mRNA_M-pyrifera_M_contig81928.19169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81928.19169.1
Unique NamemRNA_M-pyrifera_M_contig81928.19169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81928.19169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81928contigM-pyrifera_M_contig81928:141..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score80.5
Seed ortholog evalue6.4e-13
Seed eggNOG ortholog6669.EFX74855
KEGG koko:K05727
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0003674,GO:0005085,GO:0005088,GO:0005089,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007275,GO:0007399,GO:0007417,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0022008,GO:0030154,GO:0030182,GO:0031267,GO:0032501,GO:0032502,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0044424,GO:0044464,GO:0045466,GO:0046530,GO:0048513,GO:0048592,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050790,GO:0051020,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071944,GO:0090596,GO:0090630,GO:0098772
EggNOG free text desc.Guanyl-nucleotide exchange factor activity. It is involved in the biological process described with small GTPase mediated signal transduction
EggNOG OGs38BY5@33154,3B9R9@33208,3CSAM@33213,41YF5@6656,KOG1997@1,KOG1998@2759
COG Functional cat.T
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.5615551-CDS-M-pyrifera_M_contig81928:140..2561622816726.5615551-CDS-M-pyrifera_M_contig81928:140..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81928 141..256 +
1692278143.04431-CDS-M-pyrifera_M_contig81928:140..2561692278143.04431-CDS-M-pyrifera_M_contig81928:140..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81928 141..256 +
1622816726.5758026-CDS-M-pyrifera_M_contig81928:496..7671622816726.5758026-CDS-M-pyrifera_M_contig81928:496..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81928 497..767 +
1692278143.0603392-CDS-M-pyrifera_M_contig81928:496..7671692278143.0603392-CDS-M-pyrifera_M_contig81928:496..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81928 497..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81928.19169.1prot_M-pyrifera_M_contig81928.19169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81928 141..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81928.19169.1

>prot_M-pyrifera_M_contig81928.19169.1 ID=prot_M-pyrifera_M_contig81928.19169.1|Name=mRNA_M-pyrifera_M_contig81928.19169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
LYVRLLRGVFRQEGGKHTALSVEIRATVLDGEGRPIPVLLKGSRVGGSVE
LRSAVFFRANQPVPEELLILRFPAASAARFDGARLVLRFWHISTQGAVRS
RPVSFAFLPLTGPDGSALRDGMHELLCWE
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mRNA from alignment at M-pyrifera_M_contig81928:141..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81928.19169.1 ID=mRNA_M-pyrifera_M_contig81928.19169.1|Name=mRNA_M-pyrifera_M_contig81928.19169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig81928:141..767+ (Macrocystis pyrifera P11B4 male)
CTTTATGTCCGCTTGTTGCGAGGGGTGTTTCGACAAGAAGGTGGAAAGCA
CACGGCATTGAGTGTTGAGATTCGTGCAACTGTGCTTGATGGAGAAGGAC
GACCTATCCCTGTGTTGTCGAGAGCATGCAATGGTGTAGCACCTGCGGAT
GCGCATTTGTCTGGATCAGCCGATTTACGTCTTGTGGAAGCGGAAGAAGG
GGATCTTGTTGTACGTGGCGGGGAAGAAATTGCAGGAGCAGATGGAAGTG
ATGCAAAGACAAGGAGAGGTGGTAGTGGGGGGAGTAGTGGAAGTGGAGCT
GGAGAAGAAGAGAAAGGAGGAAAGTTTGGACCAGAAGCATATGGAGGAGC
AAGAAGATTGAAAGGAAGTCGAGTTGGAGGAAGTGTGGAATTGAGAAGTG
CTGTATTCTTTCGTGCAAATCAACCAGTCCCAGAGGAATTACTCATCTTG
CGTTTTCCTGCAGCAAGTGCAGCACGCTTTGATGGTGCGCGTTTGGTGCT
ACGGTTTTGGCATATTAGTACACAGGGTGCTGTGCGTTCAAGACCAGTAT
CATTTGCATTCCTTCCACTGACAGGACCTGATGGATCAGCGTTACGGGAT
GGAATGCACGAACTCTTATGTTGGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81928:141..767+

>mRNA_M-pyrifera_M_contig81928.19169.1 ID=mRNA_M-pyrifera_M_contig81928.19169.1|Name=mRNA_M-pyrifera_M_contig81928.19169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig81928:141..767+ (Macrocystis pyrifera P11B4 male)
CTTTATGTCCGCTTGTTGCGAGGGGTGTTTCGACAAGAAGGTGGAAAGCA
CACGGCATTGAGTGTTGAGATTCGTGCAACTGTGCTTGATGGAGAAGGAC
GACCTATCCCTGTGTTCTTTATGTCCGCTTGTTGCGAGGGGTGTTTCGAC
AAGAAGGTGGAAAGCACACGGCATTGAGTGTTGAGATTCGTGCAACTGTG
CTTGATGGAGAAGGACGACCTATCCCTGTGTTATTGAAAGGAAGTCGAGT
TGGAGGAAGTGTGGAATTGAGAAGTGCTGTATTCTTTCGTGCAAATCAAC
CAGTCCCAGAGGAATTACTCATCTTGCGTTTTCCTGCAGCAAGTGCAGCA
CGCTTTGATGGTGCGCGTTTGGTGCTACGGTTTTGGCATATTAGTACACA
GGGTGCTGTGCGTTCAAGACCAGTATCATTTGCATTCCTTCCACTGACAG
GACCTGATGGATCAGCGTTACGGGATGGAATGCACGAACTCTTATGTTGG
GAAATTGAAAGGAAGTCGAGTTGGAGGAAGTGTGGAATTGAGAAGTGCTG
TATTCTTTCGTGCAAATCAACCAGTCCCAGAGGAATTACTCATCTTGCGT
TTTCCTGCAGCAAGTGCAGCACGCTTTGATGGTGCGCGTTTGGTGCTACG
GTTTTGGCATATTAGTACACAGGGTGCTGTGCGTTCAAGACCAGTATCAT
TTGCATTCCTTCCACTGACAGGACCTGATGGATCAGCGTTACGGGATGGA
ATGCACGAACTCTTATGTTGGGAA
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