M_contig82035:658..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82035 659..862 -
1692278143.4553633-CDS-M-pyrifera_M_contig82035:658..8621692278143.4553633-CDS-M-pyrifera_M_contig82035:658..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82035 659..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82035.19189.1

>prot_M-pyrifera_M_contig82035.19189.1 ID=prot_M-pyrifera_M_contig82035.19189.1|Name=mRNA_M-pyrifera_M_contig82035.19189.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MNGRLYIPSLGRVLSPDPVTQAPENAQNYNRYSYTFNYPLKYIDPRGSSR
RRVSLQVTSPTTSSALF*
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mRNA from alignment at M-pyrifera_M_contig82035:411..913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82035.19189.1 ID=mRNA_M-pyrifera_M_contig82035.19189.1|Name=mRNA_M-pyrifera_M_contig82035.19189.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=503bp|location=Sequence derived from alignment at M-pyrifera_M_contig82035:411..913- (Macrocystis pyrifera P11B4 male)
AAGCAGGGCTATACAGACGATAATCACCGGGATGATGTGGGGATCATTCA CATGAACGGGCGGTTGTACATCCCGAGCCTTGGGCGGGTTTTGAGTCCTG ATCCGGTGACCCAGGCGCCCGAAAACGCCCAGAACTACAATCGTTATTCC TATACTTTTAACTATCCGTTGAAGTATATCGATCCTCGGGGTTCGTCGCG GAGACGGGTGTCGTTGCAGGTTACGTCGCCAACTACGTCCTCGGCTCTCT TCTGAGCGGTGCTTTAGGCAGCCTGTTTGGTGCCAGCAAGTGCGGTGCTA GTTGTCAGCGCTCCAGAGCGATGCGTGCTTCGTGCAACGGAACCAGCTGT CTGGCCCCTCGTGATCCGATAGAGAGACGGCTAGCTAACGAAGATCTTGC CTATGTCCGGCGTGTGGGTAACCTCCTATCTGTGGCTCAGGGTTGAATGA TCGCCCAGAGTAAGACAGCGGCGGGCGACGAGGTACATCCCGCTGGCAAT CCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82035:411..913-

>mRNA_M-pyrifera_M_contig82035.19189.1 ID=mRNA_M-pyrifera_M_contig82035.19189.1|Name=mRNA_M-pyrifera_M_contig82035.19189.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig82035:411..913- (Macrocystis pyrifera P11B4 male)
ATGAACGGGCGGTTGTACATCCCGAGCCTTGGGCGGGTTTTGAGTCCTGA
TCCGGTGACCCAGGCGCCCGAAAACGCCCAGAACTACAATCGTTATTCCT
ATACTTTTAACTATCCGTTGAAGTATATCGATCCTCGGGGTTCGTCGCGG
AGACGGGTGTCGTTGCAGGTTACGTCGCCAACTACGTCCTCGGCTCTCTT
CTGAATGAACGGGCGGTTGTACATCCCGAGCCTTGGGCGGGTTTTGAGTC
CTGATCCGGTGACCCAGGCGCCCGAAAACGCCCAGAACTACAATCGTTAT
TCCTATACTTTTAACTATCCGTTGAAGTATATCGATCCTCGGGGTTCGTC
GCGGAGACGGGTGTCGTTGCAGGTTACGTCGCCAACTACGTCCTCGGCTC
TCTTCTGA
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